AlfalfaGEDB | MsaG015619

M. sativa ssp. caerulea / MsaG015619

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00643.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015619	XP_003601522.1	99.270	411	3	0	1	411	1	411	0.0	846

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015619	sp\|Q9SSE5\|COL9_ARATH	52.955	423	136	10	1	411	1	372	9.24e-142	411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015619	tr\|G7J8U1\|G7J8U1_MEDTR	99.270	411	3	0	1	411	1	411	0.0	846

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015619	TF	C2C2-CO-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015619	MtrunA17_Chr3g0120711	99.270	411	3	0	1	411	1	411	0.0	846
MsaG015619	MtrunA17_Chr5g0429341	68.916	415	118	7	1	410	1	409	0.0	514
MsaG015619	MtrunA17_Chr2g0322941	51.818	110	52	1	1	110	40	148	8.10e-33	124
MsaG015619	MtrunA17_Chr7g0268691	48.544	103	53	0	5	107	20	122	1.84e-29	117
MsaG015619	MtrunA17_Chr7g0268691	62.500	48	18	0	348	395	322	369	7.35e-12	66.6
MsaG015619	MtrunA17_Chr1g0209071	44.860	107	57	1	1	107	1	105	1.03e-24	103
MsaG015619	MtrunA17_Chr2g0322951	49.550	111	40	3	303	405	41	143	1.45e-24	98.6
MsaG015619	MtrunA17_Chr7g0251781	35.971	139	81	2	1	132	1	138	9.29e-22	96.3
MsaG015619	MtrunA17_Chr7g0251781	56.061	66	29	0	331	396	318	383	1.34e-14	75.1
MsaG015619	MtrunA17_Chr1g0150471	44.048	84	46	1	4	86	5	88	4.71e-17	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015619	AT3G07650.3	52.955	423	136	10	1	411	1	372	9.40e-143	411
MsaG015619	AT3G07650.2	52.955	423	136	10	1	411	1	372	9.40e-143	411
MsaG015619	AT3G07650.4	52.955	423	136	10	1	411	1	372	9.40e-143	411
MsaG015619	AT3G07650.1	52.955	423	136	10	1	411	1	372	9.40e-143	411
MsaG015619	AT5G48250.1	53.699	419	140	10	1	411	1	373	1.37e-140	406
MsaG015619	AT3G21880.3	34.063	411	210	11	5	408	9	365	2.21e-61	203
MsaG015619	AT3G21880.2	34.063	411	210	11	5	408	9	365	2.21e-61	203
MsaG015619	AT3G21880.1	34.063	411	210	11	5	408	5	361	2.28e-61	202
MsaG015619	AT4G15250.1	53.153	111	50	2	5	115	5	113	6.87e-34	129
MsaG015619	AT4G15250.1	51.020	98	45	1	307	404	232	326	8.63e-20	90.1

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Find 90 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCTTCAGAATGAGTG+AGG	0.617795	3:+89157260	None:intergenic
AAGAAAGTTCGGCCGACGAA+GGG	0.569995	3:+89157885	None:intergenic
AAGCTCTTCAGAATGAGTGA+GGG	0.667176	3:+89157261	None:intergenic
AAGGGCCGGTTTGTTAAAGC+CGG	0.538044	3:-89156070	MsaT015619.1:CDS
AATTGTGATTGGTTAGGTCA+TGG	0.558365	3:-89157962	MsaT015619.1:CDS
ACACTCAGTAGCTTCTCGTT+TGG	0.446801	3:+89156020	None:intergenic
ACCGGCCCTTCACGCGCCTT+CGG	0.385614	3:+89156083	None:intergenic
ACGCGGTTCTTTGCTTGATT+CGG	0.327280	3:+89157673	None:intergenic
ACTACATGTGAGCAAGAACT+AGG	0.526382	3:-89157821	MsaT015619.1:CDS
AGAAAAGGAAAGGCTCGATT+GGG	0.501130	3:+89156645	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	89156024	89158191	89156024	ID=MsaG015619
Chr3	mRNA	89156024	89158191	89156024	ID=MsaT015619.1;Parent=MsaG015619
Chr3	exon	89156024	89156153	89156024	ID=MsaT015619.1.exon4;Parent=MsaT015619.1
Chr3	CDS	89156024	89156153	89156024	ID=cds.MsaT015619.1;Parent=MsaT015619.1
Chr3	exon	89156472	89156782	89156472	ID=MsaT015619.1.exon3;Parent=MsaT015619.1
Chr3	CDS	89156472	89156782	89156472	ID=cds.MsaT015619.1;Parent=MsaT015619.1
Chr3	exon	89157174	89157404	89157174	ID=MsaT015619.1.exon2;Parent=MsaT015619.1
Chr3	CDS	89157174	89157404	89157174	ID=cds.MsaT015619.1;Parent=MsaT015619.1
Chr3	exon	89157628	89158191	89157628	ID=MsaT015619.1.exon1;Parent=MsaT015619.1
Chr3	CDS	89157628	89158191	89157628	ID=cds.MsaT015619.1;Parent=MsaT015619.1

Gene Sequence

>MsaT015619.1

ATGGGTTACATATGTGATTTTTGTGGAGATCAACGGTCCATGGTGTACTGTCGCTCAGATGCGGCTTGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCAGCAAATACCCTTGCTCGAAGACATTCAAGGACTCTTTTGTGTGAGAGATGCAGTTCACAACCTGCTTTGGTTAGGTGTTCTGAAGAGAAAGTTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAACTCTACATCTTCCAATCATAAGAGGCAAACGATCAATTGCTACTCAGGTTGCCCTTCGTCGGCCGAACTTTCTTCGATATGGTCTTTTGTGTTAGATATCCCTTCTCTGAGTGAAACTACATGTGAGCAAGAACTAGGTTTCATGAGTATTAATGAGAATAGGAGTGCTTGGGTTGATCCGAAAAATCAGAACGTGTCTGATTCAGATAAAGCTACTGATCTACCTGATTTGGATAAGTCTTTCGCCGGTACATCCTCAAAGCCCGAATCAAGCAAAGAACCGCGTATGCTCGACCGCCCAGATGGATCTACCAATGAATGTGTACCAAAGGTATACTGTCCTGCTACAAATTGCCCTGAAGCAAGTGATGATGATGATGATCTGTATGGCGATTTCGATATGGATGAAATGGATATAAATATGGAGAACTATGACGAACTTTTTGGTATGGCCCTCACTCATTCTGAAGAGCTTTTTGAAAATGGTGGATTTAACAGTTTATTTGGGGCAAAAGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTAATGCTGCTGAGGGTTCATCAATTGGACATGTCAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCCATATTGAGCACTAAAACTGAACCGAATCTTTGTATTACTGCAAAGCAATCCCAATCGAGCCTTTCCTTTTCTGGTATTAATGAAGACGGTGGTGCTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCTGAGAATGAGCTACAACTACAATCTGCAAACCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAAAAGACACGCAAGTTTGACAAGAGAGTGAGATATGCCTCTCGCAAGGAAAGGGCTGATGTCCGAAGGCGCGTGAAGGGCCGGTTTGTTAAAGCCGGCGAGGCCTATGATTATGACCCTTTGAGCCAAACGAGAAGCTACTGA

Protein sequence

>MsaT015619.1

MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKVSLCQNCDWLGHGNSTSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNVSDSDKATDLPDLDKSFAGTSSKPESSKEPRMLDRPDGSTNECVPKVYCPATNCPEASDDDDDLYGDFDMDEMDINMENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY*