AlfalfaGEDB | MsaG015576

M. sativa ssp. caerulea / MsaG015576

KEGG: -
GO: -
PFAM: PF09425.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015576	XP_024633849.1	86.885	122	7	2	1	113	1	122	2.08e-65	203

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015576	tr\|A0A396IWL4\|A0A396IWL4_MEDTR	86.885	122	7	2	1	113	1	122	9.93e-66	203

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015576	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015576	MtrunA17_Chr3g0120121	86.885	122	7	2	1	113	1	122	1.91e-69	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCTGTGGTGTCCATTGCG+AGG	0.627615	3:+88585289	None:intergenic
ACACCACAGATTTGACGAAA+AGG	0.545745	3:-88585278	MsaT015576.1:CDS
ATGCACTAGGTTGCATTGAA+AGG	0.491779	3:+88584865	None:intergenic
ATGGTTGGCAAGTCAAGAAA+TGG	0.426643	3:-88584931	MsaT015576.1:CDS
CAAGAAATGGAAGGAAAGAA+TGG	0.466725	3:-88584918	MsaT015576.1:CDS
CTTGTTGCAAATCCTCGCAA+TGG	0.611244	3:-88585301	MsaT015576.1:CDS
CTTTATGGAAAAGCCATGTG+AGG	0.679093	3:+88584830	None:intergenic
GATGAAACGAAATTGTTGTT+TGG	0.350812	3:-88585469	MsaT015576.1:CDS
GCATGCATTTGTAATGCACT+AGG	0.632578	3:+88584852	None:intergenic
GGCTAGAGCGATAATATGGT+TGG	0.554001	3:-88584946	MsaT015576.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	88584752	88585490	88584752	ID=MsaG015576
Chr3	mRNA	88584752	88585490	88584752	ID=MsaT015576.1;Parent=MsaG015576
Chr3	exon	88584752	88584967	88584752	ID=MsaT015576.1.exon3;Parent=MsaT015576.1
Chr3	CDS	88584752	88584967	88584752	ID=cds.MsaT015576.1;Parent=MsaT015576.1
Chr3	exon	88585270	88585351	88585270	ID=MsaT015576.1.exon2;Parent=MsaT015576.1
Chr3	CDS	88585270	88585351	88585270	ID=cds.MsaT015576.1;Parent=MsaT015576.1
Chr3	exon	88585447	88585490	88585447	ID=MsaT015576.1.exon1;Parent=MsaT015576.1
Chr3	CDS	88585447	88585490	88585447	ID=cds.MsaT015576.1;Parent=MsaT015576.1

Gene Sequence	>MsaT015576.1 ATGAAACGAAATTGTTGTTTGGATTCATCATCTCGTAAATCAATGAATGAGAAGTTGAACGTAAACAAGAAACTTGTTGCAAATCCTCGCAATGGACACCACAGATTTGACGAAAAGGAGCTTCAAGCTAGAGCGATAATATGGTTGGCAAGTCAAGAAATGGAAGGAAAGAATGGTAGCAACAAAGAATCAATTCCAACACTATCCCTTTCAATGCAACCTAGTGCATTACAAATGCATGCCTCACATGGCTTTTCCATAAAGCGATCACTTCAAAATTTCCTTGAGAAGAGAAAGAAAAGGATTCAAAATGATAATGATAATAATAGTAGTACAAATTAG
Protein sequence	>MsaT015576.1 MKRNCCLDSSSRKSMNEKLNVNKKLVANPRNGHHRFDEKELQARAIIWLASQEMEGKNGSNKESIPTLSLSMQPSALQMHASHGFSIKRSLQNFLEKRKKRIQNDNDNNSSTN*