AlfalfaGEDB | MsaG015389

M. sativa ssp. caerulea / MsaG015389

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015389	XP_003601260.2	98.810	336	4	0	1	336	1	336	0.0	690

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015389	sp\|Q9FM03\|DOF56_ARATH	42.748	393	145	23	1	334	1	372	1.25e-54	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015389	tr\|G7J5F5\|G7J5F5_MEDTR	98.810	336	4	0	1	336	1	336	0.0	690

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015389	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015389	MtrunA17_Chr3g0117601	98.810	336	4	0	1	336	1	336	0.0	690
MsaG015389	MtrunA17_Chr3g0127201	34.615	312	142	15	43	324	8	287	7.81e-39	139
MsaG015389	MtrunA17_Chr4g0030051	55.039	129	42	3	39	159	21	141	4.24e-36	132
MsaG015389	MtrunA17_Chr2g0326001	54.331	127	45	4	38	155	19	141	9.38e-36	131
MsaG015389	MtrunA17_Chr8g0346551	52.800	125	44	4	45	158	10	130	1.52e-35	130
MsaG015389	MtrunA17_Chr4g0031411	58.491	106	37	3	44	142	55	160	2.30e-34	128
MsaG015389	MtrunA17_Chr2g0328021	72.603	73	18	1	50	122	51	121	6.87e-34	126
MsaG015389	MtrunA17_Chr1g0188851	53.125	128	46	5	41	163	25	143	1.22e-33	125
MsaG015389	MtrunA17_Chr8g0374251	66.197	71	24	0	61	131	68	138	2.90e-31	120
MsaG015389	MtrunA17_Chr4g0010151	69.333	75	20	2	44	115	62	136	9.85e-31	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015389	AT5G62940.1	42.748	393	145	23	1	334	1	372	1.27e-55	186
MsaG015389	AT5G60200.1	66.292	89	27	3	33	121	30	115	2.49e-35	129
MsaG015389	AT1G51700.1	47.656	128	54	2	56	170	28	155	7.09e-33	121
MsaG015389	AT2G28510.1	56.364	110	35	2	63	160	50	158	5.21e-32	121
MsaG015389	AT3G45610.1	43.373	166	68	7	54	212	32	178	2.41e-31	118
MsaG015389	AT4G24060.1	50.000	122	46	2	50	156	42	163	2.72e-31	120
MsaG015389	AT5G02460.1	70.667	75	19	2	44	115	75	149	5.15e-31	121
MsaG015389	AT3G55370.1	65.000	80	25	2	43	119	55	134	7.19e-31	119
MsaG015389	AT3G55370.2	65.000	80	25	2	43	119	55	134	8.81e-31	119
MsaG015389	AT3G55370.3	65.000	80	25	2	43	119	100	179	1.30e-30	119

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Find 89 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGTTGAAGATCTTT+AGG	0.198842	3:+86313791	None:intergenic
AAAGGTCAGTCATTTGGGTA+TGG	0.536234	3:-86313296	MsaT015389.1:CDS
AAGAAAGTTGAAGATCTTTA+GGG	0.315430	3:+86313792	None:intergenic
AATATGGGTGTTGGGATTGG+AGG	0.481246	3:-86313554	MsaT015389.1:CDS
AATCACACCTTGGACATTTA+AGG	0.155190	3:+86314041	None:intergenic
AATGCATGATGAAAATTCTG+TGG	0.671096	3:+86313503	None:intergenic
AATTCACGATGAGTCAGGAA+TGG	0.596611	3:-86314155	MsaT015389.1:CDS
ACAACAAACCCTTTGATCAA+CGG	0.565654	3:-86313236	MsaT015389.1:CDS
ACACTTAGGAACATCCCAGT+TGG	0.662546	3:-86313923	MsaT015389.1:CDS
ACCTATCCCTTAAATGTCCA+AGG	0.564253	3:-86314048	MsaT015389.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86313232	86314705	86313232	ID=MsaG015389
Chr3	mRNA	86313232	86314705	86313232	ID=MsaT015389.1;Parent=MsaG015389
Chr3	exon	86313232	86314182	86313232	ID=MsaT015389.1.exon2;Parent=MsaT015389.1
Chr3	CDS	86313232	86314182	86313232	ID=cds.MsaT015389.1;Parent=MsaT015389.1
Chr3	exon	86314646	86314705	86314646	ID=MsaT015389.1.exon1;Parent=MsaT015389.1
Chr3	CDS	86314646	86314705	86314646	ID=cds.MsaT015389.1;Parent=MsaT015389.1

Gene Sequence

>MsaT015389.1

ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCAATGTCTGGTGACATGCTAACATGTTCAAGGCCATCATCCATGATAGAGAGGAGGCTAAGACCACCACATGACCTATCCCTTAAATGTCCAAGGTGTGATTCAACTCACACCAAATTCTGTTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACAAAAGGAGGAACACTTAGGAACATCCCAGTTGGTGGAGGCTGTAGAAAAAACAAAAAAGTTTCTTCCAAAAAATCAAATGATCACTTGGCTAATAATAATATTCAAAACCAACCACATCATGTACCTTCCTACCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTCTCTCACCTAAGTAACTTATTTGGAGCTAATGGAGCATTAGGAAACCCTAATTTCATGGAGAACAAGTATAGCAATGTTGGCATGCTTGAAAACCCTAGGCCTATTGACTTCATGATGGAAAGTAAGTTAGAAGGCATAATTGGGAGTAGTTCTAGAAATTTTGATAATTATTTTGGAAATAGTGATCATATGAATATGAATATGGGTGTTGGGATTGGAGGAGATATGATGAATGGACAAAATGGGTTGCCACAGAATTTTCATCATGCATTTGGTGGAATGTCATTTGATGGAGGAAACAATAGCAATGGTGCTTACTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATGAGGATCATAATGCTTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCACTTGAATGGCAACAAGATCAAGGTTGCTCTGATGCTGGGAAAGGTCAGTCATTTGGGTATGGATCATGGAGTGGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA

Protein sequence

>MsaT015389.1

MGLSSLHVCNMESSADHWLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLFGANGALGNPNFMENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFGGMSFDGGNNSNGAYLMDSCQRLMLPYDANDEDHNASIDVKPNPKLLSLEWQQDQGCSDAGKGQSFGYGSWSGMMNGYGSSTTNPLING*