AlfalfaGEDB | MsaG015443

M. sativa ssp. caerulea / MsaG015443

KEGG: K14514
GO: GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF04873.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015443	GAU51213.1	71.625	437	85	11	1	429	1	406	0.0	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015443	sp\|O24606\|EIN3_ARATH	71.739	184	32	4	3	177	1	173	6.41e-78	256
MsaG015443	sp\|O24606\|EIN3_ARATH	39.914	233	115	9	180	409	321	531	6.00e-38	148

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015443	tr\|A0A2Z6P8I7\|A0A2Z6P8I7_TRISU	71.625	437	85	11	1	429	1	406	0.0	582

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015443	TF	EIL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015443	MtrunA17_Chr3g0118361	91.085	258	10	4	175	429	316	563	1.98e-165	479
MsaG015443	MtrunA17_Chr3g0118361	97.175	177	4	1	1	177	1	176	2.19e-106	327
MsaG015443	MtrunA17_Chr5g0440591	79.661	177	31	4	2	177	1	173	1.18e-86	276
MsaG015443	MtrunA17_Chr5g0440591	51.471	272	108	9	161	429	305	555	2.03e-75	246
MsaG015443	MtrunA17_Chr2g0329151	68.293	123	37	1	41	161	27	149	9.87e-52	183
MsaG015443	MtrunA17_Chr3g0124291	61.818	110	39	1	49	158	29	135	2.21e-42	154
MsaG015443	MtrunA17_Chr8g0382561	56.637	113	46	1	46	158	16	125	2.70e-37	141
MsaG015443	MtrunA17_Chr6g0476301	65.079	63	22	0	106	168	1	63	4.83e-24	102
MsaG015443	MtrunA17_Chr6g0473191	60.274	73	26	1	106	175	1	73	1.05e-23	100
MsaG015443	MtrunA17_Chr6g0476291	57.534	73	28	1	106	175	1	73	5.56e-23	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015443	AT3G20770.1	71.739	184	32	4	3	177	1	173	6.51e-79	256
MsaG015443	AT3G20770.1	39.914	233	115	9	180	409	321	531	6.10e-39	148
MsaG015443	AT2G27050.1	68.478	184	41	5	2	177	1	175	6.98e-73	239
MsaG015443	AT2G27050.1	37.743	257	121	11	180	429	325	549	1.30e-34	135
MsaG015443	AT1G73730.1	63.636	132	42	2	43	170	29	158	1.47e-49	177
MsaG015443	AT1G73730.2	63.636	132	42	2	43	170	17	146	1.48e-49	177
MsaG015443	AT5G21120.3	47.458	177	87	3	2	175	1	174	2.93e-37	142
MsaG015443	AT5G21120.3	50.000	58	28	1	239	295	359	416	5.22e-12	68.2
MsaG015443	AT5G21120.1	47.458	177	87	3	2	175	1	174	2.93e-37	142
MsaG015443	AT5G21120.1	50.000	58	28	1	239	295	359	416	5.22e-12	68.2

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Find 133 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTGTGACCGGGGCAT+CGG	0.525234	3:+87042458	MsaT015443.1:CDS
AAAGGAGCAAGTCAAACCGA+AGG	0.648111	3:+87042281	MsaT015443.1:CDS
AAGATGTCAAGGGCTCAAGA+TGG	0.596334	3:+87042357	MsaT015443.1:CDS
AAGCTGACAATGCAATTCCG+GGG	0.692590	3:+87042553	MsaT015443.1:CDS
AAGGCTCAAGGGTTTGTTTA+CGG	0.347915	3:+87042417	MsaT015443.1:CDS
AAGGTTAGGTTTGACCGCAA+CGG	0.602662	3:+87042507	MsaT015443.1:CDS
AATCCCAGGAACAGGCAAGG+AGG	0.672658	3:+87042331	MsaT015443.1:CDS
AATGACTGAGGATATATGAC+TGG	0.604420	3:-87043431	None:intergenic
AATGAGTATGATGTCGATGG+GGG	0.671000	3:+87043050	MsaT015443.1:CDS
AATGATGGAGGCAATCCGAT+CGG	0.634526	3:+87042579	MsaT015443.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	87042078	87043790	87042078	ID=MsaG015443
Chr3	mRNA	87042078	87043790	87042078	ID=MsaT015443.1;Parent=MsaG015443
Chr3	exon	87042078	87042600	87042078	ID=MsaT015443.1.exon1;Parent=MsaT015443.1
Chr3	CDS	87042078	87042600	87042078	ID=cds.MsaT015443.1;Parent=MsaT015443.1
Chr3	exon	87043024	87043790	87043024	ID=MsaT015443.1.exon2;Parent=MsaT015443.1
Chr3	CDS	87043024	87043790	87043024	ID=cds.MsaT015443.1;Parent=MsaT015443.1

Gene Sequence

>MsaT015443.1

ATGATGATGATGTTTGATCATGAGATGGCTCTATCTGGTGATCTGGAAGTGTTTTCTGCTCCCCAACCCCAAGTTGAGGGGGATATTACCGCCCGGCTAACTGAACCTGAGGCGATGGTTGACGAAGATTACAGCGACGATGATATTGATGTTGCCGAGCTTGAGAGGAGGATGTGGAGGGATAAGGTGCTTCTCAAGCGATTAAAGGAGCAAGTCAAACCGAAGGAAGGATCCGATGCGGCCAAGCAGAGGCAATCCCAGGAACAGGCAAGGAGGAAAAAGATGTCAAGGGCTCAAGATGGAATCTTGAAGTACATGCTGAAAATGATGGAGGTTTGCAAGGCTCAAGGGTTTGTTTACGGGATCATTCCCGAGAAAGGAAAGCCTGTGACCGGGGCATCGGATAATCTCCGCGAATGGTGGAAGGATAAGGTTAGGTTTGACCGCAACGGTCCTGCTGCCATATCCAAGTACCAAGCTGACAATGCAATTCCGGGGAAGAATGATGGAGGCAATCCGATCGCTGGACCTTTCGGCATCAATGAAGGCAATGAGTATGATGTCGATGGGGGAGAAGAGGAGCCGAATTTTGATGTGGAGGAACGGAAACCTGAGAATCTTCTTCATCAATCCAACATTGGGATGATGGAGAGAATGAGAAATGTAAGACTGCCATTTCAGCAGACTTTCGCAATGAAGGAAGAGGCTGTGACCAACTTGGATTTCGTGAGGAAGCGGAAGATCTCTGGTGAATTTAACATGATGGATCCTAAAATTTTCACTTGCCAACACTCAACATGTCCTTATAGCCAAGCTCACATCGGTTTTCCAGACAGGGCTTCTAGGGATACTCATCAATTGAGTTGTCCATATAGAGGCTCTTCTTCATCTGATTTTGGTGGTCCAAGTTTTCATGCTAATGAGGTAAAACCAGTCATATATCCTCAGTCATTCGTTCAACCGAAACCAATGGCTCAGCCGGTTAATATGGTTCCACCTTCCATCGATATAACTGGACTTGGAGTTTCTGAAGATGGTGAGAAAAGGATTGGTGGCCTCATGACTGTCTATGATTCAGATATTCAAGGCAACATGAATTTAACTTCTGGCAGCCACTTAACCGCAGCGGAAAATCACATCTTACCGCAAGCTAGCAGCATTCAGCAGCAGCATGAGAATTACTTCAGGGGTCAAGGAATGGTGATGGAAGGAAACATGTTTGAAGAAACCAACATGTCCAATAACAATCATCATCACATGTTTGCAAGAGATGAAGGTCAATTTGACTAA

Protein sequence

>MsaT015443.1

MMMMFDHEMALSGDLEVFSAPQPQVEGDITARLTEPEAMVDEDYSDDDIDVAELERRMWRDKVLLKRLKEQVKPKEGSDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAISKYQADNAIPGKNDGGNPIAGPFGINEGNEYDVDGGEEEPNFDVEERKPENLLHQSNIGMMERMRNVRLPFQQTFAMKEEAVTNLDFVRKRKISGEFNMMDPKIFTCQHSTCPYSQAHIGFPDRASRDTHQLSCPYRGSSSSDFGGPSFHANEVKPVIYPQSFVQPKPMAQPVNMVPPSIDITGLGVSEDGEKRIGGLMTVYDSDIQGNMNLTSGSHLTAAENHILPQASSIQQQHENYFRGQGMVMEGNMFEETNMSNNNHHHMFARDEGQFD*