AlfalfaGEDB | MsaG015385

M. sativa ssp. caerulea / MsaG015385

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015385	RHN68772.1	99.315	292	2	0	1	292	158	449	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015385	sp\|Q9S7L2\|MYB98_ARATH	56.911	246	87	4	5	238	188	426	7.36e-86	266

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015385	tr\|A0A396IT83\|A0A396IT83_MEDTR	99.315	292	2	0	1	292	158	449	0.0	610

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015385	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003907	MsaG015385	0.845235	8.646766e-59	3.992653e-56
MsaG005477	MsaG015385	0.846523	3.877057e-59	1.868417e-56
MsaG006084	MsaG015385	0.856966	4.374969e-62	3.035840e-59
MsaG006828	MsaG015385	0.801115	1.756251e-48	2.435027e-46
MsaG007864	MsaG015385	0.876867	2.069268e-68	3.234483e-65
MsaG011441	MsaG015385	0.822364	4.341594e-53	1.016764e-50
MsaG011507	MsaG015385	0.800191	2.704415e-48	3.672247e-46
MsaG012643	MsaG015385	0.821787	5.897995e-53	1.360011e-50
MsaG015385	MsaG017883	0.805649	2.039866e-49	3.139625e-47
MsaG015385	MsaG017976	0.804950	2.852911e-49	4.320214e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015385	MtrunA17_Chr3g0117511	99.315	292	2	0	1	292	158	449	0.0	610
MsaG015385	MtrunA17_Chr4g0058991	59.420	276	99	5	1	271	184	451	3.49e-107	319
MsaG015385	MtrunA17_Chr5g0421201	58.621	203	48	7	78	275	12	183	1.54e-69	213
MsaG015385	MtrunA17_Chr7g0228531	70.079	127	37	1	20	146	214	339	6.11e-57	189
MsaG015385	MtrunA17_Chr5g0429661	61.379	145	48	2	11	148	108	251	1.81e-56	185
MsaG015385	MtrunA17_Chr7g0228481	65.354	127	43	1	20	146	214	339	5.71e-51	173
MsaG015385	MtrunA17_Chr7g0228401	46.196	184	74	2	19	177	248	431	8.81e-45	158
MsaG015385	MtrunA17_Chr7g0233061	56.522	138	56	3	16	151	170	305	1.35e-42	149
MsaG015385	MtrunA17_Chr1g0177901	55.396	139	52	3	36	173	4	133	8.42e-42	143
MsaG015385	MtrunA17_Chr7g0238631	59.649	114	46	0	24	137	111	224	2.24e-41	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015385	AT4G18770.1	56.911	246	87	4	5	238	188	426	7.48e-87	266
MsaG015385	AT3G27785.1	64.000	150	50	2	10	155	173	322	2.61e-60	198
MsaG015385	AT5G58850.1	60.377	159	49	3	23	168	102	259	4.92e-55	184
MsaG015385	AT5G11050.1	45.064	233	115	5	23	249	102	327	4.68e-53	179
MsaG015385	AT5G40360.1	58.696	138	55	1	19	154	151	288	1.68e-50	170
MsaG015385	AT3G09370.2	59.167	120	47	1	23	140	132	251	6.28e-42	151
MsaG015385	AT3G09370.1	59.167	120	47	1	23	140	127	246	7.26e-42	151
MsaG015385	AT3G09370.3	59.167	120	47	1	23	140	140	259	8.71e-42	151
MsaG015385	AT5G02320.1	61.165	103	40	0	24	126	125	227	5.37e-40	146
MsaG015385	AT5G02320.2	61.165	103	40	0	24	126	125	227	5.37e-40	146

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Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGTTGTTGGTTCAGC+TGG	0.412723	3:+86250478	MsaT015385.1:intron
AACTTTCTCAGGCTTTCTAG+AGG	0.574016	3:-86250252	None:intergenic
AAGAAGATCAACTTTATAAA+AGG	0.205425	3:+86250278	MsaT015385.1:CDS
AAGACAATACTCCAAAAGAA+AGG	0.464183	3:+86251218	MsaT015385.1:CDS
AATGGACAGTAGAAGAAGAT+CGG	0.617069	3:+86250303	MsaT015385.1:CDS
AATGGGCGGAGATAGCTAAA+AGG	0.422785	3:+86251142	MsaT015385.1:CDS
ACATCATCAAAATCACAAGT+TGG	0.586726	3:-86251435	None:intergenic
AGAAATGCCACTAGATATTA+TGG	0.284041	3:+86251584	MsaT015385.1:CDS
AGAAGATCAACTTTATAAAA+GGG	0.467069	3:+86250279	MsaT015385.1:CDS
AGACAATACTCCAAAAGAAA+GGG	0.551275	3:+86251219	MsaT015385.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86250221	86251725	86250221	ID=MsaG015385
Chr3	mRNA	86250221	86251725	86250221	ID=MsaT015385.1;Parent=MsaG015385
Chr3	exon	86250221	86250324	86250221	ID=MsaT015385.1.exon1;Parent=MsaT015385.1
Chr3	CDS	86250221	86250324	86250221	ID=cds.MsaT015385.1;Parent=MsaT015385.1
Chr3	exon	86250484	86250610	86250484	ID=MsaT015385.1.exon2;Parent=MsaT015385.1
Chr3	CDS	86250484	86250610	86250484	ID=cds.MsaT015385.1;Parent=MsaT015385.1
Chr3	exon	86251078	86251725	86251078	ID=MsaT015385.1.exon3;Parent=MsaT015385.1
Chr3	CDS	86251078	86251725	86251078	ID=cds.MsaT015385.1;Parent=MsaT015385.1

Gene Sequence

>MsaT015385.1

ATGAACAGAAATAATAAGGCATATCCTTATGCCTCTAGAAAGCCTGAGAAAGTTAAAAAGAAGATCAACTTTATAAAAGGGCAATGGACAGTAGAAGAAGATCGGTTGTTGGTTCAGCTGGTTGGAGAACATGGTTTGAGAAAATGGTCTCATATTGCTGAGAATTTGCCTGGTAGAATAGGAAAACAATGCAGAGAGAGATGGCATAATCATCTAAAGCCTGACATTAAGAAGGACATATGGAGTGAGGAAGAGGACAACATATTGATCAAAGCACATGAAGAGATAGGAAACAAATGGGCGGAGATAGCTAAAAGGTTACCAGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAATACTCCAAAAGAAAGGGTAGATCAAAGTACCCTAAAGGAACTCTTCTACAAAAATATATCAAGAGCTTGAACCTCGACGAAAACCCTCCCAAAGATTATAGAAGAAAACCTTCAGCTAATGCTATAAAAAACAAAACCAACAGAAGCACAACAATATCCTCTCAGTCTCAACAAACTGAACAATTTTTTCCCAATGATCAGTGTTTGGTACCAACTTGTGATTTTGATGATGTCCCGGATTTTTCTTTCGATGAGAATTTGTTTCAAAATGGGTGTAGCATTGATTCTCTACTAGATGATATGCAATGTGCTGAAGCTGATCAAATTATGGAAGGAAAAAAACATTTTGATGTTGAGACAGAAATGCCACTAGATATTATGGAATCTATGCTTGGAGTTGAAGTTAAGAAGGAGATGGATTTGATGGAGATGGTTTTTTCAGGTCAACGAAAATTTTCAGGTGACTCATATTTTGGTAATGACATCAACATTGGTTTGTGA

Protein sequence

>MsaT015385.1

MNRNNKAYPYASRKPEKVKKKINFIKGQWTVEEDRLLVQLVGEHGLRKWSHIAENLPGRIGKQCRERWHNHLKPDIKKDIWSEEEDNILIKAHEEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKGRSKYPKGTLLQKYIKSLNLDENPPKDYRRKPSANAIKNKTNRSTTISSQSQQTEQFFPNDQCLVPTCDFDDVPDFSFDENLFQNGCSIDSLLDDMQCAEADQIMEGKKHFDVETEMPLDIMESMLGVEVKKEMDLMEMVFSGQRKFSGDSYFGNDINIGL*