Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015803 | XP_003601767.2 | 97.005 | 434 | 13 | 0 | 1 | 434 | 1 | 434 | 0.0 | 872 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015803 | sp|A2YGR5|SPL12_ORYSI | 43.333 | 300 | 142 | 6 | 94 | 366 | 106 | 404 | 2.94e-65 | 219 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015803 | tr|G7JBG3|G7JBG3_MEDTR | 97.005 | 434 | 13 | 0 | 1 | 434 | 1 | 434 | 0.0 | 872 |
Gene ID | Type | Classification |
---|---|---|
MsaG015803 | TF | SBP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015803 | MtrunA17_Chr3g0122411 | 97.005 | 434 | 13 | 0 | 1 | 434 | 1 | 434 | 0.0 | 872 |
MsaG015803 | MtrunA17_Chr8g0377421 | 48.060 | 335 | 128 | 5 | 1 | 327 | 1 | 297 | 4.20e-88 | 270 |
MsaG015803 | MtrunA17_Chr8g0377401 | 55.061 | 247 | 88 | 5 | 1 | 237 | 1 | 234 | 9.91e-69 | 218 |
MsaG015803 | MtrunA17_Chr8g0377431 | 47.748 | 222 | 94 | 6 | 1 | 218 | 1 | 204 | 3.69e-48 | 164 |
MsaG015803 | MtrunA17_Chr5g0420051 | 41.827 | 208 | 112 | 4 | 39 | 240 | 52 | 256 | 2.39e-40 | 149 |
MsaG015803 | MtrunA17_Chr7g0258471 | 37.545 | 277 | 126 | 7 | 120 | 374 | 91 | 342 | 7.02e-40 | 147 |
MsaG015803 | MtrunA17_Chr7g0231911 | 48.447 | 161 | 79 | 3 | 93 | 249 | 73 | 233 | 4.24e-38 | 140 |
MsaG015803 | MtrunA17_Chr8g0360361 | 70.000 | 80 | 24 | 0 | 163 | 242 | 63 | 142 | 4.18e-36 | 131 |
MsaG015803 | MtrunA17_Chr3g0132091 | 49.606 | 127 | 61 | 3 | 151 | 276 | 58 | 182 | 9.75e-36 | 135 |
MsaG015803 | MtrunA17_Chr4g0061651 | 51.562 | 128 | 55 | 2 | 117 | 240 | 74 | 198 | 2.13e-35 | 136 |
MsaG015803 | MtrunA17_Chr4g0046991 | 55.963 | 109 | 32 | 1 | 130 | 238 | 54 | 146 | 8.37e-35 | 126 |
MsaG015803 | MtrunA17_Chr8g0334671 | 48.684 | 152 | 63 | 3 | 118 | 261 | 147 | 291 | 4.31e-34 | 130 |
MsaG015803 | MtrunA17_Chr7g0224821 | 59.341 | 91 | 34 | 1 | 154 | 244 | 69 | 156 | 7.96e-33 | 127 |
MsaG015803 | MtrunA17_Chr8g0386271 | 56.311 | 103 | 42 | 2 | 164 | 266 | 98 | 197 | 1.39e-32 | 127 |
MsaG015803 | MtrunA17_Chr2g0282521 | 57.895 | 95 | 39 | 1 | 148 | 242 | 48 | 141 | 3.16e-32 | 119 |
MsaG015803 | MtrunA17_Chr2g0308321 | 60.000 | 90 | 36 | 0 | 151 | 240 | 157 | 246 | 5.35e-31 | 125 |
MsaG015803 | MtrunA17_Chr1g0194121 | 56.842 | 95 | 41 | 0 | 150 | 244 | 132 | 226 | 2.63e-29 | 121 |
MsaG015803 | MtrunA17_Chr8g0377391 | 46.296 | 162 | 63 | 5 | 262 | 399 | 1 | 162 | 4.00e-29 | 112 |
MsaG015803 | MtrunA17_Chr2g0302791 | 47.934 | 121 | 55 | 2 | 134 | 247 | 102 | 221 | 1.06e-28 | 119 |
MsaG015803 | MtrunA17_Chr1g0162871 | 58.621 | 87 | 36 | 0 | 163 | 249 | 102 | 188 | 1.86e-28 | 118 |
MsaG015803 | MtrunA17_Chr7g0270541 | 61.250 | 80 | 31 | 0 | 165 | 244 | 145 | 224 | 1.75e-26 | 112 |
MsaG015803 | MtrunA17_Chr2g0286661 | 48.315 | 89 | 46 | 0 | 150 | 238 | 88 | 176 | 6.66e-22 | 98.6 |
MsaG015803 | MtrunA17_Chr2g0317041 | 56.452 | 62 | 27 | 0 | 150 | 211 | 84 | 145 | 2.68e-19 | 84.3 |
MsaG015803 | MtrunA17_Chr1g0175031 | 46.602 | 103 | 49 | 2 | 115 | 211 | 18 | 120 | 9.87e-19 | 82.4 |
MsaG015803 | MtrunA17_Chr8g0377411 | 50.000 | 98 | 41 | 3 | 333 | 425 | 3 | 97 | 6.50e-14 | 67.4 |
MsaG015803 | MtrunA17_Chr1g0175021 | 35.220 | 159 | 96 | 3 | 212 | 368 | 8 | 161 | 6.88e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015803 | AT5G43270.3 | 40.052 | 382 | 164 | 16 | 1 | 353 | 1 | 346 | 1.09e-55 | 190 |
MsaG015803 | AT5G43270.1 | 40.052 | 382 | 164 | 16 | 1 | 353 | 1 | 346 | 1.09e-55 | 190 |
MsaG015803 | AT5G43270.2 | 40.052 | 382 | 164 | 16 | 1 | 353 | 1 | 346 | 1.09e-55 | 190 |
MsaG015803 | AT1G27370.6 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 1.16e-53 | 182 |
MsaG015803 | AT1G27370.1 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 3.97e-53 | 182 |
MsaG015803 | AT1G27370.5 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 3.97e-53 | 182 |
MsaG015803 | AT1G27370.3 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 3.97e-53 | 182 |
MsaG015803 | AT1G27370.2 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 3.97e-53 | 182 |
MsaG015803 | AT1G27370.4 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 3.97e-53 | 182 |
MsaG015803 | AT1G27370.7 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 3.97e-53 | 182 |
MsaG015803 | AT1G27360.2 | 39.267 | 382 | 192 | 15 | 1 | 353 | 1 | 371 | 1.59e-52 | 181 |
MsaG015803 | AT1G27360.1 | 39.267 | 382 | 192 | 15 | 1 | 353 | 1 | 371 | 1.59e-52 | 181 |
MsaG015803 | AT1G27360.3 | 39.267 | 382 | 192 | 15 | 1 | 353 | 1 | 371 | 1.59e-52 | 181 |
MsaG015803 | AT1G27360.4 | 39.267 | 382 | 192 | 15 | 1 | 353 | 1 | 371 | 1.59e-52 | 181 |
MsaG015803 | AT2G42200.1 | 39.837 | 246 | 125 | 9 | 120 | 358 | 32 | 261 | 8.04e-37 | 139 |
MsaG015803 | AT1G69170.1 | 66.304 | 92 | 31 | 0 | 148 | 239 | 107 | 198 | 1.39e-35 | 136 |
MsaG015803 | AT3G57920.1 | 53.279 | 122 | 44 | 3 | 120 | 241 | 27 | 135 | 2.89e-34 | 131 |
MsaG015803 | AT1G02065.1 | 53.279 | 122 | 49 | 2 | 118 | 238 | 147 | 261 | 7.01e-33 | 127 |
MsaG015803 | AT5G50570.1 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.31e-31 | 124 |
MsaG015803 | AT5G50570.2 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.31e-31 | 124 |
MsaG015803 | AT5G50670.1 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.31e-31 | 124 |
MsaG015803 | AT5G50670.2 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.31e-31 | 124 |
MsaG015803 | AT2G33810.1 | 59.091 | 88 | 33 | 1 | 151 | 238 | 43 | 127 | 7.75e-31 | 115 |
MsaG015803 | AT1G76580.2 | 60.674 | 89 | 35 | 0 | 163 | 251 | 112 | 200 | 1.71e-30 | 124 |
MsaG015803 | AT1G76580.3 | 60.674 | 89 | 35 | 0 | 163 | 251 | 112 | 200 | 2.15e-30 | 124 |
MsaG015803 | AT1G76580.1 | 60.674 | 89 | 35 | 0 | 163 | 251 | 112 | 200 | 3.84e-30 | 124 |
MsaG015803 | AT3G60030.1 | 61.250 | 80 | 31 | 0 | 165 | 244 | 127 | 206 | 2.69e-29 | 121 |
MsaG015803 | AT1G53160.3 | 44.444 | 117 | 57 | 1 | 165 | 273 | 54 | 170 | 8.62e-29 | 111 |
MsaG015803 | AT2G47070.1 | 60.215 | 93 | 36 | 1 | 165 | 256 | 106 | 198 | 1.02e-28 | 119 |
MsaG015803 | AT1G53160.2 | 45.385 | 130 | 56 | 4 | 165 | 288 | 54 | 174 | 1.32e-28 | 111 |
MsaG015803 | AT1G53160.1 | 45.385 | 130 | 56 | 4 | 165 | 288 | 54 | 174 | 1.32e-28 | 111 |
MsaG015803 | AT1G20980.1 | 60.000 | 95 | 37 | 1 | 151 | 244 | 106 | 200 | 2.94e-28 | 118 |
MsaG015803 | AT3G15270.1 | 60.811 | 74 | 29 | 0 | 165 | 238 | 63 | 136 | 4.12e-28 | 110 |
MsaG015803 | AT1G02065.2 | 46.875 | 96 | 43 | 2 | 118 | 212 | 147 | 235 | 6.15e-19 | 86.3 |
MsaG015803 | AT5G18830.2 | 51.316 | 76 | 36 | 1 | 165 | 239 | 138 | 213 | 5.17e-18 | 87.0 |
MsaG015803 | AT5G18830.3 | 51.316 | 76 | 36 | 1 | 165 | 239 | 138 | 213 | 5.29e-18 | 87.0 |
MsaG015803 | AT5G18830.1 | 51.316 | 76 | 36 | 1 | 165 | 239 | 138 | 213 | 5.47e-18 | 87.0 |
MsaG015803 | AT2G47070.2 | 60.294 | 68 | 26 | 1 | 190 | 256 | 2 | 69 | 2.28e-16 | 82.0 |
Find 115 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGATCAGACAAGGTATT+TGG | 0.193506 | 3:+91145531 | None:intergenic |
GCTAAATTTGAAGTATTCTT+TGG | 0.209568 | 3:+91145903 | None:intergenic |
TGCAGAGGAAGAGGCTTTCT+TGG | 0.222637 | 3:+91146866 | None:intergenic |
AGCTTGCTGTTGGGCATGTC+TGG | 0.241731 | 3:+91145876 | None:intergenic |
GGATTCAATTTCACTGCTTC+AGG | 0.274502 | 3:+91146444 | None:intergenic |
GAGCATAAAATCTTTGGTTT+GGG | 0.292731 | 3:+91145851 | None:intergenic |
TTTAGACGATTCTTTCTTAC+CGG | 0.323854 | 3:+91146986 | None:intergenic |
TGAGCATAAAATCTTTGGTT+TGG | 0.329729 | 3:+91145850 | None:intergenic |
TTAACATCTTGTGTAGCATT+TGG | 0.347549 | 3:+91145513 | None:intergenic |
GCAAGGGAAACTTGACTCAT+AGG | 0.354069 | 3:+91145251 | None:intergenic |
AATCTTGGTTCCTTTGCCTT+TGG | 0.356006 | 3:+91145761 | None:intergenic |
TTGTGGCCTCGACCTCTCTT+TGG | 0.373974 | 3:-91146769 | MsaT015803.1:CDS |
CTCTTCTGTCAACCAATTCA+TGG | 0.377885 | 3:-91145479 | MsaT015803.1:CDS |
TACTACCACCACAGGCGATT+TGG | 0.381836 | 3:+91146704 | None:intergenic |
TTCTTACCGGTGGAATTGTC+TGG | 0.385894 | 3:+91146999 | None:intergenic |
ACATGCACCTGCTACATTGC+TGG | 0.389565 | 3:+91146658 | None:intergenic |
AATCTCCCGGGCAATGGGAC+TGG | 0.397861 | 3:-91147259 | MsaT015803.1:CDS |
GCTGCTGGAGAAGTTTCAAT+TGG | 0.402606 | 3:+91146957 | None:intergenic |
AGCTGCCAGGTGGAAGGTTG+TGG | 0.411491 | 3:-91146786 | MsaT015803.1:CDS |
ATCTCCCGGGCAATGGGACT+GGG | 0.414643 | 3:-91147258 | MsaT015803.1:CDS |
CAGCGCCTGTATCTCGTTCT+CGG | 0.419065 | 3:-91145322 | MsaT015803.1:CDS |
AATTTCACTGCTTCAGGCTG+AGG | 0.421915 | 3:+91146450 | None:intergenic |
ACAATCTACTGATTGGAGTA+TGG | 0.424631 | 3:-91147189 | MsaT015803.1:CDS |
CGTGAAATCTCCCGGGCAAT+GGG | 0.426658 | 3:-91147264 | MsaT015803.1:CDS |
CAATATTCCAGTGACGAAAA+AGG | 0.427818 | 3:+91145372 | None:intergenic |
GTGAGCAATGGTTCTGCTGC+TGG | 0.432022 | 3:+91146942 | None:intergenic |
ACAACCTGGGACAGCAATCT+TGG | 0.439368 | 3:+91145746 | None:intergenic |
AAGTTTCCCTTGCAACCAGC+TGG | 0.440887 | 3:-91145241 | MsaT015803.1:CDS |
ATACACTCCAATCGGACAAC+CGG | 0.451604 | 3:-91145426 | MsaT015803.1:CDS |
TACTTTGAGGATGTTAGCAC+TGG | 0.451656 | 3:-91146897 | MsaT015803.1:CDS |
TCTTCTGTCAACCAATTCAT+GGG | 0.452114 | 3:-91145478 | MsaT015803.1:CDS |
CGAGATACAGGCGCTGGAGC+TGG | 0.455430 | 3:+91145329 | None:intergenic |
GTATTCTTTGGAAAAGCAAA+TGG | 0.460493 | 3:+91145915 | None:intergenic |
CATCAAACTCTGAGAGATCA+TGG | 0.461380 | 3:+91146529 | None:intergenic |
CAACCTTCCACCTGGCAGCT+TGG | 0.467365 | 3:+91146789 | None:intergenic |
TCGCCTGTGGTGGTAGTAGC+TGG | 0.470263 | 3:-91146699 | MsaT015803.1:CDS |
GTTGGGATGTTGATTCCATC+TGG | 0.471449 | 3:-91147146 | MsaT015803.1:CDS |
CCTTTCTTTCCGCACAAAAG+AGG | 0.471950 | 3:+91146840 | None:intergenic |
ACAGGTTACAATCTACTGAT+TGG | 0.476801 | 3:-91147196 | MsaT015803.1:CDS |
TGGTAAAAGATTCTACTTTG+AGG | 0.477123 | 3:-91146910 | MsaT015803.1:CDS |
AGGGGTGCCGGTTGTCCGAT+TGG | 0.477616 | 3:+91145419 | None:intergenic |
TGTGGTGGTAGTAGCTGGTT+TGG | 0.481417 | 3:-91146694 | MsaT015803.1:CDS |
ACGTGAAATCTCCCGGGCAA+TGG | 0.485685 | 3:-91147265 | MsaT015803.1:CDS |
GAAGATCGAGAAATCAATGT+TGG | 0.486543 | 3:-91147164 | MsaT015803.1:CDS |
AAGAGGAACTGCAGAGGAAG+AGG | 0.487764 | 3:+91146857 | None:intergenic |
ATCATATGGACCCCATGAAT+TGG | 0.492799 | 3:+91145467 | None:intergenic |
TTGTCCGATTGGAGTGTATG+AGG | 0.494492 | 3:+91145430 | None:intergenic |
AGCATACTCATTAATCCAGC+TGG | 0.497222 | 3:+91145226 | None:intergenic |
GATTGGAGTGTATGAGGGAG+GGG | 0.501793 | 3:+91145436 | None:intergenic |
CTTTGCCTTTGGATATAAAG+TGG | 0.501899 | 3:+91145772 | None:intergenic |
GAGTGGAACGTGAAATCTCC+CGG | 0.503280 | 3:-91147272 | MsaT015803.1:CDS |
CATTAATCCAGCTGGTTGCA+AGG | 0.507260 | 3:+91145234 | None:intergenic |
TTGATTCCATCTGGTGGTAG+TGG | 0.508737 | 3:-91147137 | MsaT015803.1:CDS |
AAGATCGAGAAATCAATGTT+GGG | 0.508795 | 3:-91147163 | MsaT015803.1:CDS |
CACAAATTCTATGTTTCCGA+TGG | 0.510237 | 3:+91146736 | None:intergenic |
CAAGGGAAACTTGACTCATA+GGG | 0.517421 | 3:+91145252 | None:intergenic |
CATGCTAAATCCAAGCTGCC+AGG | 0.528294 | 3:-91146799 | MsaT015803.1:CDS |
GTAACCCGAGAACGAGATAC+AGG | 0.528459 | 3:+91145317 | None:intergenic |
CGATTGGAGTGTATGAGGGA+GGG | 0.531040 | 3:+91145435 | None:intergenic |
CCTCCCTCATACACTCCAAT+CGG | 0.535964 | 3:-91145434 | MsaT015803.1:CDS |
AGCGCCTGTATCTCGTTCTC+GGG | 0.540985 | 3:-91145321 | MsaT015803.1:CDS |
TGCAGATGGGAGGCAGACAA+TGG | 0.543420 | 3:-91145940 | MsaT015803.1:intron |
ACATCAATGTTAACTCAAGA+AGG | 0.548574 | 3:-91147026 | MsaT015803.1:CDS |
GGAACCAAGATTGCTGTCCC+AGG | 0.548599 | 3:-91145750 | MsaT015803.1:intron |
CAAAAGCAGCAGAAACTCAC+AGG | 0.550624 | 3:-91147214 | MsaT015803.1:CDS |
GGTAAGAAAGAATCGTCTAA+AGG | 0.551763 | 3:-91146984 | MsaT015803.1:CDS |
TTGGCACACTGATCAACATC+AGG | 0.552387 | 3:-91145352 | MsaT015803.1:CDS |
TTTGGATATAAAGTGGCCAC+TGG | 0.552682 | 3:+91145779 | None:intergenic |
AGTTGCATACTGAGGGGTGC+CGG | 0.554723 | 3:+91145407 | None:intergenic |
CCAAGCTTTAGTGTGAGCAA+TGG | 0.557830 | 3:+91146930 | None:intergenic |
GGGGACGAAGAGAGAGCTGA+TGG | 0.559258 | 3:+91146423 | None:intergenic |
ATTGGAGTGTATGAGGGAGG+GGG | 0.561383 | 3:+91145437 | None:intergenic |
AGAATACTTCAAATTTAGCA+TGG | 0.561391 | 3:-91145899 | MsaT015803.1:CDS |
GAATAATTCATCATCAAATG+AGG | 0.562543 | 3:-91147057 | MsaT015803.1:CDS |
GCAGATGGGAGGCAGACAAT+GGG | 0.563322 | 3:-91145939 | MsaT015803.1:intron |
ATTAATCCAGCTGGTTGCAA+GGG | 0.568989 | 3:+91145235 | None:intergenic |
CGCTGAGCAGTTGCATACTG+AGG | 0.570454 | 3:+91145399 | None:intergenic |
AATCCAAGCTGCCAGGTGGA+AGG | 0.571632 | 3:-91146792 | MsaT015803.1:CDS |
CTTTAGCCAAAGAGAGGTCG+AGG | 0.573405 | 3:+91146763 | None:intergenic |
CGAGGCCACAACCTTCCACC+TGG | 0.580184 | 3:+91146781 | None:intergenic |
CTTGAGATTTATACCATAGG+GGG | 0.580458 | 3:+91146404 | None:intergenic |
AGACGATTCTTTCTTACCGG+TGG | 0.582162 | 3:+91146989 | None:intergenic |
AGTGGCCACTTTATATCCAA+AGG | 0.587042 | 3:-91145777 | MsaT015803.1:CDS |
CCATTGCTCACACTAAAGCT+TGG | 0.588106 | 3:-91146930 | MsaT015803.1:CDS |
CTTTGGCTAAAGATTACCAT+CGG | 0.588534 | 3:-91146752 | MsaT015803.1:CDS |
TGTCCGATTGGAGTGTATGA+GGG | 0.588850 | 3:+91145431 | None:intergenic |
GTCTTTCAGATCACAATGCA+AGG | 0.591028 | 3:-91146482 | MsaT015803.1:CDS |
GCATAAAATCTTTGGTTTGG+GGG | 0.594228 | 3:+91145853 | None:intergenic |
GCTGAGCAGTTGCATACTGA+GGG | 0.602329 | 3:+91145400 | None:intergenic |
TTGACAGAAGAGAGAGAGCA+CGG | 0.603893 | 3:+91145490 | None:intergenic |
AGCATAAAATCTTTGGTTTG+GGG | 0.604215 | 3:+91145852 | None:intergenic |
CCGATTGGAGTGTATGAGGG+AGG | 0.604444 | 3:+91145434 | None:intergenic |
CACTTTATATCCAAAGGCAA+AGG | 0.613225 | 3:-91145771 | MsaT015803.1:CDS |
CGAGAACGAGATACAGGCGC+TGG | 0.614056 | 3:+91145323 | None:intergenic |
AAACCAGCTACTACCACCAC+AGG | 0.617364 | 3:+91146696 | None:intergenic |
TTGCATTGTGATCTGAAAGA+CGG | 0.621589 | 3:+91146484 | None:intergenic |
TGTGAGGACTTGTCATGGAG+TGG | 0.623994 | 3:-91147289 | None:intergenic |
GAATAGCCACTACCACCAGA+TGG | 0.631021 | 3:+91147131 | None:intergenic |
TCATTCCAAATCGCCTGTGG+TGG | 0.632811 | 3:-91146709 | MsaT015803.1:CDS |
CTTCTGTCAACCAATTCATG+GGG | 0.634971 | 3:-91145477 | MsaT015803.1:CDS |
AGTGGAACGTGAAATCTCCC+GGG | 0.641060 | 3:-91147271 | MsaT015803.1:CDS |
ATCTACTGATTGGAGTATGG+AGG | 0.643141 | 3:-91147186 | MsaT015803.1:CDS |
TTGGAGTGTATGAGGGAGGG+GGG | 0.645515 | 3:+91145438 | None:intergenic |
GGGATGTTGATTCCATCTGG+TGG | 0.647072 | 3:-91147143 | MsaT015803.1:CDS |
CAGTCATTCCAAATCGCCTG+TGG | 0.648152 | 3:-91146712 | MsaT015803.1:CDS |
TGTAGCATTTGGATCAGACA+AGG | 0.648361 | 3:+91145524 | None:intergenic |
ATATTCATTCTGCAGATGGG+AGG | 0.649420 | 3:-91145950 | MsaT015803.1:intron |
GGTTCTCCAGACAATTCCAC+CGG | 0.652614 | 3:-91147005 | MsaT015803.1:CDS |
TCTTGAGATTTATACCATAG+GGG | 0.653113 | 3:+91146403 | None:intergenic |
GGTAATCTTTAGCCAAAGAG+AGG | 0.662641 | 3:+91146757 | None:intergenic |
CTGAGCAGTTGCATACTGAG+GGG | 0.662729 | 3:+91145401 | None:intergenic |
GCTAAATCCAAGCTGCCAGG+TGG | 0.663879 | 3:-91146796 | MsaT015803.1:CDS |
ATGCTATCTGATGATTCCAG+TGG | 0.666446 | 3:-91145795 | MsaT015803.1:CDS |
TAATGCATGCTTCATCCTCG+AGG | 0.674783 | 3:-91147097 | MsaT015803.1:CDS |
GCACAAAAGAGGAACTGCAG+AGG | 0.694164 | 3:+91146851 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 91145236 | 91147297 | 91145236 | ID=MsaG015803 |
Chr3 | mRNA | 91145236 | 91147297 | 91145236 | ID=MsaT015803.1;Parent=MsaG015803 |
Chr3 | exon | 91145236 | 91145564 | 91145236 | ID=MsaT015803.1.exon4;Parent=MsaT015803.1 |
Chr3 | CDS | 91145236 | 91145564 | 91145236 | ID=cds.MsaT015803.1;Parent=MsaT015803.1 |
Chr3 | exon | 91145751 | 91145957 | 91145751 | ID=MsaT015803.1.exon3;Parent=MsaT015803.1 |
Chr3 | CDS | 91145751 | 91145957 | 91145751 | ID=cds.MsaT015803.1;Parent=MsaT015803.1 |
Chr3 | exon | 91146418 | 91146554 | 91146418 | ID=MsaT015803.1.exon2;Parent=MsaT015803.1 |
Chr3 | CDS | 91146418 | 91146554 | 91146418 | ID=cds.MsaT015803.1;Parent=MsaT015803.1 |
Chr3 | exon | 91146666 | 91147297 | 91146666 | ID=MsaT015803.1.exon1;Parent=MsaT015803.1 |
Chr3 | CDS | 91146666 | 91147297 | 91146666 | ID=cds.MsaT015803.1;Parent=MsaT015803.1 |
Gene Sequence |
Protein sequence |