AlfalfaGEDB | MsaG015674

M. sativa ssp. caerulea / MsaG015674

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015674	XP_003601577.1	89.071	183	17	1	1	183	24	203	4.56e-113	330

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015674	sp\|A7SLC8\|NAT9_NEMVE	54.902	153	65	2	2	153	21	170	3.87e-49	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015674	tr\|G7J9I9\|G7J9I9_MEDTR	89.071	183	17	1	1	183	24	203	2.18e-113	330

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015674	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015674	MtrunA17_Chr3g0121041	89.071	183	17	1	1	183	24	203	4.19e-117	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015674	AT2G04845.1	64.481	183	62	1	1	183	22	201	4.37e-78	232
MsaG015674	AT2G04845.3	69.799	149	45	0	1	149	22	170	3.01e-76	227
MsaG015674	AT2G04845.4	69.799	149	45	0	1	149	22	170	3.04e-76	227
MsaG015674	AT2G04845.2	69.799	149	45	0	1	149	22	170	3.10e-76	226
MsaG015674	AT2G04845.5	66.460	161	53	1	1	160	22	182	1.73e-75	225

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Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTATTGACCTTCAACG+TGG	0.591929	3:+89727391	None:intergenic
AATAACACAAGCCAAGAATG+AGG	0.587170	3:-89723850	MsaT015674.1:CDS
ACATTATTGACCTTCAACGT+GGG	0.501922	3:+89727392	None:intergenic
ACCAAGCATCTCCTCATTCT+TGG	0.266496	3:+89723839	None:intergenic
ACGTTCCCAAATATCATGAA+TGG	0.490153	3:-89727572	MsaT015674.1:CDS
AGAAAGGGGTTCGGAAGCAG+TGG	0.587837	3:+89727524	None:intergenic
AGTATCAGATGCAACTCTCA+TGG	0.583647	3:-89727491	MsaT015674.1:CDS
ATACTCTTGTTCGAGAGAAA+GGG	0.455235	3:+89727509	None:intergenic
ATGGTCACGTGATCTCAACA+AGG	0.702832	3:-89727472	MsaT015674.1:CDS
ATTTCAACCTCTGCCACTTG+AGG	0.545729	3:+89727236	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	89723809	89727604	89723809	ID=MsaG015674
Chr3	mRNA	89723809	89727604	89723809	ID=MsaT015674.1;Parent=MsaG015674
Chr3	exon	89723809	89723889	89723809	ID=MsaT015674.1.exon5;Parent=MsaT015674.1
Chr3	CDS	89723809	89723889	89723809	ID=cds.MsaT015674.1;Parent=MsaT015674.1
Chr3	exon	89726038	89726081	89726038	ID=MsaT015674.1.exon4;Parent=MsaT015674.1
Chr3	CDS	89726038	89726081	89726038	ID=cds.MsaT015674.1;Parent=MsaT015674.1
Chr3	exon	89726198	89726334	89726198	ID=MsaT015674.1.exon3;Parent=MsaT015674.1
Chr3	CDS	89726198	89726334	89726198	ID=cds.MsaT015674.1;Parent=MsaT015674.1
Chr3	exon	89727215	89727302	89727215	ID=MsaT015674.1.exon2;Parent=MsaT015674.1
Chr3	CDS	89727215	89727302	89727215	ID=cds.MsaT015674.1;Parent=MsaT015674.1
Chr3	exon	89727403	89727604	89727403	ID=MsaT015674.1.exon1;Parent=MsaT015674.1
Chr3	CDS	89727403	89727604	89727403	ID=cds.MsaT015674.1;Parent=MsaT015674.1

Gene Sequence

>MsaT015674.1

ATGGAACCTCACGTTCCCAAATATCATGAATGGATGCAAGACCCTTCTCTACTTCAAGCCACTGCTTCCGAACCCCTTTCTCTCGAACAAGAGTATCAGATGCAACTCTCATGGTCACGTGATCTCAACAAGGAAACTTTCATTGTCTTGGATAAAGATTTTCTTGTTGGAACTTTCTCTCATGGTCAACCCCACGTTGAAGCTATGGTTGGTGATGTAAATATTTTCATGAATGATATCAATAATCCTCAAGTGGCAGAGGTTGAAATTATGATAGCTGAACAAACCAGCCGTGGCAAAGGACTTGGAAAGGAGTCTGTTTTGATAATGATGGCCTTTGCTATTGAGAAGTTGGGGATCAAAACTTTTCAAGTTAAAATTGGAGAATCAAATGTAGAGTCCATCAACCTGTTCAAAAAACTGGTCTATAACTGGAATATAGAGTCGATATACAAGGAGAACAAAAAAACCGTGACTTTGGAGTTGCAAATAACACAAGCCAAGAATGAGGAGATGCTTGGTTTGATGGGTACTGTGATTAAACACACATAA

Protein sequence

>MsaT015674.1

MEPHVPKYHEWMQDPSLLQATASEPLSLEQEYQMQLSWSRDLNKETFIVLDKDFLVGTFSHGQPHVEAMVGDVNIFMNDINNPQVAEVEIMIAEQTSRGKGLGKESVLIMMAFAIEKLGIKTFQVKIGESNVESINLFKKLVYNWNIESIYKENKKTVTLELQITQAKNEEMLGLMGTVIKHT*