AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015562


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015562 MtrunA17_Chr3g0119901 98.551 207 3 0 1 207 1 207 4.09e-151 417
MsaG015562 MtrunA17_Chr3g0085241 83.810 210 27 1 4 206 36 245 5.59e-131 368
MsaG015562 MtrunA17_Chr8g0355091 49.746 197 95 1 1 197 1 193 1.90e-66 204
MsaG015562 MtrunA17_Chr1g0206721 58.788 165 61 2 1 165 1 158 5.23e-66 203
MsaG015562 MtrunA17_Chr1g0206991 54.023 174 80 0 1 174 1 174 2.28e-65 199
MsaG015562 MtrunA17_Chr1g0206701 51.309 191 83 1 1 181 1 191 6.98e-65 200
MsaG015562 MtrunA17_Chr3g0099421 58.125 160 67 0 1 160 26 185 1.06e-64 200
MsaG015562 MtrunA17_Chr1g0208561 53.552 183 83 1 1 181 1 183 3.08e-64 198
MsaG015562 MtrunA17_Chr2g0325971 54.098 183 82 1 1 181 1 183 1.76e-63 196
MsaG015562 MtrunA17_Chr2g0292791 56.875 160 69 0 1 160 1 160 5.61e-63 195
MsaG015562 MtrunA17_Chr3g0089141 53.005 183 84 1 1 181 1 183 6.57e-63 194
MsaG015562 MtrunA17_Chr1g0149391 47.208 197 100 1 1 197 1 193 5.66e-61 190
MsaG015562 MtrunA17_Chr5g0419601 51.786 168 81 0 1 168 1 168 1.33e-59 186
MsaG015562 MtrunA17_Chr1g0208581 49.727 183 90 1 1 181 1 183 7.41e-58 182
MsaG015562 MtrunA17_Chr1g0187361 49.215 191 87 2 1 181 1 191 4.70e-57 180
MsaG015562 MtrunA17_Chr1g0188671 53.012 166 78 0 1 166 39 204 5.62e-57 181
MsaG015562 MtrunA17_Chr2g0317481 48.315 178 92 0 1 178 1 178 7.83e-56 177
MsaG015562 MtrunA17_Chr2g0317451 48.315 178 92 0 1 178 1 178 7.92e-56 177
MsaG015562 MtrunA17_Chr3g0099411 63.077 130 48 0 1 130 1 130 1.24e-55 176
MsaG015562 MtrunA17_Chr5g0422941 46.701 197 101 2 1 197 1 193 1.59e-54 174
MsaG015562 MtrunA17_Chr1g0206691 51.948 154 74 0 21 174 4 157 1.83e-54 173
MsaG015562 MtrunA17_Chr5g0422421 45.026 191 95 1 1 181 1 191 3.20e-53 170
MsaG015562 MtrunA17_Chr2g0300441 42.487 193 105 1 9 201 9 195 1.10e-49 161
MsaG015562 MtrunA17_Chr2g0300421 57.031 128 55 0 1 128 1 128 1.41e-47 154
MsaG015562 MtrunA17_Chr3g0089151 55.039 129 58 0 1 129 1 129 1.55e-44 144
MsaG015562 MtrunA17_Chr7g0238991 42.458 179 95 2 24 201 36 207 1.81e-43 145
MsaG015562 MtrunA17_Chr2g0333981 39.080 174 102 1 1 174 4 173 1.54e-38 131
MsaG015562 MtrunA17_Chr3g0111931 55.769 104 46 0 21 124 2 105 2.65e-34 118
MsaG015562 MtrunA17_Chr8g0379021 37.736 159 95 1 4 162 7 161 1.00e-33 119
MsaG015562 MtrunA17_Chr4g0018951 39.264 163 87 2 2 164 5 155 2.43e-31 112
MsaG015562 MtrunA17_Chr4g0071601 37.500 184 101 3 1 174 4 183 7.71e-31 111
MsaG015562 MtrunA17_Chr4g0074101 38.919 185 81 5 8 171 1 174 2.95e-30 110
MsaG015562 MtrunA17_Chr1g0175601 38.462 169 87 4 8 171 1 157 6.29e-29 106
MsaG015562 MtrunA17_Chr1g0180591 39.412 170 84 5 8 171 1 157 7.05e-29 106
MsaG015562 MtrunA17_Chr1g0175611 42.308 130 73 1 8 137 1 128 1.17e-28 105
MsaG015562 MtrunA17_Chr4g0052061 39.645 169 85 5 8 176 1 152 2.00e-28 104
MsaG015562 MtrunA17_Chr8g0356071 43.284 134 68 3 8 138 1 129 3.03e-27 101
MsaG015562 MtrunA17_Chr1g0169761 38.158 152 82 2 8 159 1 140 3.59e-27 102
MsaG015562 MtrunA17_Chr8g0376821 43.697 119 65 1 8 126 1 117 5.98e-27 101
MsaG015562 MtrunA17_Chr1g0187351 67.188 64 21 0 21 84 4 67 7.65e-27 97.8
MsaG015562 MtrunA17_Chr8g0357771 38.889 162 72 4 8 165 1 139 2.25e-26 100
MsaG015562 MtrunA17_Chr4g0052081 33.333 156 91 2 8 162 1 144 2.72e-22 89.4
MsaG015562 MtrunA17_Chr3g0111841 62.712 59 22 0 15 73 2 60 3.89e-22 85.9
MsaG015562 MtrunA17_Chr3g0111831 49.275 69 35 0 16 84 11 79 7.68e-18 75.1
MsaG015562 MtrunA17_Chr4g0057151 35.484 124 60 3 10 123 3 116 1.75e-17 77.4
MsaG015562 MtrunA17_Chr4g0049901 47.059 85 40 2 8 92 27 106 5.73e-17 76.6
MsaG015562 MtrunA17_Chr2g0279821 42.857 84 44 1 8 91 1 80 7.41e-17 76.3
MsaG015562 MtrunA17_Chr1g0204111 44.595 74 41 0 3 76 12 85 1.14e-16 75.9
MsaG015562 MtrunA17_Chr6g0474371 48.571 70 35 1 8 76 1 70 1.41e-16 74.7
MsaG015562 MtrunA17_Chr3g0077501 46.377 69 37 0 8 76 1 69 1.89e-16 74.7
MsaG015562 MtrunA17_Chr5g0427401 47.826 69 36 0 8 76 1 69 2.40e-16 74.7
MsaG015562 MtrunA17_Chr8g0380021 27.273 209 119 5 2 178 11 218 3.66e-16 74.3
MsaG015562 MtrunA17_Chr8g0345001 28.750 160 99 3 10 162 19 170 5.12e-16 72.8
MsaG015562 MtrunA17_Chr8g0351051 43.529 85 44 2 8 90 1 83 6.58e-16 73.9
MsaG015562 MtrunA17_Chr3g0097101 46.667 75 38 1 2 76 12 84 1.26e-15 72.8
MsaG015562 MtrunA17_Chr4g0049541 32.184 174 76 5 8 167 1 146 1.46e-15 72.4
MsaG015562 MtrunA17_Chr4g0020221 45.000 80 44 0 8 87 1 80 2.33e-15 72.4
MsaG015562 MtrunA17_Chr4g0061691 31.953 169 91 6 8 172 1 149 2.50e-15 72.0
MsaG015562 MtrunA17_Chr3g0134451 38.835 103 60 2 8 109 1 101 2.80e-15 72.8
MsaG015562 MtrunA17_Chr5g0412461 32.759 174 83 6 8 172 1 149 5.14e-15 70.9
MsaG015562 MtrunA17_Chr5g0411691 44.928 69 38 0 8 76 1 69 5.45e-15 71.2
MsaG015562 MtrunA17_Chr5g0412271 31.609 174 85 6 8 172 1 149 5.60e-15 70.9
MsaG015562 MtrunA17_Chr8g0351041 41.053 95 48 2 10 96 3 97 7.77e-15 69.3
MsaG015562 MtrunA17_Chr2g0284911 44.928 69 38 0 8 76 16 84 1.51e-14 70.1
MsaG015562 MtrunA17_Chr7g0246431 35.849 106 63 2 10 115 3 103 1.67e-14 69.3
MsaG015562 MtrunA17_Chr4g0025531 47.619 84 44 0 1 84 1 84 3.23e-14 68.9
MsaG015562 MtrunA17_Chr8g0351031 41.053 95 48 2 10 96 3 97 5.17e-14 68.2
MsaG015562 MtrunA17_Chr7g0220121 40.541 74 43 1 8 80 1 74 5.79e-14 68.6
MsaG015562 MtrunA17_Chr8g0366231 44.286 70 38 1 8 76 1 70 6.09e-14 68.2
MsaG015562 MtrunA17_Chr1g0173161 46.774 62 33 0 8 69 1 62 9.78e-14 64.3
MsaG015562 MtrunA17_Chr3g0093131 28.571 154 88 5 26 168 36 178 1.06e-13 66.6
MsaG015562 MtrunA17_Chr6g0455511 42.857 70 39 1 8 76 1 70 2.25e-13 67.0
MsaG015562 MtrunA17_Chr5g0420081 29.839 124 78 3 8 126 1 120 3.08e-13 66.2
MsaG015562 MtrunA17_Chr2g0308251 44.286 70 39 0 8 77 1 70 5.78e-13 62.0
MsaG015562 MtrunA17_Chr4g0044071 48.276 58 30 0 8 65 1 58 6.30e-13 62.8
MsaG015562 MtrunA17_Chr1g0164791 45.070 71 37 1 8 76 1 71 6.63e-13 65.5
MsaG015562 MtrunA17_Chr7g0220111 41.429 70 40 1 8 76 1 70 1.22e-12 64.7
MsaG015562 MtrunA17_Chr5g0427921 48.276 58 30 0 8 65 1 58 1.45e-12 60.5
MsaG015562 MtrunA17_Chr5g0420091 41.429 70 40 1 8 76 1 70 1.63e-12 63.9
MsaG015562 MtrunA17_Chr5g0425191 50.943 53 26 0 8 60 1 53 1.67e-12 61.6
MsaG015562 MtrunA17_Chr7g0246381 44.776 67 32 1 8 69 1 67 1.68e-12 60.5
MsaG015562 MtrunA17_Chr5g0404951 43.662 71 38 1 8 76 1 71 1.92e-12 63.9
MsaG015562 MtrunA17_Chr8g0377561 45.614 57 31 0 8 64 1 57 3.66e-12 60.5
MsaG015562 MtrunA17_Chr3g0125241 38.028 71 42 1 8 76 26 96 4.23e-12 62.8
MsaG015562 MtrunA17_Chr4g0061671 43.103 58 33 0 8 65 1 58 5.14e-12 62.0
MsaG015562 MtrunA17_Chr3g0142191 40.845 71 40 1 8 76 1 71 6.17e-12 62.8
MsaG015562 MtrunA17_Chr3g0122251 47.368 57 30 0 8 64 1 57 8.20e-12 62.4
MsaG015562 MtrunA17_Chr4g0018421 34.694 98 58 3 8 99 1 98 9.05e-12 61.6
MsaG015562 MtrunA17_Chr1g0159661 36.620 71 43 1 8 76 1 71 1.26e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015562 AT5G60440.1 53.297 182 80 3 5 183 3 182 6.13e-58 184
MsaG015562 AT2G24840.1 55.975 159 65 2 7 162 61 217 1.74e-55 177
MsaG015562 AT4G36590.1 42.632 190 92 4 5 186 3 183 4.55e-41 140
MsaG015562 AT1G01530.1 37.306 193 109 4 5 196 3 184 1.48e-36 128
MsaG015562 AT1G65360.1 37.306 193 110 4 5 196 3 185 1.80e-32 117
MsaG015562 AT2G34440.1 36.095 169 101 4 8 171 1 167 8.75e-27 101
MsaG015562 AT3G04100.1 32.121 165 108 3 2 162 7 171 1.63e-24 96.3
MsaG015562 AT3G66656.1 41.803 122 63 2 8 123 1 120 1.57e-23 92.8
MsaG015562 AT1G28460.1 34.532 139 88 2 1 137 1 138 2.17e-21 87.4
MsaG015562 AT1G72350.1 36.364 154 65 4 9 162 43 163 3.21e-21 87.8
MsaG015562 AT4G22950.2 40.000 120 61 4 10 124 3 116 4.28e-18 78.6
MsaG015562 AT2G45650.1 33.523 176 87 5 8 156 1 173 6.55e-18 79.7
MsaG015562 AT4G22950.3 40.000 120 61 4 10 124 3 116 1.89e-17 77.8
MsaG015562 AT4G22950.1 40.000 120 61 4 10 124 3 116 1.89e-17 77.8
MsaG015562 AT4G37940.4 47.826 69 36 0 8 76 1 69 3.68e-17 77.0
MsaG015562 AT4G37940.1 47.826 69 36 0 8 76 1 69 3.89e-17 77.0
MsaG015562 AT4G37940.3 47.826 69 36 0 8 76 1 69 4.17e-17 75.9
MsaG015562 AT3G57230.2 44.928 69 38 0 8 76 1 69 4.41e-17 75.1
MsaG015562 AT4G24540.1 32.530 166 95 4 8 173 1 149 1.18e-16 75.9
MsaG015562 AT1G17310.1 34.615 156 66 4 9 164 48 167 1.53e-16 75.5
MsaG015562 AT1G17310.2 34.615 156 66 4 9 164 59 178 1.71e-16 75.5
MsaG015562 AT5G51870.5 49.315 73 37 0 4 76 20 92 1.86e-16 74.7
MsaG015562 AT1G29962.1 35.294 119 73 2 1 116 1 118 2.01e-16 74.3
MsaG015562 AT3G57230.1 44.928 69 38 0 8 76 1 69 2.15e-16 75.5
MsaG015562 AT3G57230.4 44.928 69 38 0 8 76 1 69 2.15e-16 75.5
MsaG015562 AT1G28450.1 30.612 147 95 3 1 141 1 146 2.32e-16 74.3
MsaG015562 AT5G51870.2 52.239 67 32 0 10 76 3 69 3.37e-16 73.6
MsaG015562 AT2G22630.1 47.826 69 36 0 8 76 1 69 3.57e-16 74.7
MsaG015562 AT2G22630.2 47.826 69 36 0 8 76 1 69 3.57e-16 74.7
MsaG015562 AT5G51870.1 52.239 67 32 0 10 76 3 69 5.42e-16 73.6
MsaG015562 AT1G47760.1 41.176 85 48 1 8 92 1 83 5.46e-16 73.2
MsaG015562 AT5G51870.3 50.000 70 35 0 7 76 10 79 7.18e-16 73.6
MsaG015562 AT5G13790.2 40.179 112 64 2 8 118 1 110 8.54e-16 74.3
MsaG015562 AT4G09960.2 44.928 69 38 0 8 76 1 69 8.88e-16 73.2
MsaG015562 AT4G09960.6 44.928 69 38 0 8 76 2 70 9.27e-16 73.6
MsaG015562 AT4G09960.1 44.928 69 38 0 8 76 1 69 9.61e-16 73.6
MsaG015562 AT5G51870.4 52.239 67 32 0 10 76 3 69 1.09e-15 73.2
MsaG015562 AT5G62165.14 39.241 79 48 0 10 88 3 81 1.14e-15 70.5
MsaG015562 AT2G22540.3 36.923 130 74 3 8 129 1 130 1.17e-15 73.2
MsaG015562 AT2G22540.1 36.923 130 74 3 8 129 1 130 1.17e-15 73.2
MsaG015562 AT4G09960.5 44.928 69 38 0 8 76 11 79 1.31e-15 73.2
MsaG015562 AT4G09960.3 40.789 76 45 0 1 76 20 95 1.70e-15 73.2
MsaG015562 AT2G45660.2 45.588 68 37 0 10 77 3 70 1.82e-15 71.2
MsaG015562 AT5G62165.17 39.241 79 48 0 10 88 3 81 2.09e-15 70.9
MsaG015562 AT5G62165.12 39.241 79 48 0 10 88 3 81 2.09e-15 70.9
MsaG015562 AT5G62165.11 39.241 79 48 0 10 88 3 81 2.09e-15 70.9
MsaG015562 AT5G62165.6 39.241 79 48 0 10 88 3 81 2.46e-15 70.5
MsaG015562 AT5G62165.9 39.241 79 48 0 10 88 3 81 2.46e-15 70.5
MsaG015562 AT5G62165.7 39.241 79 48 0 10 88 3 81 2.46e-15 70.5
MsaG015562 AT5G62165.8 39.241 79 48 0 10 88 3 81 2.46e-15 70.5
MsaG015562 AT5G62165.13 39.241 79 48 0 10 88 3 81 2.46e-15 70.5
MsaG015562 AT3G30260.1 47.143 70 36 1 8 76 1 70 2.96e-15 72.4
MsaG015562 AT3G57390.3 36.508 126 69 4 8 124 1 124 3.69e-15 71.6
MsaG015562 AT3G58780.1 43.750 80 40 1 8 82 16 95 4.01e-15 72.0
MsaG015562 AT4G09960.4 44.928 69 38 0 8 76 96 164 4.48e-15 72.8
MsaG015562 AT3G58780.5 43.750 80 40 1 8 82 22 101 4.51e-15 72.0
MsaG015562 AT2G42830.1 42.500 80 41 1 8 82 16 95 4.59e-15 72.0
MsaG015562 AT2G45660.1 45.588 68 37 0 10 77 3 70 4.63e-15 71.2
MsaG015562 AT2G42830.2 42.500 80 41 1 8 82 16 95 4.96e-15 71.6
MsaG015562 AT3G57390.1 36.508 126 69 4 8 124 1 124 5.38e-15 71.6
MsaG015562 AT5G13790.1 47.826 69 36 0 8 76 1 69 5.49e-15 72.0
MsaG015562 AT5G62165.10 39.241 79 48 0 10 88 3 81 5.71e-15 70.9
MsaG015562 AT5G62165.4 39.241 79 48 0 10 88 3 81 5.71e-15 70.9
MsaG015562 AT5G62165.3 39.241 79 48 0 10 88 3 81 6.41e-15 70.9
MsaG015562 AT5G62165.1 39.241 79 48 0 10 88 3 81 6.41e-15 70.9
MsaG015562 AT5G62165.2 39.241 79 48 0 10 88 3 81 6.41e-15 70.9
MsaG015562 AT1G77950.3 42.308 78 43 2 8 84 1 77 6.86e-15 71.6
MsaG015562 AT1G77950.2 42.308 78 43 2 8 84 1 77 6.86e-15 71.6
MsaG015562 AT1G77950.1 42.308 78 43 2 8 84 1 77 6.86e-15 71.6
MsaG015562 AT1G77950.4 42.308 78 43 2 8 84 1 77 6.86e-15 71.6
MsaG015562 AT2G14210.1 45.714 70 37 1 8 76 1 70 1.05e-14 70.5
MsaG015562 AT1G71692.1 46.479 71 37 1 8 77 1 71 1.17e-14 70.1
MsaG015562 AT3G58780.4 43.750 80 40 1 8 82 16 95 1.20e-14 71.2
MsaG015562 AT2G14210.2 45.714 70 37 1 8 76 1 70 1.39e-14 70.5
MsaG015562 AT1G46408.1 49.351 77 35 2 10 82 5 81 1.39e-14 70.9
MsaG015562 AT3G61120.1 44.928 69 38 0 8 76 1 69 1.57e-14 70.5
MsaG015562 AT5G10140.2 45.714 70 37 1 8 76 1 70 2.06e-14 68.6
MsaG015562 AT1G77980.1 44.444 72 39 1 8 78 1 72 2.13e-14 70.9
MsaG015562 AT5G60910.1 42.857 84 45 1 8 91 1 81 2.34e-14 69.7
MsaG015562 AT5G23260.4 46.250 80 41 1 3 80 12 91 2.53e-14 70.1
MsaG015562 AT5G23260.1 46.250 80 41 1 3 80 12 91 2.62e-14 70.1
MsaG015562 AT4G18960.1 45.588 68 37 0 9 76 18 85 2.76e-14 69.7
MsaG015562 AT3G54340.1 31.579 152 80 3 8 157 1 130 3.76e-14 68.9
MsaG015562 AT5G10140.3 45.714 70 37 1 8 76 1 70 4.07e-14 68.2
MsaG015562 AT5G10140.4 45.714 70 37 1 8 76 1 70 4.11e-14 68.2
MsaG015562 AT5G10140.1 45.714 70 37 1 8 76 1 70 4.47e-14 68.2
MsaG015562 AT5G51860.2 47.761 67 35 0 10 76 3 69 4.51e-14 68.6
MsaG015562 AT1G22130.1 43.210 81 44 2 8 87 1 80 5.13e-14 70.1
MsaG015562 AT5G51860.1 47.761 67 35 0 10 76 3 69 6.00e-14 68.2
MsaG015562 AT1G69120.2 45.714 70 37 1 8 76 1 70 6.55e-14 68.6
MsaG015562 AT4G37435.1 33.333 174 96 7 8 168 1 167 7.03e-14 67.4
MsaG015562 AT4G11880.2 37.190 121 64 5 10 124 3 117 8.09e-14 67.4
MsaG015562 AT4G11880.3 37.190 121 64 5 10 124 3 117 8.09e-14 67.4
MsaG015562 AT1G26310.1 33.871 124 71 5 8 124 1 120 9.75e-14 68.2
MsaG015562 AT1G69120.1 45.714 70 37 1 8 76 1 70 1.25e-13 68.2
MsaG015562 AT2G22540.2 36.154 130 70 4 8 129 1 125 1.88e-13 67.4
MsaG015562 AT5G65050.2 47.143 70 36 1 8 76 1 70 2.37e-13 65.9
MsaG015562 AT5G49490.1 39.326 89 48 2 10 92 46 134 2.57e-13 67.4
MsaG015562 AT4G11880.4 37.190 121 64 5 10 124 3 117 3.50e-13 66.2
MsaG015562 AT4G11880.1 37.190 121 64 5 10 124 3 117 3.50e-13 66.2
MsaG015562 AT5G23260.2 46.667 75 38 1 8 80 1 75 4.59e-13 66.2
MsaG015562 AT5G65050.3 47.143 70 36 1 8 76 1 70 5.21e-13 65.5
MsaG015562 AT5G23260.3 46.667 75 38 1 8 80 1 75 5.67e-13 65.9
MsaG015562 AT5G65050.1 42.222 90 50 2 8 96 1 89 5.78e-13 65.1
MsaG015562 AT5G65050.5 47.143 70 36 1 8 76 1 70 6.40e-13 65.1
MsaG015562 AT5G38620.1 41.558 77 41 1 10 82 6 82 6.95e-13 66.6
MsaG015562 AT5G49420.1 41.558 77 41 1 10 82 8 84 6.98e-13 66.6
MsaG015562 AT5G65060.3 47.143 70 36 1 8 76 1 70 1.10e-12 64.3
MsaG015562 AT5G65060.1 47.143 70 36 1 8 76 1 70 1.33e-12 64.3
MsaG015562 AT5G65060.2 47.143 70 36 1 8 76 1 70 1.41e-12 63.9
MsaG015562 AT2G03710.3 49.123 57 29 0 8 64 1 57 2.40e-12 63.5
MsaG015562 AT3G58780.2 41.333 75 42 1 8 82 16 88 2.61e-12 64.3
MsaG015562 AT5G15800.1 41.429 70 40 1 8 76 1 70 3.14e-12 63.9
MsaG015562 AT3G58780.3 47.458 59 31 0 8 66 16 74 3.88e-12 63.9
MsaG015562 AT1G18750.3 36.471 85 51 2 8 90 1 84 4.26e-12 64.7
MsaG015562 AT5G65070.4 40.000 70 41 1 8 76 1 70 4.38e-12 62.0
MsaG015562 AT5G15800.2 41.429 70 40 1 8 76 1 70 4.94e-12 63.5
MsaG015562 AT5G04640.1 43.038 79 41 2 10 84 5 83 5.24e-12 63.9
MsaG015562 AT1G18750.4 36.471 85 51 2 8 90 1 84 5.34e-12 64.3
MsaG015562 AT1G18750.1 36.471 85 51 2 8 90 1 84 6.04e-12 64.3
MsaG015562 AT2G03710.1 43.662 71 38 2 8 76 1 71 7.01e-12 63.2
MsaG015562 AT2G03710.2 43.662 71 38 2 8 76 1 71 7.37e-12 63.2
MsaG015562 AT5G20240.2 38.028 71 42 1 8 76 1 71 9.36e-12 60.8
MsaG015562 AT3G02310.2 45.614 57 31 0 8 64 1 57 1.15e-11 61.6
MsaG015562 AT5G65070.1 40.000 70 41 1 8 76 1 70 1.18e-11 61.6
MsaG015562 AT5G20240.1 38.028 71 42 1 8 76 1 71 1.47e-11 61.6
MsaG015562 AT1G24260.1 45.614 57 31 0 8 64 1 57 1.91e-11 62.0
MsaG015562 AT1G24260.2 45.614 57 31 0 8 64 1 57 1.99e-11 62.0
MsaG015562 AT1G24260.3 45.614 57 31 0 8 64 1 57 2.07e-11 61.6
MsaG015562 AT5G65080.3 38.961 77 46 1 1 76 1 77 2.32e-11 60.8
MsaG015562 AT5G65070.2 40.000 70 41 1 8 76 1 70 2.51e-11 61.2
MsaG015562 AT3G02310.1 45.614 57 31 0 8 64 1 57 2.75e-11 61.6
MsaG015562 AT5G65070.5 40.000 70 41 1 8 76 1 70 3.97e-11 60.5
MsaG015562 AT5G65080.2 41.935 62 36 0 1 62 1 62 6.56e-11 59.7

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGAATTGCTCCAATTAA+AGG 0.119085 3:-88367819 MsaT015562.1:CDS
CAGGGCTTTCCCACCAAAAT+TGG 0.148155 3:+88367858 None:intergenic
CCTCAATAGAAACCTTTAAT+TGG 0.230669 3:+88367807 None:intergenic
GCCAAATGAAAAGGCCTTAT+TGG 0.240870 3:+88368081 None:intergenic
TCTTCAAATATTGGAGCTAA+TGG 0.264087 3:-88367722 MsaT015562.1:CDS
AAGCTAGGCAAATCCAATTT+TGG 0.264504 3:-88367871 MsaT015562.1:CDS
AATGTTTCTTCTTCAAATAT+TGG 0.290840 3:-88367731 MsaT015562.1:CDS
AAACCAAGATAATAGCTATT+AGG 0.328747 3:+88367662 None:intergenic
GCGAGCTTTGTACTCTTTGT+GGG 0.351326 3:-88368135 MsaT015562.1:CDS
TTCAAGCCAAGTTCATCAAC+AGG 0.363427 3:+88367839 None:intergenic
CTTCCTAATAGCTATTATCT+TGG 0.392270 3:-88367665 MsaT015562.1:CDS
TCAATGATAGACTCAACTTC+TGG 0.393804 3:+88368055 None:intergenic
AGCGAGCTTTGTACTCTTTG+TGG 0.399076 3:-88368136 MsaT015562.1:CDS
CCAATTAAAGGTTTCTATTG+AGG 0.402441 3:-88367807 MsaT015562.1:CDS
TTCTGGATGGCCAAATGAAA+AGG 0.462388 3:+88368072 None:intergenic
GAGGACCTCAGGAAGAATCT+TGG 0.482352 3:-88367788 MsaT015562.1:CDS
AATATTTGAAGAAGAAACAT+TGG 0.484454 3:+88367733 None:intergenic
GAAAGCCCTGTTGATGAACT+TGG 0.488472 3:-88367845 MsaT015562.1:CDS
AGGTTTCTATTGAGGACCTC+AGG 0.504170 3:-88367799 MsaT015562.1:CDS
CACATTGAGATCGCGGACAT+TGG 0.511795 3:+88367964 None:intergenic
TTCTATGAGCCTCAACAAGT+TGG 0.515367 3:+88367990 None:intergenic
AGATAATAGCTATTAGGAAG+TGG 0.515794 3:+88367668 None:intergenic
AATGAAAAGGCCTTATTGGC+CGG 0.531850 3:+88368085 None:intergenic
GATAATAGCTATTAGGAAGT+GGG 0.532917 3:+88367669 None:intergenic
GCTTCTTCTCAATCTCAAGA+TGG 0.540170 3:+88367921 None:intergenic
AATTGCTAGCAAATGCATGA+TGG 0.549591 3:-88367762 MsaT015562.1:CDS
GCTTTGTACTCTTTGTGGGG+TGG 0.554210 3:-88368131 MsaT015562.1:CDS
TTGAGATTGAGAAGAAGCAA+GGG 0.559206 3:-88367916 MsaT015562.1:CDS
TAGATCATGTGAGAAAAGCT+AGG 0.577921 3:-88367886 MsaT015562.1:CDS
TGGTGAGAACTAGACTCTTG+TGG 0.583837 3:+88368010 None:intergenic
TAGTTCTCACCAACTTGTTG+AGG 0.589387 3:-88367999 MsaT015562.1:CDS
CGAGCTTTGTACTCTTTGTG+GGG 0.591598 3:-88368134 MsaT015562.1:CDS
CTTGAGATTGAGAAGAAGCA+AGG 0.611768 3:-88367917 MsaT015562.1:CDS
TGATAGACTCAACTTCTGGA+TGG 0.619728 3:+88368059 None:intergenic
ATAATAGCTATTAGGAAGTG+GGG 0.630969 3:+88367670 None:intergenic
TTAGTTGCACATTGAGATCG+CGG 0.641507 3:+88367957 None:intergenic
TCAAGCCAAGTTCATCAACA+GGG 0.666202 3:+88367840 None:intergenic
TGAGATTGAGAAGAAGCAAG+GGG 0.668695 3:-88367915 MsaT015562.1:CDS
TGAGAACTAGACTCTTGTGG+AGG 0.704318 3:+88368013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 88367652 88368275 88367652 ID=MsaG015562
Chr3 mRNA 88367652 88368275 88367652 ID=MsaT015562.1;Parent=MsaG015562
Chr3 exon 88367652 88368275 88367652 ID=MsaT015562.1.exon1;Parent=MsaT015562.1
Chr3 CDS 88367652 88368275 88367652 ID=cds.MsaT015562.1;Parent=MsaT015562.1
Gene Sequence

>MsaT015562.1

ATGTCAAAGAAAAAGACTAGTTTAGGTCGTCAAAAAATCCCTATTGAGAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGTCGTTCCGGACTTTTCAAAAAGGCTAGCGAGCTTTGTACTCTTTGTGGGGTGGAAATTGCAATTGTTGTTTTCTCTCCGGCCAATAAGGCCTTTTCATTTGGCCATCCAGAAGTTGAGTCTATCATTGATCGTTATCTTAGTCGAAATCCTCCACAAGAGTCTAGTTCTCACCAACTTGTTGAGGCTCATAGAAATGCCAATGTCCGCGATCTCAATGTGCAACTAACTCAACTTCTTAGCCATCTTGAGATTGAGAAGAAGCAAGGGGAAGAGATAGATCATGTGAGAAAAGCTAGGCAAATCCAATTTTGGTGGGAAAGCCCTGTTGATGAACTTGGCTTGAATGAATTGCTCCAATTAAAGGTTTCTATTGAGGACCTCAGGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCCAATGTTTCTTCTTCAAATATTGGAGCTAATGGATTTTTAGGTGTAGGGATTAATATTGCTTCCCCACTTCCTAATAGCTATTATCTTGGTTTTCGAATTTGA

Protein sequence

>MsaT015562.1

MSKKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDHVRKARQIQFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSNVSSSNIGANGFLGVGINIASPLPNSYYLGFRI*