Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG015585 | XP_013461146.1 | 87.838 | 74 | 9 | 0 | 16 | 89 | 114 | 187 | 9.06e-35 | 140 |
| MsaG015585 | XP_013461146.1 | 92.135 | 178 | 14 | 0 | 156 | 333 | 6 | 183 | 1.30e-113 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG015585 | sp|Q75LL6|TADA2_ORYSJ | 68.217 | 129 | 41 | 0 | 199 | 327 | 53 | 181 | 4.48e-58 | 206 |
| MsaG015585 | sp|Q75LL6|TADA2_ORYSJ | 38.009 | 221 | 114 | 2 | 347 | 544 | 321 | 541 | 6.30e-36 | 145 |
| MsaG015585 | sp|Q75LL6|TADA2_ORYSJ | 57.143 | 70 | 30 | 0 | 10 | 79 | 112 | 181 | 5.91e-19 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG015585 | tr|A0A072VAF9|A0A072VAF9_MEDTR | 87.838 | 74 | 9 | 0 | 16 | 89 | 114 | 187 | 4.33e-35 | 140 |
| MsaG015585 | tr|A0A072VAF9|A0A072VAF9_MEDTR | 92.135 | 178 | 14 | 0 | 156 | 333 | 6 | 183 | 6.20e-114 | 346 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG015585 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG015608 | MsaG015585 | 0.919953 | 6.035548e-87 | 1.133579e-82 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG015585 | MtrunA17_Chr3g0120221 | 92.135 | 178 | 14 | 0 | 156 | 333 | 6 | 183 | 1.19e-117 | 346 |
| MsaG015585 | MtrunA17_Chr3g0120221 | 87.838 | 74 | 9 | 0 | 16 | 89 | 114 | 187 | 8.33e-39 | 140 |
| MsaG015585 | MtrunA17_Chr3g0120231 | 79.793 | 193 | 38 | 1 | 358 | 550 | 2 | 193 | 1.15e-104 | 313 |
| MsaG015585 | MtrunA17_Chr2g0290321 | 71.078 | 204 | 59 | 0 | 347 | 550 | 332 | 535 | 1.08e-93 | 297 |
| MsaG015585 | MtrunA17_Chr2g0290321 | 55.357 | 168 | 72 | 2 | 166 | 332 | 19 | 184 | 6.34e-55 | 194 |
| MsaG015585 | MtrunA17_Chr2g0290321 | 51.190 | 84 | 40 | 1 | 16 | 98 | 115 | 198 | 3.45e-17 | 84.7 |
| MsaG015585 | MtrunA17_Chr2g0290341 | 65.939 | 229 | 70 | 2 | 322 | 550 | 270 | 490 | 2.66e-92 | 292 |
| MsaG015585 | MtrunA17_Chr2g0290341 | 61.429 | 140 | 52 | 1 | 189 | 328 | 26 | 163 | 1.96e-53 | 189 |
| MsaG015585 | MtrunA17_Chr2g0290341 | 45.000 | 100 | 54 | 1 | 10 | 108 | 93 | 192 | 7.89e-18 | 86.7 |
| MsaG015585 | MtrunA17_Chr3g0120841 | 67.368 | 190 | 56 | 4 | 166 | 353 | 21 | 206 | 8.84e-74 | 245 |
| MsaG015585 | MtrunA17_Chr3g0120841 | 37.615 | 218 | 116 | 5 | 347 | 544 | 326 | 543 | 4.50e-33 | 133 |
| MsaG015585 | MtrunA17_Chr3g0120841 | 70.769 | 65 | 19 | 0 | 22 | 86 | 125 | 189 | 9.85e-25 | 108 |
| MsaG015585 | MtrunA17_Chr7g0239471 | 63.235 | 204 | 62 | 2 | 347 | 550 | 281 | 471 | 1.04e-73 | 243 |
| MsaG015585 | MtrunA17_Chr7g0239471 | 59.877 | 162 | 63 | 1 | 166 | 327 | 18 | 177 | 2.99e-54 | 191 |
| MsaG015585 | MtrunA17_Chr7g0239471 | 43.478 | 138 | 50 | 3 | 23 | 132 | 121 | 258 | 4.85e-21 | 96.7 |
| MsaG015585 | MtrunA17_Chr3g0120201 | 39.706 | 204 | 108 | 4 | 347 | 544 | 50 | 244 | 2.03e-37 | 139 |
| MsaG015585 | MtrunA17_Chr3g0120191 | 61.468 | 109 | 38 | 1 | 257 | 365 | 11 | 115 | 4.82e-37 | 133 |
| MsaG015585 | MtrunA17_Chr3g0120191 | 77.465 | 71 | 16 | 0 | 15 | 85 | 17 | 87 | 9.78e-32 | 119 |
| MsaG015585 | MtrunA17_Chr3g0120181 | 73.770 | 61 | 14 | 1 | 185 | 245 | 1 | 59 | 1.23e-25 | 99.8 |
| MsaG015585 | MtrunA17_Chr7g0238851 | 51.899 | 79 | 36 | 1 | 167 | 245 | 5 | 81 | 6.49e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG015585 | AT4G16420.1 | 49.254 | 201 | 97 | 2 | 166 | 366 | 18 | 213 | 7.11e-59 | 204 |
| MsaG015585 | AT4G16420.1 | 44.279 | 201 | 99 | 3 | 347 | 544 | 276 | 466 | 5.17e-44 | 163 |
| MsaG015585 | AT4G16420.1 | 48.421 | 95 | 47 | 1 | 12 | 104 | 108 | 202 | 5.72e-19 | 90.5 |
| MsaG015585 | AT4G16420.2 | 55.828 | 163 | 68 | 1 | 166 | 328 | 18 | 176 | 1.94e-58 | 202 |
| MsaG015585 | AT4G16420.2 | 44.279 | 201 | 99 | 3 | 347 | 544 | 272 | 462 | 4.92e-44 | 163 |
| MsaG015585 | AT4G16420.2 | 48.421 | 95 | 47 | 1 | 12 | 104 | 108 | 202 | 6.25e-19 | 90.5 |
| MsaG015585 | AT4G16420.3 | 55.828 | 163 | 68 | 1 | 166 | 328 | 18 | 176 | 1.97e-58 | 202 |
| MsaG015585 | AT4G16420.3 | 44.279 | 201 | 99 | 3 | 347 | 544 | 275 | 465 | 5.18e-44 | 163 |
| MsaG015585 | AT4G16420.3 | 40.769 | 130 | 53 | 2 | 12 | 118 | 108 | 236 | 7.25e-19 | 90.1 |
| MsaG015585 | AT3G07740.1 | 52.717 | 184 | 78 | 5 | 152 | 335 | 15 | 189 | 1.05e-51 | 186 |
| MsaG015585 | AT3G07740.1 | 32.719 | 217 | 119 | 3 | 347 | 544 | 318 | 526 | 6.98e-24 | 105 |
| MsaG015585 | AT3G07740.1 | 53.750 | 80 | 37 | 0 | 10 | 89 | 112 | 191 | 5.64e-19 | 90.9 |
| MsaG015585 | AT3G07740.3 | 59.854 | 137 | 55 | 0 | 199 | 335 | 32 | 168 | 6.69e-51 | 183 |
| MsaG015585 | AT3G07740.3 | 32.719 | 217 | 119 | 3 | 347 | 544 | 297 | 505 | 8.36e-24 | 105 |
| MsaG015585 | AT3G07740.3 | 53.750 | 80 | 37 | 0 | 10 | 89 | 91 | 170 | 4.84e-19 | 90.9 |
| MsaG015585 | AT3G07740.4 | 50.785 | 191 | 78 | 6 | 152 | 335 | 15 | 196 | 3.49e-49 | 179 |
| MsaG015585 | AT3G07740.4 | 32.719 | 217 | 119 | 3 | 347 | 544 | 325 | 533 | 7.69e-24 | 105 |
| MsaG015585 | AT3G07740.4 | 53.750 | 80 | 37 | 0 | 10 | 89 | 119 | 198 | 5.52e-19 | 90.9 |
| MsaG015585 | AT3G07740.2 | 59.829 | 117 | 47 | 0 | 219 | 335 | 2 | 118 | 1.39e-41 | 156 |
| MsaG015585 | AT3G07740.2 | 32.719 | 217 | 119 | 3 | 347 | 544 | 247 | 455 | 6.40e-24 | 105 |
| MsaG015585 | AT3G07740.2 | 53.750 | 80 | 37 | 0 | 10 | 89 | 41 | 120 | 3.04e-19 | 91.3 |
Find 126 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCAAAATTGATATTTC+AGG | 0.197023 | 3:+88727155 | MsaT015585.1:CDS |
| GCATTAACACGTCATATTTC+TGG | 0.203523 | 3:-88739117 | None:intergenic |
| TTATCTTCCCCAGATAATTT+AGG | 0.243807 | 3:-88721875 | None:intergenic |
| GAAAAGAAACCTAAATTATC+TGG | 0.246092 | 3:+88721866 | MsaT015585.1:CDS |
| TTCGGAACCCCGTGATTGTT+TGG | 0.263437 | 3:-88739443 | None:intergenic |
| TCATCAAATGTTCAAGAATA+TGG | 0.282757 | 3:+88739778 | MsaT015585.1:CDS |
| AAATCCTTCTGAAATGGATT+TGG | 0.285314 | 3:-88739070 | None:intergenic |
| TGAAAATGCATTAACAAATA+AGG | 0.295574 | 3:+88717373 | MsaT015585.1:CDS |
| GAAAAGAATTCAAGAGCTTA+AGG | 0.316813 | 3:+88739204 | MsaT015585.1:CDS |
| TTTCATACCATAACCCGATA+TGG | 0.348409 | 3:-88727275 | None:intergenic |
| ACATGTATGGATTTGAGAAT+TGG | 0.349491 | 3:+88717653 | MsaT015585.1:CDS |
| ACATGTATGGATTTGAGAAT+TGG | 0.349491 | 3:+88727887 | MsaT015585.1:CDS |
| GGTGTTAAATCCTTCTGAAA+TGG | 0.358205 | 3:-88739076 | None:intergenic |
| TCGGAACCCCGTGATTGTTT+GGG | 0.363297 | 3:-88739442 | None:intergenic |
| AACATTTGTGCTGCAAGTTA+AGG | 0.370423 | 3:+88739672 | MsaT015585.1:CDS |
| CGGAGAAAGACTTAGCATTC+AGG | 0.390902 | 3:+88724618 | MsaT015585.1:CDS |
| ATAAAAGCAATCATCCATAT+CGG | 0.394474 | 3:+88727261 | MsaT015585.1:CDS |
| TCTTCATGCGCACTCCAATC+TGG | 0.395273 | 3:-88727722 | None:intergenic |
| TGTAGCTGGCCCTGCAGGTC+TGG | 0.404849 | 3:-88739495 | None:intergenic |
| CCGCAGGAAGCAATTGTTGT+TGG | 0.406880 | 3:+88739320 | MsaT015585.1:intron |
| TTATAGTGGTCAATACATTC+AGG | 0.410127 | 3:-88717712 | None:intergenic |
| TTATAGTGGTCAATACATTC+AGG | 0.410127 | 3:-88727946 | None:intergenic |
| CTCTTGCATCTTCAGATACA+TGG | 0.413622 | 3:-88739705 | None:intergenic |
| GGATTTAACACCCGAGGAAA+AGG | 0.418496 | 3:+88739087 | MsaT015585.1:CDS |
| CCTCTCAACACTTCCATAGA+TGG | 0.419056 | 3:-88721899 | None:intergenic |
| TGGGGAAGATAAGCCATCTA+TGG | 0.420127 | 3:+88721886 | MsaT015585.1:CDS |
| GTTAATGCGCTTTCATACTA+AGG | 0.422076 | 3:+88739132 | MsaT015585.1:CDS |
| GGCAAATAGTGTATTGTGAT+TGG | 0.423715 | 3:-88729661 | None:intergenic |
| CAATCATCCATATCGGGTTA+TGG | 0.423979 | 3:+88727268 | MsaT015585.1:CDS |
| AAGCTGAAGGAAGTGCTCGC+TGG | 0.429923 | 3:+88739396 | MsaT015585.1:CDS |
| AGATGAAGCACATATATATC+TGG | 0.433992 | 3:+88739355 | MsaT015585.1:CDS |
| ACACTATTTGCCACAATTCA+AGG | 0.434350 | 3:+88729672 | MsaT015585.1:CDS |
| ACTGCAAAATTGATATTTCA+GGG | 0.454131 | 3:+88727156 | MsaT015585.1:CDS |
| GGTCTGGTACCAGCAGAGTC+TGG | 0.454618 | 3:-88739479 | None:intergenic |
| AGCTGAAGGAAGTGCTCGCT+GGG | 0.457235 | 3:+88739397 | MsaT015585.1:CDS |
| CTTGATGTAGCTGGCCCTGC+AGG | 0.464096 | 3:-88739500 | None:intergenic |
| TTCCGCTTACATGTCCAGAT+TGG | 0.474697 | 3:+88727708 | MsaT015585.1:CDS |
| TCTCAAGCAGGTTGGAGCAC+TGG | 0.475857 | 3:+88721842 | MsaT015585.1:CDS |
| AAAAGAAACCTAAATTATCT+GGG | 0.477686 | 3:+88721867 | MsaT015585.1:CDS |
| GAGTTGATCTCCCTTTCCCA+TGG | 0.497705 | 3:-88717898 | None:intergenic |
| GAGTTGATCTCCCTTTCCCA+TGG | 0.497705 | 3:-88728132 | None:intergenic |
| GTATGATATGCTCATTAAGA+AGG | 0.500449 | 3:+88739825 | MsaT015585.1:CDS |
| CCCACTACGTACCACACCAC+TGG | 0.507496 | 3:-88724649 | None:intergenic |
| GATATCATGAGAAAATTGAC+AGG | 0.509371 | 3:+88739800 | MsaT015585.1:CDS |
| TCTGCTGGTACCAGACCTGC+AGG | 0.510347 | 3:+88739485 | MsaT015585.1:CDS |
| GAACTCCGTGCCATGGGAAA+GGG | 0.510817 | 3:+88717888 | MsaT015585.1:CDS |
| GAACTCCGTGCCATGGGAAA+GGG | 0.510817 | 3:+88728122 | MsaT015585.1:CDS |
| TTGACAACACTTGATGTAGC+TGG | 0.512573 | 3:-88739509 | None:intergenic |
| TCAAGTGTTGTCAAAGCAGC+AGG | 0.512952 | 3:+88739518 | MsaT015585.1:CDS |
| GGCAAGAGAAAGTACTCATA+TGG | 0.514581 | 3:+88739418 | MsaT015585.1:CDS |
| TCTGGAGACATCAATGCATT+CGG | 0.516271 | 3:-88739461 | None:intergenic |
| TAAAAGCAATCATCCATATC+GGG | 0.518323 | 3:+88727262 | MsaT015585.1:CDS |
| TCTCAAATCCATACATGTCA+AGG | 0.519033 | 3:-88717648 | None:intergenic |
| TCTCAAATCCATACATGTCA+AGG | 0.519033 | 3:-88727882 | None:intergenic |
| TGAAGAGAGGTTACTTCTTG+AGG | 0.519406 | 3:+88727739 | MsaT015585.1:CDS |
| ATATGGTCCCAAACAATCAC+GGG | 0.524990 | 3:+88739435 | MsaT015585.1:CDS |
| TCAAATAGACTTACAGGAAG+AGG | 0.528922 | 3:-88717763 | None:intergenic |
| TCAAATAGACTTACAGGAAG+AGG | 0.528922 | 3:-88727997 | None:intergenic |
| GGAACTCCGTGCCATGGGAA+AGG | 0.529053 | 3:+88717887 | MsaT015585.1:CDS |
| GGAACTCCGTGCCATGGGAA+AGG | 0.529053 | 3:+88728121 | MsaT015585.1:CDS |
| AGGCGAGCCGCCCAGTGGTG+TGG | 0.532695 | 3:+88724638 | MsaT015585.1:CDS |
| CAAAGAGGAACTCCGTGCCA+TGG | 0.534697 | 3:+88717881 | MsaT015585.1:CDS |
| CAAAGAGGAACTCCGTGCCA+TGG | 0.534697 | 3:+88728115 | MsaT015585.1:CDS |
| AATGGTGTTGCTGAACATGT+TGG | 0.537081 | 3:+88717676 | MsaT015585.1:CDS |
| AATGGTGTTGCTGAACATGT+TGG | 0.537081 | 3:+88727910 | MsaT015585.1:CDS |
| ATGGTGTTGCTGAACATGTT+GGG | 0.537981 | 3:+88717677 | MsaT015585.1:CDS |
| ATGGTGTTGCTGAACATGTT+GGG | 0.537981 | 3:+88727911 | MsaT015585.1:CDS |
| AGTCACACCTCCTTGAATTG+TGG | 0.542407 | 3:-88729682 | None:intergenic |
| AAGAGAAGAAATGAAGCTGA+AGG | 0.545604 | 3:+88739383 | MsaT015585.1:CDS |
| CCACTACGTACCACACCACT+GGG | 0.549438 | 3:-88724648 | None:intergenic |
| CAAAATTGATATTTCAGGGA+AGG | 0.550461 | 3:+88727160 | MsaT015585.1:CDS |
| GATCTCCCTTTCCCATGGCA+CGG | 0.560127 | 3:-88717893 | None:intergenic |
| GATCTCCCTTTCCCATGGCA+CGG | 0.560127 | 3:-88728127 | None:intergenic |
| AAAGAGGAACTCCGTGCCAT+GGG | 0.560848 | 3:+88717882 | MsaT015585.1:CDS |
| AAAGAGGAACTCCGTGCCAT+GGG | 0.560848 | 3:+88728116 | MsaT015585.1:CDS |
| TTGATGTCTCCAGACTCTGC+TGG | 0.561285 | 3:+88739470 | MsaT015585.1:CDS |
| AAGGGAGATCAACTCAAGAA+AGG | 0.572505 | 3:+88717906 | MsaT015585.1:CDS |
| AAGGGAGATCAACTCAAGAA+AGG | 0.572505 | 3:+88728140 | MsaT015585.1:CDS |
| TCGTTAGTAGAATCTCAAGC+AGG | 0.576918 | 3:+88721830 | MsaT015585.1:intron |
| GTAGGATTTGTCTTATTGCG+AGG | 0.577492 | 3:+88717851 | MsaT015585.1:intron |
| GTAGGATTTGTCTTATTGCG+AGG | 0.577492 | 3:+88728085 | MsaT015585.1:intron |
| TAGGATTTGTCTTATTGCGA+GGG | 0.578285 | 3:+88717852 | MsaT015585.1:intron |
| TAGGATTTGTCTTATTGCGA+GGG | 0.578285 | 3:+88728086 | MsaT015585.1:intron |
| CATATGGTCCCAAACAATCA+CGG | 0.582945 | 3:+88739434 | MsaT015585.1:CDS |
| CGATAACATCGAGTTGGCAG+CGG | 0.582961 | 3:+88724598 | MsaT015585.1:CDS |
| TCAGATATACCACATTATAG+TGG | 0.585833 | 3:-88717726 | None:intergenic |
| TCAGATATACCACATTATAG+TGG | 0.585833 | 3:-88727960 | None:intergenic |
| AAGGCTGTTAATAATGCTGA+GGG | 0.591116 | 3:+88726949 | MsaT015585.1:CDS |
| CATGGAAGTCACTGATGGCA+AGG | 0.592151 | 3:+88727106 | MsaT015585.1:CDS |
| ATATCCAAATCCATTTCAGA+AGG | 0.594111 | 3:+88739066 | MsaT015585.1:CDS |
| AAAGGCTGTTAATAATGCTG+AGG | 0.597321 | 3:+88726948 | MsaT015585.1:CDS |
| TGCATCTTCAGATACATGGA+TGG | 0.597743 | 3:-88739701 | None:intergenic |
| TATGGATTTGAGAATTGGAA+TGG | 0.599113 | 3:+88717658 | MsaT015585.1:CDS |
| TATGGATTTGAGAATTGGAA+TGG | 0.599113 | 3:+88727892 | MsaT015585.1:CDS |
| TATGATATGCTCATTAAGAA+GGG | 0.601699 | 3:+88739826 | MsaT015585.1:CDS |
| CTCAAATCCATACATGTCAA+GGG | 0.602788 | 3:-88717647 | None:intergenic |
| CTCAAATCCATACATGTCAA+GGG | 0.602788 | 3:-88727881 | None:intergenic |
| CATCTATGGAAGTGTTGAGA+GGG | 0.606635 | 3:+88721900 | MsaT015585.1:CDS |
| AGGCGACGATAACATCGAGT+TGG | 0.607621 | 3:+88724592 | MsaT015585.1:intron |
| CATTCAGGCGAGCCGCCCAG+TGG | 0.607788 | 3:+88724633 | MsaT015585.1:CDS |
| CCATCTATGGAAGTGTTGAG+AGG | 0.611376 | 3:+88721899 | MsaT015585.1:CDS |
| TAGTAGAATCTCAAGCAGGT+TGG | 0.614970 | 3:+88721834 | MsaT015585.1:intron |
| ATTGGAGTGCGCATGAAGAG+AGG | 0.617745 | 3:+88727726 | MsaT015585.1:CDS |
| TCAGAAGGATTTAACACCCG+AGG | 0.635433 | 3:+88739081 | MsaT015585.1:CDS |
| CTTACAGGAAGAGGAGCACA+TGG | 0.648202 | 3:-88717754 | None:intergenic |
| CTTACAGGAAGAGGAGCACA+TGG | 0.648202 | 3:-88727988 | None:intergenic |
| CATGTATCTGAAGATGCAAG+AGG | 0.648696 | 3:+88739706 | MsaT015585.1:CDS |
| CTCCAATCTGGACATGTAAG+CGG | 0.649769 | 3:-88727710 | None:intergenic |
| GAAGATGCAAGAGGACATGT+CGG | 0.666296 | 3:+88739715 | MsaT015585.1:CDS |
| AAAGAAACCTAAATTATCTG+GGG | 0.670872 | 3:+88721868 | MsaT015585.1:CDS |
| TAGAGCAGAATTGATACATG+AGG | 0.674226 | 3:+88717397 | MsaT015585.1:CDS |
| TTGCGAGGGGAAGAACAAAG+AGG | 0.681299 | 3:+88717866 | MsaT015585.1:CDS |
| TTGCGAGGGGAAGAACAAAG+AGG | 0.681299 | 3:+88728100 | MsaT015585.1:CDS |
| AGAGGGTACAATTCTAACAG+AGG | 0.689534 | 3:+88721917 | MsaT015585.1:CDS |
| CTGCTGGTACCAGACCTGCA+GGG | 0.690842 | 3:+88739486 | MsaT015585.1:CDS |
| GTAGGCATGGAAGTCACTGA+TGG | 0.694328 | 3:+88727101 | MsaT015585.1:intron |
| AGGATTTGTCTTATTGCGAG+GGG | 0.694535 | 3:+88717853 | MsaT015585.1:intron |
| AGGATTTGTCTTATTGCGAG+GGG | 0.694535 | 3:+88728087 | MsaT015585.1:intron |
| TATGTGCTTCATCTGAACAG+CGG | 0.719697 | 3:-88739346 | None:intergenic |
| CTACGTACCACACCACTGGG+CGG | 0.729734 | 3:-88724645 | None:intergenic |
| ATATCATGAGAAAATTGACA+GGG | 0.739765 | 3:+88739801 | MsaT015585.1:CDS |
| ATGTATTGACCACTATAATG+TGG | 0.749035 | 3:+88717717 | MsaT015585.1:CDS |
| ATGTATTGACCACTATAATG+TGG | 0.749035 | 3:+88727951 | MsaT015585.1:CDS |
| GATTAAGAGAGGTCTCAGGG+AGG | 0.750176 | 3:-88739857 | None:intergenic |
| CTATTTGCCACAATTCAAGG+AGG | 0.755896 | 3:+88729675 | MsaT015585.1:CDS |
| TATGGTCCCAAACAATCACG+GGG | 0.764700 | 3:+88739436 | MsaT015585.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 88717362 | 88739865 | 88717362 | ID=MsaG015585 |
| Chr3 | mRNA | 88717362 | 88739865 | 88717362 | ID=MsaT015585.1;Parent=MsaG015585 |
| Chr3 | exon | 88717362 | 88717418 | 88717362 | ID=MsaT015585.1.exon1;Parent=MsaT015585.1 |
| Chr3 | CDS | 88717362 | 88717418 | 88717362 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88717646 | 88717771 | 88717646 | ID=MsaT015585.1.exon2;Parent=MsaT015585.1 |
| Chr3 | CDS | 88717646 | 88717771 | 88717646 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88717855 | 88717927 | 88717855 | ID=MsaT015585.1.exon3;Parent=MsaT015585.1 |
| Chr3 | CDS | 88717855 | 88717927 | 88717855 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88721840 | 88721938 | 88721840 | ID=MsaT015585.1.exon4;Parent=MsaT015585.1 |
| Chr3 | CDS | 88721840 | 88721938 | 88721840 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88724594 | 88724659 | 88724594 | ID=MsaT015585.1.exon5;Parent=MsaT015585.1 |
| Chr3 | CDS | 88724594 | 88724659 | 88724594 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88726863 | 88726991 | 88726863 | ID=MsaT015585.1.exon6;Parent=MsaT015585.1 |
| Chr3 | CDS | 88726863 | 88726991 | 88726863 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88727105 | 88727289 | 88727105 | ID=MsaT015585.1.exon7;Parent=MsaT015585.1 |
| Chr3 | CDS | 88727105 | 88727289 | 88727105 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88727695 | 88727760 | 88727695 | ID=MsaT015585.1.exon8;Parent=MsaT015585.1 |
| Chr3 | CDS | 88727695 | 88727760 | 88727695 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88727880 | 88728005 | 88727880 | ID=MsaT015585.1.exon9;Parent=MsaT015585.1 |
| Chr3 | CDS | 88727880 | 88728005 | 88727880 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88728089 | 88728161 | 88728089 | ID=MsaT015585.1.exon10;Parent=MsaT015585.1 |
| Chr3 | CDS | 88728089 | 88728161 | 88728089 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88729638 | 88729698 | 88729638 | ID=MsaT015585.1.exon11;Parent=MsaT015585.1 |
| Chr3 | CDS | 88729638 | 88729698 | 88729638 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88739027 | 88739225 | 88739027 | ID=MsaT015585.1.exon12;Parent=MsaT015585.1 |
| Chr3 | CDS | 88739027 | 88739225 | 88739027 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88739326 | 88739571 | 88739326 | ID=MsaT015585.1.exon13;Parent=MsaT015585.1 |
| Chr3 | CDS | 88739326 | 88739571 | 88739326 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Chr3 | exon | 88739668 | 88739865 | 88739668 | ID=MsaT015585.1.exon14;Parent=MsaT015585.1 |
| Chr3 | CDS | 88739668 | 88739865 | 88739668 | ID=cds.MsaT015585.1;Parent=MsaT015585.1 |
| Gene Sequence |
| Protein sequence |