AlfalfaGEDB | MsaG015411

M. sativa ssp. caerulea / MsaG015411

KEGG: K04730
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015411	XP_013461023.1	96.267	643	24	0	1	643	1	643	0.0	1281

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015411	sp\|O48788\|Y2267_ARATH	34.817	629	372	16	11	624	7	612	3.28e-99	320

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015411	tr\|A0A072UZR6\|A0A072UZR6_MEDTR	96.267	643	24	0	1	643	1	643	0.0	1281

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG015411	MsaG020708	0.816025	1.186191e-51	2.353342e-49
MsaG015411	MsaG028741	0.815494	1.555743e-51	3.045130e-49
MsaG015411	MsaG028743	0.840915	1.207988e-57	4.853180e-55
MsaG015411	MsaG013588	0.812198	8.217609e-51	1.480891e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015411	MtrunA17_Chr3g0117921	96.267	643	24	0	1	643	1	643	0.0	1281
MsaG015411	MtrunA17_Chr2g0288391	46.958	641	297	12	11	641	8	615	0.0	539
MsaG015411	MtrunA17_Chr8g0376301	43.231	458	181	9	187	642	10	390	1.09e-108	333
MsaG015411	MtrunA17_Chr1g0209521	32.154	650	350	18	31	632	32	638	1.29e-91	297
MsaG015411	MtrunA17_Chr3g0128551	33.122	631	356	18	30	637	33	620	1.30e-88	288
MsaG015411	MtrunA17_Chr6g0478621	32.591	629	376	18	51	643	44	660	6.89e-84	277
MsaG015411	MtrunA17_Chr5g0432851	33.710	620	359	20	30	635	50	631	2.48e-83	275
MsaG015411	MtrunA17_Chr5g0434551	33.608	607	352	20	51	637	46	621	4.85e-81	268
MsaG015411	MtrunA17_Chr7g0245171	31.530	647	385	18	3	632	2	607	6.35e-81	268
MsaG015411	MtrunA17_Chr1g0179521	32.322	659	380	23	11	634	4	631	7.40e-81	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015411	AT2G26730.1	34.817	629	372	16	11	624	7	612	3.33e-100	320
MsaG015411	AT2G36570.1	33.636	660	359	22	24	634	19	648	5.63e-89	291
MsaG015411	AT1G68400.1	33.712	617	344	17	51	632	51	637	1.27e-87	287
MsaG015411	AT1G48480.1	33.555	602	352	20	51	624	54	635	8.92e-86	282
MsaG015411	AT5G24100.1	31.183	651	374	18	1	624	1	604	4.21e-85	279
MsaG015411	AT1G64210.1	31.098	656	354	18	8	637	4	587	5.99e-85	278
MsaG015411	AT5G58300.3	31.898	627	372	20	30	639	49	637	7.67e-81	269
MsaG015411	AT5G58300.1	31.898	627	372	20	30	639	49	637	7.67e-81	269
MsaG015411	AT5G58300.2	31.898	627	372	20	30	639	49	637	7.67e-81	269
MsaG015411	AT3G08680.1	30.675	652	378	21	1	624	2	607	1.01e-80	268

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Find 123 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGGAAGCCTGTACA+AGG	0.594323	3:-86652719	MsaT015411.1:CDS
AAAGCTGAGGTATTGAAGAG+AGG	0.568798	3:+86653566	None:intergenic
AAAGTGGACACTCTCTTGAT+TGG	0.455074	3:-86652129	MsaT015411.1:CDS
AAATCTCGATCATCTGTCAA+AGG	0.570198	3:+86651583	None:intergenic
AAATGAGTCTAAAACAAATC+TGG	0.440308	3:-86653857	MsaT015411.1:CDS
AACATGAAGAGGCTACCATT+TGG	0.521071	3:+86652520	None:intergenic
AACCATATTCGGAAGGTTTC+CGG	0.222168	3:+86653383	None:intergenic
AACCCACAAATAAGCGAATA+TGG	0.383373	3:-86651980	MsaT015411.1:CDS
AAGAATGGTGAACTTGTTGC+AGG	0.483012	3:-86651708	MsaT015411.1:CDS
AAGAATTGGTTTAATGGCCT+TGG	0.330656	3:-86652880	MsaT015411.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86651592	86653877	86651592	ID=MsaG015411
Chr3	mRNA	86651592	86653877	86651592	ID=MsaT015411.1;Parent=MsaG015411
Chr3	exon	86651592	86652157	86651592	ID=MsaT015411.1.exon2;Parent=MsaT015411.1
Chr3	CDS	86651592	86652157	86651592	ID=cds.MsaT015411.1;Parent=MsaT015411.1
Chr3	exon	86652512	86653877	86652512	ID=MsaT015411.1.exon1;Parent=MsaT015411.1
Chr3	CDS	86652512	86653877	86652512	ID=cds.MsaT015411.1;Parent=MsaT015411.1

Gene Sequence

>MsaT015411.1

ATGAGTCTAAAACAAATCTGGTTCTGGACAGTACTCACTTTTCTGTTTCCGTTTTTTCTAAAGACCAATACAGAATCAGAAAATGTCAGAAAAGCCCTTGTCAAATTCATGCATCAACTTGAACCACCCGATCAGAATTCCATGTGGGGTTGGAACCTCACATCAGATCCATGCACTCATAACTGGCACGGCGTAACTTGCTACGCAAACAACCAATACATTAAGACTATAGTTCTTGACAACCTTTATTTCACCGGTGTTCTAGACGCTACTTCTCTTTGCATTGCTACCTCTCTTCAATACCTCAGCTTTAACAACAATTACTTACACGGTTTTATATCGGAGGATATAAAAGACTGTAAGTTCTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGCTTCCATTCCTCAACTACTTAACATGAAGCGCCTTCATGTTTCGGACAATCTCTTCACCGGAAACCTTCCGAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCACAAAACAACAACTTCACCGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAACGTCTCTAACAACAATTTACGTGGTCCTATTCCTGATGTTGGAGGTAGATTTAATGCAGATAGCTTTTATGGTAATCCTAATTTATGTGGAAAACCAATTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCATTATAAAAGACAAAAAGAAAAATCCATTTCTTGATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATTTTCATAATTTTCTTGATCTTCAAGTTGTCAAGAAAATGCATGACCAAAAATAGAGAAACAGGATTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGCGGTGGCGTTGTTATTGTTGGTGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAATTGGTTTAATGGCCTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAGGATTTGTTAAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGCCTGTACAAGGTTATGCTAGATAATGGTGTGCTTTTGGCTGTGAAGAGGATCAAGGATTGGGGGATTTCGAAGCATGAATTCGAGAGAAGGATGAACTTGATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCGTATGAATATCTTCCAAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGTGGACACTCTCTTGATTGGAGGAGCAGACTAGATGTTGCTGCTAAGATCGCTGAAGCTTTGGCCTATATGCATGAAGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGCAATATTCTGTTTGACAAGAATATGAACCCACAAATAAGCGAATATGGTCTAATGGTCGTGGAAAATCAAGGCGTCATCTCTCATATCAGAAGCCGCAGAAACAAAAATATGTCTGCAGCAGCCACCTTCAGAGCTGATATATATTCCTTTGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAAAGAATGGTGAACTTGTTGCAGGTGGCACTAAAATGCATCAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCGCTCATCACAAATGCGTTGAAAGATGAAGACGAAAAATCTGTATCCTTTGACAGATGA

Protein sequence

>MsaT015411.1

MSLKQIWFWTVLTFLFPFFLKTNTESENVRKALVKFMHQLEPPDQNSMWGWNLTSDPCTHNWHGVTCYANNQYIKTIVLDNLYFTGVLDATSLCIATSLQYLSFNNNYLHGFISEDIKDCKFLTHLLLSGNKFSGNLPASIPQLLNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPIPDVGGRFNADSFYGNPNLCGKPISNSSCPPPPPPPPPIIIKDKKKNPFLDDLPIYSGYIVIGLIFIIFLIFKLSRKCMTKNRETGLDHVEKKDMSQDTSGGVVIVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMVVENQGVISHIRSRRNKNMSAAATFRADIYSFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR*