AlfalfaGEDB | MsaG015432

M. sativa ssp. caerulea / MsaG015432

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	XP_013461058.1	97.500	200	5	0	1	200	1	200	2.19e-136	390

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	sp\|Q9SB04\|ARR5_ARATH	64.088	181	59	2	5	179	2	182	3.25e-76	229

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	tr\|A0A072UZU9\|A0A072UZU9_MEDTR	97.500	200	5	0	1	200	1	200	1.05e-136	390

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015432	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	MtrunA17_Chr3g0118211	97.500	200	5	0	1	200	1	200	2.02e-140	390
MsaG015432	MtrunA17_Chr4g0059571	68.837	215	51	5	1	200	1	214	2.95e-89	261
MsaG015432	MtrunA17_Chr1g0170741	61.688	154	53	2	22	172	7	157	3.30e-60	186
MsaG015432	MtrunA17_Chr5g0414931	65.493	142	45	1	17	154	10	151	2.46e-59	186
MsaG015432	MtrunA17_Chr7g0256551	53.086	162	67	2	18	170	4	165	1.76e-54	173
MsaG015432	MtrunA17_Chr3g0082861	52.147	163	69	2	20	173	1	163	3.52e-52	165
MsaG015432	MtrunA17_Chr8g0352871	55.034	149	57	2	18	157	4	151	1.19e-50	161
MsaG015432	MtrunA17_Chr3g0128691	59.091	132	50	2	24	152	19	149	4.87e-50	159
MsaG015432	MtrunA17_Chr3g0124861	51.678	149	53	2	22	152	21	168	5.91e-47	154
MsaG015432	MtrunA17_Chr4g0021731	54.651	86	39	0	15	100	3	88	1.57e-25	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	AT3G48100.1	64.088	181	59	2	5	179	2	182	3.30e-77	229
MsaG015432	AT1G74890.1	75.839	149	30	2	22	166	17	163	1.99e-73	221
MsaG015432	AT5G62920.1	75.000	144	35	1	23	166	25	167	2.44e-72	217
MsaG015432	AT1G19050.1	67.516	157	49	1	3	157	2	158	4.34e-71	215
MsaG015432	AT1G59940.1	63.218	174	45	4	1	157	1	172	3.03e-68	208
MsaG015432	AT1G59940.2	63.218	174	45	4	1	157	93	264	8.56e-67	208
MsaG015432	AT1G10470.3	66.892	148	49	0	14	161	11	158	3.01e-65	201
MsaG015432	AT1G10470.1	73.282	131	35	0	22	152	33	163	7.29e-65	201
MsaG015432	AT3G57040.2	57.931	145	51	1	18	152	4	148	5.69e-55	175
MsaG015432	AT3G57040.1	57.931	145	51	1	18	152	4	148	5.69e-55	175

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Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATCTTACCTATCAATTC+GGG	0.507592	3:-86862696	None:intergenic
AATATGGTTACAGGGTGTGA+AGG	0.609461	3:+86862389	MsaT015432.1:intron
AATTCATATCCTGTCATCCC+AGG	0.536075	3:-86862441	None:intergenic
ACACCAGCACCACTTACTTC+CGG	0.479536	3:-86861988	None:intergenic
ACATCTTGACCCGAATTGAT+AGG	0.448548	3:+86862687	MsaT015432.1:CDS
ACTAGAGCTTTACAGTATCT+TGG	0.363036	3:+86862225	MsaT015432.1:CDS
AGAGGTGAAGGAAAGAAAGT+CGG	0.518178	3:+86864052	MsaT015432.1:CDS
AGAGTTGCACGTTCTTGCAG+TGG	0.580799	3:+86862014	MsaT015432.1:CDS
AGCTTTACAGTATCTTGGTT+TGG	0.366392	3:+86862230	MsaT015432.1:CDS
ATGAATCAATGGTTATAGTC+TGG	0.434730	3:-86864191	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86861952	86864201	86861952	ID=MsaG015432
Chr3	mRNA	86861952	86864201	86861952	ID=MsaT015432.1;Parent=MsaG015432
Chr3	exon	86861952	86862096	86861952	ID=MsaT015432.1.exon1;Parent=MsaT015432.1
Chr3	CDS	86861952	86862096	86861952	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86862205	86862281	86862205	ID=MsaT015432.1.exon2;Parent=MsaT015432.1
Chr3	CDS	86862205	86862281	86862205	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86862402	86862479	86862402	ID=MsaT015432.1.exon3;Parent=MsaT015432.1
Chr3	CDS	86862402	86862479	86862402	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86862638	86862708	86862638	ID=MsaT015432.1.exon4;Parent=MsaT015432.1
Chr3	CDS	86862638	86862708	86862638	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86863970	86864201	86863970	ID=MsaT015432.1.exon5;Parent=MsaT015432.1
Chr3	CDS	86863970	86864201	86863970	ID=cds.MsaT015432.1;Parent=MsaT015432.1

Gene Sequence

>MsaT015432.1

ATGGCTACTGCTGGTGATGTTCTCAGGCAGAGTTTACCGGAAGTAAGTGGTGCTGGTGTTGGAGAGTTGCACGTTCTTGCAGTGGATGATAGTTTTGTTGATCGCAAAGTCATTGAAAGGTTGCTTAAATTCACTTCTTGCAAAGTTACTGTTGTTGAGAGTGGAACTAGAGCTTTACAGTATCTTGGTTTGGATGGTGACACGAGTTCCATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACAGATTATTCTATGCCTGGGATGACAGGATATGAATTGCTCAAGAAGATTAAGGAATCATCTGTATTTAGAGAAATTCCAGTGGTGGTTATGTCCTCTGAGAACATCTTGACCCGAATTGATAGTTGCTTGGAAGAAGGAGCAGAGGAGTTTCTATTGAAACCTGTCAAGTTGGCAGATGTGAAACGCTTAACAGATTTCATAATGAGAGGTGAAGGAAAGAAAGTCGGAGGAAAAATATCTCAAAAAAGAAGTCGGTCAGATGATTGTATTTCATCTCTATCAACGGCTTGTTCAACATGTGATCTGTCGCCATTGTCACCGTCTGCAATGTCGTCAAAGAAATCCAGACTATAA

Protein sequence

>MsaT015432.1

MATAGDVLRQSLPEVSGAGVGELHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLADVKRLTDFIMRGEGKKVGGKISQKRSRSDDCISSLSTACSTCDLSPLSPSAMSSKKSRL*