AlfalfaGEDB | MsaG015432

M. sativa ssp. caerulea / MsaG015432

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	XP_013461058.1	97.500	200	5	0	1	200	1	200	2.19e-136	390

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	sp\|Q9SB04\|ARR5_ARATH	64.088	181	59	2	5	179	2	182	3.25e-76	229

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	tr\|A0A072UZU9\|A0A072UZU9_MEDTR	97.500	200	5	0	1	200	1	200	1.05e-136	390

TFs/TRs:

Gene ID	Type	Classification
MsaG015432	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	MtrunA17_Chr3g0118211	97.500	200	5	0	1	200	1	200	2.02e-140	390
MsaG015432	MtrunA17_Chr4g0059571	68.837	215	51	5	1	200	1	214	2.95e-89	261
MsaG015432	MtrunA17_Chr1g0170741	61.688	154	53	2	22	172	7	157	3.30e-60	186
MsaG015432	MtrunA17_Chr5g0414931	65.493	142	45	1	17	154	10	151	2.46e-59	186
MsaG015432	MtrunA17_Chr7g0256551	53.086	162	67	2	18	170	4	165	1.76e-54	173
MsaG015432	MtrunA17_Chr3g0082861	52.147	163	69	2	20	173	1	163	3.52e-52	165
MsaG015432	MtrunA17_Chr8g0352871	55.034	149	57	2	18	157	4	151	1.19e-50	161
MsaG015432	MtrunA17_Chr3g0128691	59.091	132	50	2	24	152	19	149	4.87e-50	159
MsaG015432	MtrunA17_Chr3g0124861	51.678	149	53	2	22	152	21	168	5.91e-47	154
MsaG015432	MtrunA17_Chr4g0021731	54.651	86	39	0	15	100	3	88	1.57e-25	94.7
MsaG015432	MtrunA17_Chr3g0127941	29.054	148	96	2	23	170	56	194	3.53e-15	73.2
MsaG015432	MtrunA17_Chr8g0345901	28.906	128	82	1	25	152	38	156	2.16e-13	68.2
MsaG015432	MtrunA17_Chr4g0030271	30.827	133	83	1	20	152	86	209	3.16e-13	67.8
MsaG015432	MtrunA17_Chr1g0149851	28.662	157	97	4	23	179	9	150	6.93e-12	63.5
MsaG015432	MtrunA17_Chr1g0181811	29.323	133	85	2	20	152	82	205	1.09e-11	63.2
MsaG015432	MtrunA17_Chr7g0275401	29.054	148	86	3	23	170	9	137	3.51e-11	60.8
MsaG015432	MtrunA17_Chr7g0276361	25.385	130	88	1	23	152	14	134	4.91e-11	61.2
MsaG015432	MtrunA17_Chr7g0275891	30.405	148	85	4	23	170	9	138	6.48e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015432	AT3G48100.1	64.088	181	59	2	5	179	2	182	3.30e-77	229
MsaG015432	AT1G74890.1	75.839	149	30	2	22	166	17	163	1.99e-73	221
MsaG015432	AT5G62920.1	75.000	144	35	1	23	166	25	167	2.44e-72	217
MsaG015432	AT1G19050.1	67.516	157	49	1	3	157	2	158	4.34e-71	215
MsaG015432	AT1G59940.1	63.218	174	45	4	1	157	1	172	3.03e-68	208
MsaG015432	AT1G59940.2	63.218	174	45	4	1	157	93	264	8.56e-67	208
MsaG015432	AT1G10470.3	66.892	148	49	0	14	161	11	158	3.01e-65	201
MsaG015432	AT1G10470.1	73.282	131	35	0	22	152	33	163	7.29e-65	201
MsaG015432	AT3G57040.2	57.931	145	51	1	18	152	4	148	5.69e-55	175
MsaG015432	AT3G57040.1	57.931	145	51	1	18	152	4	148	5.69e-55	175
MsaG015432	AT2G41310.1	57.047	149	56	2	21	161	7	155	5.89e-55	174
MsaG015432	AT2G40670.1	59.259	135	50	2	22	152	28	161	4.42e-52	165
MsaG015432	AT3G56380.1	58.333	132	54	1	22	152	19	150	8.55e-52	164
MsaG015432	AT2G40670.2	58.824	136	50	3	22	152	28	162	2.80e-50	160
MsaG015432	AT3G56380.2	57.895	133	54	2	22	152	19	151	5.08e-50	159
MsaG015432	AT1G10470.2	66.129	62	21	0	100	161	35	96	5.69e-21	86.3
MsaG015432	AT2G07440.1	57.377	61	26	0	101	161	9	69	1.17e-15	70.9
MsaG015432	AT5G07210.2	29.545	176	99	6	1	174	1	153	8.25e-14	69.7
MsaG015432	AT5G24470.1	30.000	130	82	2	23	152	50	170	9.53e-14	69.3
MsaG015432	AT2G46790.3	27.692	130	85	1	23	152	37	157	6.88e-13	67.0
MsaG015432	AT2G46790.1	27.692	130	85	1	23	152	37	157	8.61e-13	66.6
MsaG015432	AT5G60100.7	31.579	133	82	2	20	152	61	184	3.07e-12	64.7
MsaG015432	AT5G60100.6	31.579	133	82	2	20	152	61	184	3.07e-12	64.7
MsaG015432	AT5G60100.4	31.579	133	82	2	20	152	61	184	3.07e-12	64.7
MsaG015432	AT5G60100.2	31.579	133	82	2	20	152	61	184	3.20e-12	65.1
MsaG015432	AT5G60100.5	31.579	133	82	2	20	152	61	184	4.82e-12	64.3
MsaG015432	AT5G60100.3	31.579	133	82	2	20	152	61	184	4.82e-12	64.3
MsaG015432	AT5G60100.1	31.579	133	82	2	20	152	61	184	4.82e-12	64.3
MsaG015432	AT1G67710.1	29.655	145	90	3	14	158	2	134	2.17e-11	62.4
MsaG015432	AT5G07210.1	28.261	184	99	7	1	174	1	161	2.66e-11	62.4

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAGATCTTACCTATCAATT+CGG	0.347926	3:-86862697	None:intergenic
TGAATTGCTCAAGAAGATTA+AGG	0.356380	3:+86862458	MsaT015432.1:CDS
ACTAGAGCTTTACAGTATCT+TGG	0.363036	3:+86862225	MsaT015432.1:CDS
AGCTTTACAGTATCTTGGTT+TGG	0.366392	3:+86862230	MsaT015432.1:CDS
CTACTGCTGGTGATGTTCTC+AGG	0.387823	3:+86861956	MsaT015432.1:CDS
TGTTCTCAGGCAGAGTTTAC+CGG	0.414947	3:+86861969	MsaT015432.1:CDS
TTCACATCTGCCAACTTGAC+AGG	0.430476	3:-86864007	None:intergenic
ATGAATCAATGGTTATAGTC+TGG	0.434730	3:-86864191	None:intergenic
ACATCTTGACCCGAATTGAT+AGG	0.448548	3:+86862687	MsaT015432.1:CDS
ATGACAGATTATTCTATGCC+TGG	0.452458	3:+86862423	MsaT015432.1:CDS
TATTCTATGCCTGGGATGAC+AGG	0.453139	3:+86862432	MsaT015432.1:CDS
CTTAAATTCACTTCTTGCAA+AGG	0.463478	3:+86862075	MsaT015432.1:CDS
ATTGACAGTTGCTTGGAAGA+AGG	0.475916	3:+86863962	MsaT015432.1:intron
ACACCAGCACCACTTACTTC+CGG	0.479536	3:-86861988	None:intergenic
TTACAGTATCTTGGTTTGGA+TGG	0.481557	3:+86862234	MsaT015432.1:CDS
GATGGTGACACGAGTTCCAT+TGG	0.497003	3:+86862252	MsaT015432.1:CDS
AAGATCTTACCTATCAATTC+GGG	0.507592	3:-86862696	None:intergenic
TTTGTTCATTGACAGTTGCT+TGG	0.513588	3:+86863955	MsaT015432.1:intron
AGAGGTGAAGGAAAGAAAGT+CGG	0.518178	3:+86864052	MsaT015432.1:CDS
TTTGCTTACATCAAAACCAA+TGG	0.528283	3:-86862268	None:intergenic
TTACCGGAAGTAAGTGGTGC+TGG	0.532656	3:+86861985	MsaT015432.1:CDS
GAAGTAAGTGGTGCTGGTGT+TGG	0.533059	3:+86861991	MsaT015432.1:CDS
TTGATCGCAAAGTCATTGAA+AGG	0.535022	3:+86862049	MsaT015432.1:CDS
GCAGTTACTGTTGTTGAGAG+TGG	0.535906	3:+86862201	MsaT015432.1:intron
AATTCATATCCTGTCATCCC+AGG	0.536075	3:-86862441	None:intergenic
TTGTATTTCATCTCTATCAA+CGG	0.543618	3:+86864111	MsaT015432.1:CDS
TGACAGATTATTCTATGCCT+GGG	0.547632	3:+86862424	MsaT015432.1:CDS
TCAGAGGACATAACCACCAC+TGG	0.556667	3:-86862662	None:intergenic
TCTATTGAAACCTGTCAAGT+TGG	0.561378	3:+86863997	MsaT015432.1:CDS
TTCTTTGACGACATTGCAGA+CGG	0.571495	3:-86864166	None:intergenic
GGTGAAGGAAAGAAAGTCGG+AGG	0.571633	3:+86864055	MsaT015432.1:CDS
AGAGTTGCACGTTCTTGCAG+TGG	0.580799	3:+86862014	MsaT015432.1:CDS
ATTTAGAGAAATTCCAGTGG+TGG	0.593101	3:+86862649	MsaT015432.1:CDS
GATTTCATAATGAGAGGTGA+AGG	0.593144	3:+86864040	MsaT015432.1:CDS
TTAACAGATTTCATAATGAG+AGG	0.593540	3:+86864034	MsaT015432.1:CDS
GACATTGCAGACGGTGACAA+TGG	0.595350	3:-86864157	None:intergenic
CAGAGTTTACCGGAAGTAAG+TGG	0.596307	3:+86861979	MsaT015432.1:CDS
TTGCTTGGAAGAAGGAGCAG+AGG	0.596704	3:+86863970	MsaT015432.1:CDS
AATATGGTTACAGGGTGTGA+AGG	0.609461	3:+86862389	MsaT015432.1:intron
TGTATTTAGAGAAATTCCAG+TGG	0.707997	3:+86862646	MsaT015432.1:CDS
TCGGGTCAAGATGTTCTCAG+AGG	0.723155	3:-86862678	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	86861952	86864201	86861952	ID=MsaG015432
Chr3	mRNA	86861952	86864201	86861952	ID=MsaT015432.1;Parent=MsaG015432
Chr3	exon	86861952	86862096	86861952	ID=MsaT015432.1.exon1;Parent=MsaT015432.1
Chr3	CDS	86861952	86862096	86861952	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86862205	86862281	86862205	ID=MsaT015432.1.exon2;Parent=MsaT015432.1
Chr3	CDS	86862205	86862281	86862205	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86862402	86862479	86862402	ID=MsaT015432.1.exon3;Parent=MsaT015432.1
Chr3	CDS	86862402	86862479	86862402	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86862638	86862708	86862638	ID=MsaT015432.1.exon4;Parent=MsaT015432.1
Chr3	CDS	86862638	86862708	86862638	ID=cds.MsaT015432.1;Parent=MsaT015432.1
Chr3	exon	86863970	86864201	86863970	ID=MsaT015432.1.exon5;Parent=MsaT015432.1
Chr3	CDS	86863970	86864201	86863970	ID=cds.MsaT015432.1;Parent=MsaT015432.1

Gene Sequence

>MsaT015432.1

ATGGCTACTGCTGGTGATGTTCTCAGGCAGAGTTTACCGGAAGTAAGTGGTGCTGGTGTTGGAGAGTTGCACGTTCTTGCAGTGGATGATAGTTTTGTTGATCGCAAAGTCATTGAAAGGTTGCTTAAATTCACTTCTTGCAAAGTTACTGTTGTTGAGAGTGGAACTAGAGCTTTACAGTATCTTGGTTTGGATGGTGACACGAGTTCCATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACAGATTATTCTATGCCTGGGATGACAGGATATGAATTGCTCAAGAAGATTAAGGAATCATCTGTATTTAGAGAAATTCCAGTGGTGGTTATGTCCTCTGAGAACATCTTGACCCGAATTGATAGTTGCTTGGAAGAAGGAGCAGAGGAGTTTCTATTGAAACCTGTCAAGTTGGCAGATGTGAAACGCTTAACAGATTTCATAATGAGAGGTGAAGGAAAGAAAGTCGGAGGAAAAATATCTCAAAAAAGAAGTCGGTCAGATGATTGTATTTCATCTCTATCAACGGCTTGTTCAACATGTGATCTGTCGCCATTGTCACCGTCTGCAATGTCGTCAAAGAAATCCAGACTATAA

Protein sequence

>MsaT015432.1

MATAGDVLRQSLPEVSGAGVGELHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLADVKRLTDFIMRGEGKKVGGKISQKRSRSDDCISSLSTACSTCDLSPLSPSAMSSKKSRL*