AlfalfaGEDB | MsaG015371

M. sativa ssp. caerulea / MsaG015371

KEGG: -
GO: -
PFAM: PF13621.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015371	XP_003601228.2	93.542	480	31	0	15	494	16	495	0.0	939

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015371	sp\|Q08BY5\|JMJD4_DANRE	40.000	335	172	6	20	351	34	342	1.82e-77	251

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015371	tr\|G7J4W1\|G7J4W1_MEDTR	93.542	480	31	0	15	494	16	495	0.0	939

TFs/TRs:

Gene ID	Type	Classification
MsaG015371	TR	Jumonji

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000717	MsaG015371	0.863963	3.403932e-64	3.085653e-61
MsaG001026	MsaG015371	0.812873	5.861627e-51	1.074215e-48
MsaG001134	MsaG015371	0.813679	3.906169e-51	7.304428e-49
MsaG001468	MsaG015371	0.840471	1.576500e-57	6.246111e-55
MsaG001542	MsaG015371	0.842356	5.057501e-58	2.127282e-55
MsaG001551	MsaG015371	0.835118	3.682776e-56	1.237948e-53
MsaG001939	MsaG015371	0.848667	1.003630e-59	5.198025e-57
MsaG002379	MsaG015371	0.844456	1.399152e-58	6.297238e-56
MsaG002489	MsaG015371	0.831189	3.465507e-55	1.037685e-52
MsaG002775	MsaG015371	0.807960	6.660446e-50	1.082857e-47
MsaG003861	MsaG015371	0.842994	3.429691e-58	1.472436e-55
MsaG004006	MsaG015371	0.820169	1.385115e-52	3.060162e-50
MsaG003932	MsaG015371	0.823558	2.294960e-53	5.550732e-51
MsaG003936	MsaG015371	0.818993	2.561511e-52	5.486292e-50
MsaG004107	MsaG015371	0.866624	4.999227e-65	5.042423e-62
MsaG004184	MsaG015371	0.841848	6.880657e-58	2.847566e-55
MsaG004452	MsaG015371	0.835810	2.465853e-56	8.462410e-54
MsaG005410	MsaG015371	0.823905	1.904354e-53	4.649554e-51
MsaG005496	MsaG015371	0.832886	1.325576e-55	4.170484e-53
MsaG005526	MsaG015371	0.851919	1.240928e-60	7.188660e-58
MsaG005603	MsaG015371	0.831663	2.651870e-55	8.052114e-53
MsaG005792	MsaG015371	0.840394	1.651677e-57	6.528166e-55
MsaG005869	MsaG015371	0.866708	4.700730e-65	4.757567e-62
MsaG006500	MsaG015371	0.821610	6.477484e-53	1.486678e-50
MsaG006620	MsaG015371	0.816577	8.936976e-52	1.798250e-49
MsaG006670	MsaG015371	0.822437	4.176546e-53	9.799916e-51
MsaG006809	MsaG015371	0.837763	7.877428e-57	2.868121e-54
MsaG006842	MsaG015371	0.815206	1.802023e-51	3.501663e-49
MsaG007139	MsaG015371	0.818374	3.535357e-52	7.450539e-50
MsaG007616	MsaG015371	0.828662	1.420929e-54	3.958548e-52
MsaG007817	MsaG015371	0.835249	3.413769e-56	1.151994e-53
MsaG008029	MsaG015371	0.814543	2.523862e-51	4.822783e-49
MsaG008056	MsaG015371	0.800668	2.164422e-48	2.970994e-46
MsaG008222	MsaG015371	0.817019	7.123541e-52	1.449773e-49
MsaG008234	MsaG015371	0.854751	1.929539e-61	1.235491e-58
MsaG008561	MsaG015371	0.828844	1.285008e-54	3.598056e-52
MsaG008619	MsaG015371	0.887960	1.964786e-72	5.215512e-69
MsaG009656	MsaG015371	0.801580	1.411537e-48	1.977821e-46
MsaG010829	MsaG015371	0.823003	3.088452e-53	7.358549e-51
MsaG011175	MsaG015371	0.804757	3.129003e-49	4.717128e-47
MsaG011474	MsaG015371	0.803180	6.634492e-49	9.642946e-47
MsaG011584	MsaG015371	0.805921	1.789417e-49	2.771765e-47
MsaG011624	MsaG015371	0.817232	6.382565e-52	1.306134e-49
MsaG011831	MsaG015371	0.866316	6.256159e-65	6.230260e-62
MsaG012015	MsaG015371	0.837948	7.061021e-57	2.585624e-54
MsaG012522	MsaG015371	0.853117	5.674662e-61	3.428389e-58
MsaG012549	MsaG015371	0.830199	6.041860e-55	1.758530e-52
MsaG012723	MsaG015371	0.860269	4.568336e-63	3.589173e-60
MsaG013271	MsaG015371	0.858456	1.589941e-62	1.166214e-59
MsaG014855	MsaG015371	0.801408	1.530618e-48	2.136357e-46
MsaG015236	MsaG015371	0.852016	1.165436e-60	6.774496e-58
MsaG015371	MsaG015871	0.813125	5.164304e-51	9.523820e-49
MsaG015371	MsaG016209	0.875325	6.979759e-68	1.018159e-64
MsaG015371	MsaG016215	0.875316	7.034239e-68	1.025674e-64
MsaG015371	MsaG016327	0.858985	1.106849e-62	8.280724e-60
MsaG015371	MsaG016471	0.841424	8.891109e-58	3.630214e-55
MsaG015371	MsaG017009	0.876466	2.843237e-68	4.364829e-65
MsaG015371	MsaG017068	0.807897	6.870298e-50	1.115298e-47
MsaG015371	MsaG017081	0.831100	3.643437e-55	1.088189e-52
MsaG015371	MsaG017189	0.858210	1.880666e-62	1.366768e-59
MsaG015371	MsaG017324	0.819608	1.858539e-52	4.045139e-50
MsaG015371	MsaG017644	0.890138	2.840371e-73	8.431530e-70
MsaG015371	MsaG017699	0.828386	1.656317e-54	4.578906e-52
MsaG015371	MsaG017954	0.851643	1.484597e-60	8.516067e-58
MsaG015371	MsaG017983	0.838304	5.725725e-57	2.119786e-54
MsaG015371	MsaG018085	0.826627	4.355050e-54	1.146034e-51
MsaG015371	MsaG018169	0.838963	3.876421e-57	1.464960e-54
MsaG015371	MsaG018223	0.842992	3.433275e-58	1.473909e-55
MsaG015371	MsaG018754	0.827623	2.522514e-54	6.825651e-52
MsaG015371	MsaG018959	0.811039	1.463966e-50	2.564263e-48
MsaG015371	MsaG019120	0.852242	1.005723e-60	5.892117e-58
MsaG015371	MsaG019223	0.824112	1.703656e-53	4.183060e-51
MsaG015371	MsaG019491	0.829660	8.161473e-55	2.339138e-52
MsaG015371	MsaG019526	0.813012	5.464494e-51	1.004939e-48
MsaG015371	MsaG019527	0.826517	4.624989e-54	1.213396e-51
MsaG015371	MsaG019638	0.849649	5.367986e-60	2.874950e-57
MsaG015371	MsaG019649	0.856368	6.546970e-62	4.445607e-59
MsaG015371	MsaG019907	0.823013	3.071162e-53	7.319365e-51
MsaG015371	MsaG019936	0.812658	6.529105e-51	1.190120e-48
MsaG015371	MsaG020021	0.867865	2.014561e-65	2.137092e-62
MsaG015371	MsaG020321	0.801740	1.309456e-48	1.841506e-46
MsaG015371	MsaG020382	0.824172	1.650033e-53	4.057806e-51
MsaG015371	MsaG020550	0.842230	5.456854e-58	2.285819e-55
MsaG015371	MsaG020733	0.889777	3.924942e-73	1.143522e-69
MsaG015371	MsaG020812	0.802555	8.916520e-49	1.277526e-46
MsaG015371	MsaG021515	0.855135	1.494049e-61	9.698971e-59
MsaG015371	MsaG022766	0.819299	2.183694e-52	4.714958e-50
MsaG015371	MsaG022811	0.829984	6.812421e-55	1.970664e-52
MsaG015371	MsaG023188	0.854119	2.933916e-61	1.836726e-58
MsaG015371	MsaG023649	0.810270	2.142936e-50	3.683674e-48
MsaG015371	MsaG023729	0.865990	7.926542e-65	7.790924e-62
MsaG015371	MsaG023756	0.804167	4.148180e-49	6.168662e-47
MsaG015371	MsaG023861	0.878805	4.380067e-69	7.482383e-66
MsaG015371	MsaG024295	0.820242	1.333329e-52	2.951468e-50
MsaG015371	MsaG025143	0.856456	6.170084e-62	4.203121e-59
MsaG015371	MsaG026587	0.830360	5.519107e-55	1.613786e-52
MsaG015371	MsaG026686	0.878345	6.349440e-69	1.061685e-65
MsaG015371	MsaG026692	0.818268	3.734905e-52	7.849588e-50
MsaG015371	MsaG027170	0.827413	2.830942e-54	7.615011e-52
MsaG015371	MsaG027198	0.863960	3.410387e-64	3.091116e-61
MsaG015371	MsaG027207	0.835160	3.595622e-56	1.210147e-53
MsaG015371	MsaG027210	0.841499	8.497716e-58	3.477791e-55
MsaG015371	MsaG027376	0.815276	1.738392e-51	3.384085e-49
MsaG015371	MsaG027483	0.829096	1.117483e-54	3.151371e-52
MsaG015371	MsaG027738	0.822135	4.904548e-53	1.141525e-50
MsaG015371	MsaG027828	0.830585	4.865171e-55	1.431692e-52
MsaG015371	MsaG027807	0.802395	9.618569e-49	1.373069e-46
MsaG015371	MsaG027963	0.873021	4.171617e-67	5.500707e-64
MsaG015371	MsaG027984	0.844577	1.298216e-58	5.866369e-56
MsaG015371	MsaG027987	0.826433	4.843889e-54	1.267872e-51
MsaG015371	MsaG028028	0.846401	4.183105e-59	2.007773e-56
MsaG015371	MsaG028191	0.816022	1.188000e-51	2.356746e-49
MsaG015371	MsaG028211	0.858457	1.589046e-62	1.165608e-59
MsaG015371	MsaG028335	0.856370	6.540200e-62	4.441294e-59
MsaG015371	MsaG028420	0.801695	1.337280e-48	1.878705e-46
MsaG015371	MsaG028531	0.882000	3.196986e-70	6.336626e-67
MsaG015371	MsaG029048	0.804126	4.231120e-49	6.285984e-47
MsaG015371	MsaG029141	0.803341	6.146709e-49	8.967078e-47
MsaG015371	MsaG029212	0.816517	9.217683e-52	1.851826e-49
MsaG015371	MsaG029546	0.854518	2.252564e-61	1.430463e-58
MsaG015371	MsaG029579	0.811491	1.169580e-50	2.071405e-48
MsaG015371	MsaG029953	0.850934	2.349834e-60	1.315290e-57
MsaG015371	MsaG030649	0.817209	6.456686e-52	1.320536e-49
MsaG015371	MsaG031091	0.815084	1.916708e-51	3.713006e-49
MsaG015371	MsaG031129	0.833710	8.280527e-56	2.669126e-53
MsaG015371	MsaG032848	0.840087	1.984637e-57	7.768775e-55
MsaG015371	MsaG032901	0.838540	4.979893e-57	1.857328e-54
MsaG015371	MsaG033051	0.831039	3.771346e-55	1.124395e-52
MsaG015371	MsaG034047	0.810815	1.636275e-50	2.850373e-48
MsaG015371	MsaG034319	0.807613	7.888753e-50	1.271874e-47
MsaG015371	MsaG034514	0.817013	7.142438e-52	1.453428e-49
MsaG015371	MsaG034836	0.829320	9.861866e-55	2.798954e-52
MsaG015371	MsaG035233	0.812197	8.221616e-51	1.481575e-48
MsaG015371	MsaG036065	0.853617	4.083994e-61	2.511232e-58
MsaG015371	MsaG036423	0.829626	8.319926e-55	2.382258e-52
MsaG015371	MsaG039734	0.817599	5.279834e-52	1.090689e-49
MsaG015371	MsaG039902	0.804997	2.789056e-49	4.228157e-47
MsaG015371	MsaG040270	0.802707	8.300477e-49	1.193338e-46
MsaG015371	MsaG040504	0.887753	2.354234e-72	6.182930e-69
MsaG015371	MsaG040577	0.818077	4.122743e-52	8.622263e-50
MsaG015371	MsaG040600	0.812703	6.380870e-51	1.164466e-48
MsaG015371	MsaG041334	0.803929	4.647725e-49	6.873337e-47
MsaG015371	MsaG041754	0.848312	1.257478e-59	6.434612e-57
MsaG015371	MsaG041800	0.869544	5.805267e-66	6.599840e-63
MsaG015371	MsaG043669	0.848365	1.215825e-59	6.232011e-57
MsaG015371	MsaG043725	0.851124	2.078350e-60	1.170933e-57
MsaG015371	MsaG043817	0.806629	1.271271e-49	2.002500e-47
MsaG015371	MsaG044104	0.811056	1.451746e-50	2.543914e-48
MsaG015371	MsaG044200	0.890703	1.708420e-73	5.223813e-70
MsaG015371	MsaG044661	0.802316	9.982003e-49	1.422375e-46
MsaG015371	MsaG044688	0.800343	2.519296e-48	3.432713e-46
MsaG015371	MsaG045117	0.833896	7.441274e-56	2.411620e-53
MsaG015371	MsaG045580	0.806842	1.146769e-49	1.815347e-47
MsaG015371	MsaG045581	0.804013	4.465388e-49	6.616661e-47
MsaG015371	MsaG045819	0.839405	2.980918e-57	1.142113e-54
MsaG015371	MsaG045832	0.866162	6.993066e-65	6.921656e-62
MsaG015371	MsaG046041	0.825927	6.381213e-54	1.646952e-51
MsaG015371	MsaG046173	0.825954	6.287251e-54	1.623912e-51
MsaG015371	MsaG046306	0.832066	2.112013e-55	6.488476e-53
MsaG015371	MsaG046364	0.804718	3.188861e-49	4.802858e-47
MsaG015371	MsaG046522	0.885678	1.426657e-71	3.377296e-68
MsaG015371	MsaG046501	0.863788	3.855389e-64	3.470987e-61
MsaG015371	MsaG046603	0.837587	8.734274e-57	3.163051e-54
MsaG015371	MsaG046902	0.851329	1.820855e-60	1.033140e-57
MsaG015371	MsaG046939	0.851738	1.396148e-60	8.035502e-58
MsaG015371	MsaG046975	0.820032	1.488333e-52	3.276234e-50
MsaG015371	MsaG047097	0.842296	5.244640e-58	2.201634e-55
MsaG015371	MsaG002654	0.839000	3.792142e-57	1.434798e-54
MsaG015371	MsaG000634	0.807466	8.474055e-50	1.361443e-47
MsaG015371	MsaG001987	0.831518	2.877951e-55	8.701060e-53
MsaG015371	MsaG005167	0.829110	1.108482e-54	3.127294e-52
MsaG015371	MsaG011183	0.836932	1.282308e-56	4.551865e-54
MsaG015371	MsaG006148	0.816007	1.197419e-51	2.374465e-49
MsaG015371	MsaG013496	0.827653	2.481141e-54	6.719252e-52
MsaG015371	MsaG019458	0.814767	2.252115e-51	4.328073e-49
MsaG015371	MsaG018912	0.801759	1.297522e-48	1.825529e-46
MsaG015371	MsaG022828	0.854006	3.160960e-61	1.971023e-58
MsaG015371	MsaG019847	0.860033	5.378336e-63	4.186820e-60
MsaG015371	MsaG017938	0.800116	2.801076e-48	3.797055e-46
MsaG015371	MsaG029155	0.800795	2.040131e-48	2.808363e-46
MsaG015371	MsaG029390	0.847918	1.612875e-59	8.145867e-57
MsaG015371	MsaG028079	0.831438	3.011041e-55	9.082116e-53
MsaG015371	MsaG033602	0.895989	1.280201e-75	5.205916e-72
MsaG015371	MsaG031012	0.808183	5.973330e-50	9.763703e-48
MsaG015371	MsaG031635	0.809635	2.931199e-50	4.961736e-48
MsaG015371	MsaG034655	0.857142	3.883945e-62	2.712734e-59
MsaG015371	MsaG033082	0.831785	2.475411e-55	7.543258e-53
MsaG015371	MsaG032525	0.843854	2.025905e-58	8.940256e-56
MsaG015371	MsaG031847	0.821758	5.990920e-53	1.380378e-50
MsaG015371	MsaG038885	0.803667	5.264624e-49	7.738537e-47
MsaG015371	MsaG036286	0.842045	6.107047e-58	2.543366e-55
MsaG015371	MsaG037374	0.838654	4.654075e-57	1.741977e-54
MsaG015371	MsaG036672	0.810647	1.778375e-50	3.085260e-48
MsaG015371	MsaG035600	0.823387	2.515167e-53	6.055319e-51
MsaG015371	MsaG036233	0.832240	1.913108e-55	5.906756e-53
MsaG015371	MsaG037531	0.833770	8.000932e-56	2.583519e-53
MsaG015371	MsaG036685	0.803740	5.084009e-49	7.485898e-47
MsaG015371	MsaG037058	0.800772	2.062193e-48	2.837271e-46
MsaG015371	MsaG036758	0.840904	1.215708e-57	4.882526e-55
MsaG015371	MsaG037508	0.842847	3.749630e-58	1.602202e-55
MsaG015371	MsaG043366	0.822344	4.387829e-53	1.027031e-50
MsaG015371	MsaG041442	0.867446	2.741014e-65	2.857945e-62
MsaG015371	MsaG044977	0.824050	1.761638e-53	4.318192e-51
MsaG015371	MsaG044531	0.822202	4.731527e-53	1.103222e-50
MsaG015371	MsaG046885	0.818435	3.424578e-52	7.228513e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015371	MtrunA17_Chr3g0117261	93.542	480	31	0	15	494	16	495	0.0	939
MsaG015371	MtrunA17_Chr7g0268031	28.165	316	148	14	7	303	197	452	1.17e-19	92.0
MsaG015371	MtrunA17_Chr3g0132281	25.000	296	165	13	12	299	132	378	3.93e-15	78.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015371	AT5G63080.1	56.356	472	180	6	8	476	3	451	0.0	533
MsaG015371	AT5G06550.1	25.000	324	157	13	14	319	194	449	3.24e-14	75.5
MsaG015371	AT1G78280.1	23.411	299	166	10	12	299	125	371	5.34e-13	72.0

Find 89 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTAACTTATGCAGACTATT+TGG	0.218231	3:+86075419	MsaT015371.1:intron
GTATCATCAAGTTCATAATT+TGG	0.246758	3:+86075492	MsaT015371.1:CDS
CACTTGTTCTGGCAGGATCT+TGG	0.254470	3:+86074807	MsaT015371.1:intron
GTGCTGCTTTGCTATATATA+TGG	0.271036	3:+86076352	MsaT015371.1:CDS
CTCAAAATCAGAGGACAAAT+TGG	0.271585	3:-86076593	None:intergenic
TCAATGCCTATAACCTTTCT+TGG	0.293305	3:+86075719	MsaT015371.1:CDS
ACTGATTGGGTTACACCTAA+TGG	0.293546	3:+86073417	MsaT015371.1:CDS
AGTGGTGTTAACTGGATTAA+TGG	0.294120	3:+86073374	MsaT015371.1:CDS
GTTATGTATGCTACATATTC+TGG	0.294875	3:-86074540	None:intergenic
CATCAACAACATCAAAATAA+AGG	0.300767	3:+86073275	MsaT015371.1:CDS
TTTGTTTATATGGGAGTTAA+AGG	0.310574	3:+86074675	MsaT015371.1:CDS
AACAAACCAGTGGTGTTAAC+TGG	0.321042	3:+86073366	MsaT015371.1:CDS
TGAATTTGTTGATAGATATA+TGG	0.323277	3:+86073338	MsaT015371.1:CDS
CTTTAAATATTGCGTCTATT+AGG	0.325382	3:+86076425	MsaT015371.1:CDS
ATAAATTTGATGAGGTCTTC+AGG	0.341372	3:-86076685	None:intergenic
GATGTCTTCAATGTATTCCT+TGG	0.357631	3:-86075879	None:intergenic
GTTCAGTGCAGTAATGAAAA+TGG	0.363737	3:+86073875	MsaT015371.1:CDS
CTGGATTAATGGATCATCAT+TGG	0.366707	3:+86073385	MsaT015371.1:CDS
GAGTGCTTCATTGGTTGATT+TGG	0.369774	3:+86076615	MsaT015371.1:CDS
TACCACCCAAGAAAGGTTAT+AGG	0.377980	3:-86075725	None:intergenic
ATTGGAGAGCTTCCACTGAT+TGG	0.381303	3:+86073403	MsaT015371.1:CDS
CAATGCCTATAACCTTTCTT+GGG	0.382210	3:+86075720	MsaT015371.1:CDS
TGACAGTGACCAGCAAAATA+AGG	0.385417	3:+86074629	MsaT015371.1:CDS
AGACAATACCGTCGCAGAGC+TGG	0.401710	3:+86076708	MsaT015371.1:CDS
AAACACGTGCGTGCTCTAGA+AGG	0.404523	3:+86076466	MsaT015371.1:CDS
TTGGAGAGCTTCCACTGATT+GGG	0.421960	3:+86073404	MsaT015371.1:CDS
ATCAACAACATCAAAATAAA+GGG	0.427273	3:+86073276	MsaT015371.1:CDS
CTGCAGAACCCTCAACTTCA+AGG	0.428740	3:-86073853	None:intergenic
TTTCATTTCATACTTTGCCT+TGG	0.431384	3:+86076321	MsaT015371.1:CDS
CTGTACCGTATTTGAAGGAT+TGG	0.436080	3:+86073921	MsaT015371.1:CDS
GAGAAATTGAGAAGGTGAAC+GGG	0.436671	3:+86073298	MsaT015371.1:CDS
CAATATCTATAAACCACAAT+TGG	0.441545	3:+86075695	MsaT015371.1:CDS
CAGCAAGGTTGCGCTGGCAG+AGG	0.448536	3:-86075928	None:intergenic
TTGGTTGATTTGGTGGGACT+CGG	0.453555	3:+86076625	MsaT015371.1:CDS
CATGCCTGTCAAACACGAAA+TGG	0.455876	3:-86074922	None:intergenic
CTCAATTTACCACCCAAGAA+AGG	0.458313	3:-86075732	None:intergenic
ATACTTTGCCTTGGCCAACT+TGG	0.465254	3:+86076330	MsaT015371.1:CDS
TGTGTCTGTACCGTATTTGA+AGG	0.465358	3:+86073916	MsaT015371.1:CDS
AGTGCCATTTCGTGTTTGAC+AGG	0.469316	3:+86074918	MsaT015371.1:CDS
TGCTTCATTGGTTGATTTGG+TGG	0.472657	3:+86076618	MsaT015371.1:CDS
TGAACGTTGCCTTGAAGTTG+AGG	0.484615	3:+86073844	MsaT015371.1:CDS
GACAATACCGTCGCAGAGCT+GGG	0.485971	3:+86076709	MsaT015371.1:CDS
TTCTAAATTCTGCATGCAGG+TGG	0.497798	3:+86076540	MsaT015371.1:CDS
GCTTCATTGGTTGATTTGGT+GGG	0.500949	3:+86076619	MsaT015371.1:CDS
AATGAAAATGGTTCAAGTAA+TGG	0.504999	3:+86073887	MsaT015371.1:CDS
CGCAACCTTGCTGCCAACAC+AGG	0.505053	3:+86075938	MsaT015371.1:CDS
AAATGCCAATCCTTCAAATA+CGG	0.505177	3:-86073926	None:intergenic
TGTTGGCAGCAAGGTTGCGC+TGG	0.509302	3:-86075934	None:intergenic
TGTCAAACACGAAATGGCAC+TGG	0.510078	3:-86074916	None:intergenic
GAACGTTGCCTTGAAGTTGA+GGG	0.513815	3:+86073845	MsaT015371.1:CDS
TTAGAATGCACACAAGAAGC+AGG	0.515116	3:+86075442	MsaT015371.1:CDS
ATACAGATGACTCCATGTTA+AGG	0.518181	3:-86076735	None:intergenic
TATAGGCATTGAACCAATTG+TGG	0.520435	3:-86075708	None:intergenic
TCATATTTGTTCCCAGTGGA+TGG	0.526700	3:+86075470	MsaT015371.1:CDS
ATTAATCCAGTTAACACCAC+TGG	0.527498	3:-86073372	None:intergenic
AACTTGATGATACCATCCAC+TGG	0.531578	3:-86075482	None:intergenic
GGAATACATTGAAGACATCA+AGG	0.541622	3:+86075883	MsaT015371.1:CDS
AAATATTGCGTCTATTAGGA+AGG	0.550115	3:+86076429	MsaT015371.1:CDS
AAGCAGCACCAAGTTGGCCA+AGG	0.555336	3:-86076338	None:intergenic
TACTCTTGACAAACTTTCAG+TGG	0.558191	3:-86076389	None:intergenic
GTCAAACACGAAATGGCACT+GGG	0.569616	3:-86074915	None:intergenic
TGCCTATAACCTTTCTTGGG+TGG	0.577403	3:+86075723	MsaT015371.1:CDS
ATGTCTGTGGAAAGAAGAGA+TGG	0.577930	3:+86074876	MsaT015371.1:CDS
GGAGAAATTGAGAAGGTGAA+CGG	0.580825	3:+86073297	MsaT015371.1:CDS
TCTAAATTCTGCATGCAGGT+GGG	0.581693	3:+86076541	MsaT015371.1:CDS
AACACGTGCGTGCTCTAGAA+GGG	0.582042	3:+86076467	MsaT015371.1:CDS
CTGCACCTGTGTTGGCAGCA+AGG	0.594405	3:-86075943	None:intergenic
AACACGAAATGGCACTGGGA+AGG	0.599724	3:-86074911	None:intergenic
GAGCGACTACAATGAGGCCA+AGG	0.603057	3:+86075862	MsaT015371.1:CDS
TAGAATGCACACAAGAAGCA+GGG	0.604713	3:+86075443	MsaT015371.1:CDS
AATTGAGAAGGTGAACGGGA+AGG	0.605761	3:+86073302	MsaT015371.1:CDS
AAGGTCGCCCAGCTCTGCGA+CGG	0.606124	3:-86076716	None:intergenic
ACACAGTACTGCACCTGTGT+TGG	0.611154	3:-86075951	None:intergenic
AGAGCTGGGCGACCTTAACA+TGG	0.618534	3:+86076723	MsaT015371.1:CDS
ATAGCAAAGCAGCACCAAGT+TGG	0.619753	3:-86076344	None:intergenic
ATTAGGTGTAACCCAATCAG+TGG	0.622628	3:-86073415	None:intergenic
AGCTGGTCAGCAAATGTCTG+TGG	0.623034	3:+86074863	MsaT015371.1:CDS
TATTGTCTATAAATTTGATG+AGG	0.630189	3:-86076693	None:intergenic
ATGCAGAATTTAGAAAACCT+AGG	0.631755	3:-86076532	None:intergenic
CTGAAAACATCAGCATGTAG+AGG	0.641625	3:-86074833	None:intergenic
TGAAGCACTCTCAAAATCAG+AGG	0.642152	3:-86076602	None:intergenic
GTATCTGACTCAAAATACCC+TGG	0.643979	3:+86075311	MsaT015371.1:CDS
AATAAAGGGAGAAATTGAGA+AGG	0.646492	3:+86073290	MsaT015371.1:CDS
ACTTGATGATACCATCCACT+GGG	0.651707	3:-86075481	None:intergenic
AGAATGCACACAAGAAGCAG+GGG	0.665619	3:+86075444	MsaT015371.1:CDS
GAAATCATATTTGTTCCCAG+TGG	0.671903	3:+86075466	MsaT015371.1:CDS
CAATCATCACAAAAGTACGT+TGG	0.708793	3:-86074564	None:intergenic
TATGGACAAGAACAAACCAG+TGG	0.727874	3:+86073356	MsaT015371.1:CDS
AGGGACTCATGATTGCATCG+TGG	0.769193	3:+86076486	MsaT015371.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86073264	86076771	86073264	ID=MsaG015371
Chr3	mRNA	86073264	86076771	86073264	ID=MsaT015371.1;Parent=MsaG015371
Chr3	exon	86073264	86073491	86073264	ID=MsaT015371.1.exon1;Parent=MsaT015371.1
Chr3	CDS	86073264	86073491	86073264	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86073776	86073955	86073776	ID=MsaT015371.1.exon2;Parent=MsaT015371.1
Chr3	CDS	86073776	86073955	86073776	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86074534	86074696	86074534	ID=MsaT015371.1.exon3;Parent=MsaT015371.1
Chr3	CDS	86074534	86074696	86074534	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86074822	86074939	86074822	ID=MsaT015371.1.exon4;Parent=MsaT015371.1
Chr3	CDS	86074822	86074939	86074822	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86075274	86075343	86075274	ID=MsaT015371.1.exon5;Parent=MsaT015371.1
Chr3	CDS	86075274	86075343	86075274	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86075433	86075513	86075433	ID=MsaT015371.1.exon6;Parent=MsaT015371.1
Chr3	CDS	86075433	86075513	86075433	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86075688	86075744	86075688	ID=MsaT015371.1.exon7;Parent=MsaT015371.1
Chr3	CDS	86075688	86075744	86075688	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86075848	86075959	86075848	ID=MsaT015371.1.exon8;Parent=MsaT015371.1
Chr3	CDS	86075848	86075959	86075848	ID=cds.MsaT015371.1;Parent=MsaT015371.1
Chr3	exon	86076296	86076771	86076296	ID=MsaT015371.1.exon9;Parent=MsaT015371.1
Chr3	CDS	86076296	86076771	86076296	ID=cds.MsaT015371.1;Parent=MsaT015371.1

Gene Sequence

>MsaT015371.1

ATGGGTATCATCATCAACAACATCAAAATAAAGGGAGAAATTGAGAAGGTGAACGGGAAGGAATTGAGTTACAGTGAATTTGTTGATAGATATATGGACAAGAACAAACCAGTGGTGTTAACTGGATTAATGGATCATCATTGGAGAGCTTCCACTGATTGGGTTACACCTAATGGAAAACCTAATCTTCAATTTTTCTTCAATCATTTTGGTGCTTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTCACTGATCAAAAAAGAGAGGAGATGTTGGTCTCTGATTTCGTTGAACGTTGCCTTGAAGTTGAGGGTTCTGCAGTTCAGTGCAGTAATGAAAATGGTTCAAGTAATGGTGACTCTGTGTCTGTACCGTATTTGAAGGATTGGCATTTTGTCAAGGAGTATCCAGAATATGTAGCATACATAACTCCAACGTACTTTTGTGATGATTGGCTTAACTTGTATCTTGACAACTTCAGAATGAATACTAGTTCTGACAGTGACCAGCAAAATAAGGAAATCTGCTGCTCTGACTATCGTTTTGTTTATATGGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTACAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATTTCGTGTTTGACAGGAATGCGAAAAGCTCTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATACCCTGGTTTTGAAAAGACTATTTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTGAGCGACTACAATGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGTGATGATTTTGAAGGCCTCTGCCAGCGCAACCTTGCTGCCAACACAGGGATGAATTTTTTTGACTTCTTTACTTTCATTTCATACTTTGCCTTGGCCAACTTGGTGCTGCTTTGCTATATATATGGAAGAGATAGAAGCACCACTGAAAGTTTGTCAAGAGTAGCTCAGCATTTATCTTTAAATATTGCGTCTATTAGGAAGGTTGCATCAGATATGAAACACGTGCGTGCTCTAGAAGGGACTCATGATTGCATCGTGGATATGAGAAAAACATTTGAAGATCCTAGGTTTTCTAAATTCTGCATGCAGGTGGGAAAAGCATATTTAATGATACATGAGCAATCCAATTTGTCCTCTGATTTTGAGAGTGCTTCATTGGTTGATTTGGTGGGACTCGGTGTTTTGAAAGCGTGCACTTCTTCTCAGATTTACACACCTGAAGACCTCATCAAATTTATAGACAATACCGTCGCAGAGCTGGGCGACCTTAACATGGAGTCATCTGTATTGCACGTTGCTTGA

Protein sequence

>MsaT015371.1

MGIIINNIKIKGEIEKVNGKELSYSEFVDRYMDKNKPVVLTGLMDHHWRASTDWVTPNGKPNLQFFFNHFGASKVQVADCDTRDFTDQKREEMLVSDFVERCLEVEGSAVQCSNENGSSNGDSVSVPYLKDWHFVKEYPEYVAYITPTYFCDDWLNLYLDNFRMNTSSDSDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHFVFDRNAKSSVYNIFDEVSDSKYPGFEKTIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLSDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFFDFFTFISYFALANLVLLCYIYGRDRSTTESLSRVAQHLSLNIASIRKVASDMKHVRALEGTHDCIVDMRKTFEDPRFSKFCMQVGKAYLMIHEQSNLSSDFESASLVDLVGLGVLKACTSSQIYTPEDLIKFIDNTVAELGDLNMESSVLHVA*