AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015809


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015809 MtrunA17_Chr3g0122351 94.038 956 26 1 1 925 1 956 0.0 1873
MsaG015809 MtrunA17_Chr8g0377501 57.505 986 316 13 1 911 8 965 0.0 1045
MsaG015809 MtrunA17_Chr4g0068161 30.240 959 542 30 8 904 26 919 1.10e-106 352
MsaG015809 MtrunA17_Chr2g0279141 35.738 610 302 13 375 911 439 1031 1.12e-102 343
MsaG015809 MtrunA17_Chr2g0279141 49.721 179 82 3 4 175 10 187 1.06e-43 172
MsaG015809 MtrunA17_Chr8g0382191 39.122 501 272 7 402 880 551 1040 6.98e-99 334
MsaG015809 MtrunA17_Chr8g0382191 58.065 124 52 0 6 129 8 131 1.56e-43 171
MsaG015809 MtrunA17_Chr4g0050401 34.648 583 280 13 375 880 426 984 1.59e-91 313
MsaG015809 MtrunA17_Chr4g0050401 48.921 139 71 0 4 142 10 148 3.77e-38 154
MsaG015809 MtrunA17_Chr2g0294711 32.621 515 303 12 387 877 392 886 1.63e-65 237
MsaG015809 MtrunA17_Chr2g0294711 52.703 148 68 1 8 155 26 171 8.00e-41 162
MsaG015809 MtrunA17_Chr8g0382181 55.556 81 36 0 48 128 7 87 4.13e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015809 AT1G67310.1 46.647 1014 416 24 5 924 34 1016 0.0 762
MsaG015809 AT5G09410.4 36.879 564 290 14 402 920 338 880 4.01e-96 323
MsaG015809 AT5G09410.1 34.720 625 343 15 341 920 379 983 2.84e-95 323
MsaG015809 AT5G09410.1 51.825 137 66 0 1 137 10 146 7.03e-42 166
MsaG015809 AT5G09410.2 34.720 625 343 15 341 920 397 1001 4.15e-95 322
MsaG015809 AT5G09410.2 51.825 137 66 0 1 137 10 146 7.00e-42 166
MsaG015809 AT5G09410.3 34.720 625 343 15 341 920 456 1060 6.89e-95 323
MsaG015809 AT5G09410.3 53.488 129 55 1 1 124 69 197 4.63e-38 154
MsaG015809 AT5G64220.1 39.600 500 263 13 406 878 512 999 1.45e-94 322
MsaG015809 AT5G64220.1 47.879 165 84 1 6 168 12 176 1.30e-43 172
MsaG015809 AT5G64220.2 39.600 500 263 13 406 878 512 999 1.45e-94 322
MsaG015809 AT5G64220.2 47.879 165 84 1 6 168 12 176 1.30e-43 172
MsaG015809 AT2G22300.3 38.306 496 264 9 402 880 453 923 8.68e-94 318
MsaG015809 AT2G22300.3 51.240 121 58 1 53 172 1 121 4.55e-31 132
MsaG015809 AT2G22300.2 38.306 496 264 9 402 880 511 981 1.86e-93 318
MsaG015809 AT2G22300.2 45.614 171 92 1 3 172 9 179 3.50e-42 167
MsaG015809 AT2G22300.1 38.306 496 264 9 402 880 511 981 1.86e-93 318
MsaG015809 AT2G22300.1 45.614 171 92 1 3 172 9 179 3.50e-42 167
MsaG015809 AT3G16940.3 31.985 544 316 13 375 893 303 817 7.55e-66 237
MsaG015809 AT3G16940.3 52.414 145 66 2 12 156 1 142 1.16e-39 159
MsaG015809 AT3G16940.1 32.169 544 315 14 375 893 330 844 9.73e-66 237
MsaG015809 AT3G16940.1 51.007 149 70 2 8 156 24 169 4.71e-40 160
MsaG015809 AT3G16940.2 29.977 437 256 11 375 788 330 739 1.31e-42 167
MsaG015809 AT3G16940.2 51.007 149 70 2 8 156 24 169 2.79e-40 160

Find 218 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGTAAATTTCTGTTTC+TGG 0.128293 3:+91270542 None:intergenic
CATCCCGAGGTTCTTGAATT+TGG 0.192741 3:+91270587 None:intergenic
TATAATCCCTTGCTCTTTCT+TGG 0.193263 3:+91269240 None:intergenic
GGGATTATACACATAGTTTC+TGG 0.215272 3:-91269226 MsaT015809.1:CDS
AATTTCATGCTCATTATAAA+AGG 0.224864 3:+91275075 None:intergenic
TGAGTTTCTATTGAAGAATA+TGG 0.231372 3:+91270652 None:intergenic
GCCTCCACCACTTGTCTAAA+TGG 0.241617 3:-91268113 MsaT015809.1:CDS
TCATTGGCATAACAATATTC+TGG 0.250713 3:+91270508 None:intergenic
TTCGAAAAGATGGTCATAAT+TGG 0.253911 3:-91277154 MsaT015809.1:CDS
AATGGATATGTCACCGGTTT+AGG 0.257839 3:-91268095 MsaT015809.1:CDS
TTGCATTCACTGTAATGTTT+TGG 0.270778 3:-91269557 MsaT015809.1:CDS
CAGTCCCTTGTGCCCATTGC+TGG 0.272292 3:+91268397 None:intergenic
GAAACGCCTCTATCTTCTTT+TGG 0.274448 3:-91270881 MsaT015809.1:CDS
TTGAAGAATATGGAGAAAAT+TGG 0.278554 3:+91270662 None:intergenic
TTCTCATCATTATTGCTGTT+GGG 0.280715 3:+91270815 None:intergenic
GTTTCCAGAGGCGAAGTTAT+TGG 0.289983 3:-91276403 MsaT015809.1:CDS
CAACCATATGATGGATATAA+TGG 0.292630 3:-91275019 MsaT015809.1:CDS
GTGCATTACTTCAGGAAATA+AGG 0.299775 3:-91269629 MsaT015809.1:CDS
CCATTTGGATCTTGTGAACT+TGG 0.310113 3:+91268443 None:intergenic
GAGGCTCCGTCCCATCTTCT+TGG 0.324091 3:-91269664 MsaT015809.1:CDS
TCAAGCTCAGAAGAATCTTT+AGG 0.325777 3:+91268305 None:intergenic
GGCAATACAAGCTAATGATA+TGG 0.326426 3:-91267705 MsaT015809.1:CDS
CTAGGAGAGCATCTATAATA+TGG 0.330922 3:+91269386 None:intergenic
TGCATCTTCATCTCGTTCAT+TGG 0.331556 3:+91269276 None:intergenic
ATAACAGTTCTTCTGGACTA+TGG 0.334037 3:+91269521 None:intergenic
CACAACTGAGAATGGGGTTC+AGG 0.337492 3:+91269185 None:intergenic
GCATCTATTGCGGCCAGCAA+TGG 0.343835 3:-91268410 MsaT015809.1:CDS
CTTCATTGGGCTGCACGGTT+TGG 0.345093 3:-91269121 MsaT015809.1:CDS
ACAAGTAATAACAGTTCTTC+TGG 0.345367 3:+91269514 None:intergenic
CCTCTCTGCTTCGATTATAA+AGG 0.347695 3:-91269473 MsaT015809.1:CDS
AACTTAATTGTTCCTCCAAT+TGG 0.352792 3:+91275128 None:intergenic
GTTGGGGTGTATCCGGTAAC+TGG 0.354213 3:+91270832 None:intergenic
CGCACAAGCTCTGCGCCAAT+TGG 0.355249 3:-91275143 MsaT015809.1:CDS
TCCTTGTATGCGTGTTGTTT+TGG 0.357909 3:+91271307 None:intergenic
GGGAAAATCGGTGAACTTGC+AGG 0.359647 3:+91277353 None:intergenic
TATGGTTGTTTATGATCATC+TGG 0.363053 3:+91275034 None:intergenic
TTCACATGAATCACCAACTA+TGG 0.363538 3:+91275258 None:intergenic
CATCTATTGCGGCCAGCAAT+GGG 0.366299 3:-91268409 MsaT015809.1:CDS
GTTCTCATCATTATTGCTGT+TGG 0.366506 3:+91270814 None:intergenic
CTCCAGTCCTGGGTTCTTAG+AGG 0.368654 3:-91275221 MsaT015809.1:CDS
ATTGCTGCTGGTGCATCTGC+TGG 0.368996 3:-91268479 MsaT015809.1:CDS
GATATGGGCAGTTGGAATCT+TGG 0.378012 3:-91267689 MsaT015809.1:CDS
GTGGCATTGGTGGATATGTT+AGG 0.378824 3:-91268073 MsaT015809.1:CDS
ATGATTTATATCAATTTCCT+TGG 0.379049 3:-91266979 MsaT015809.1:CDS
ATGGATGTTGTCTCAGGGTT+TGG 0.382049 3:+91275277 None:intergenic
TGTTACCATGAGGCTGGTTA+AGG 0.382153 3:+91277331 None:intergenic
GTATCCGGTAACTGGTTTCC+TGG 0.383094 3:+91270840 None:intergenic
CTTGACCATGATTGCCCTGC+TGG 0.384698 3:-91271397 MsaT015809.1:CDS
GTTGCTCTGTGCATTACTTC+AGG 0.384723 3:-91269637 MsaT015809.1:CDS
GTTCCATTATATCCATCATA+TGG 0.384932 3:+91275016 None:intergenic
ATGGATGGACTGCCCTTCAT+TGG 0.385897 3:-91269135 MsaT015809.1:CDS
CCAACTATGGATGTTGTCTC+AGG 0.386456 3:+91275271 None:intergenic
CTTGTTTGCAAATGAGGACT+TGG 0.388891 3:+91271333 None:intergenic
TGCTAAGGTGGCGGAGAAAA+CGG 0.391461 3:-91267657 MsaT015809.1:CDS
GAGGTTCTTGAATTTGGCTT+TGG 0.394026 3:+91270593 None:intergenic
TCCACCAATGCCACCTAAAC+CGG 0.398700 3:+91268082 None:intergenic
GTTAATTTCCGTGATATCAA+TGG 0.399308 3:-91269154 MsaT015809.1:CDS
AGAAGCGCATGAACGGCTTA+AGG 0.406373 3:-91277102 MsaT015809.1:intron
GCTTGTATTGCCTCCGAGTC+TGG 0.406666 3:+91267716 None:intergenic
TGGTAACTTGTTTGCAAATG+AGG 0.409912 3:+91271327 None:intergenic
ATACACATAGTTTCTGGATT+GGG 0.416266 3:-91269220 MsaT015809.1:CDS
GTGAACCTTTGTTGCCTCAT+TGG 0.418858 3:+91270492 None:intergenic
AGAAAGCAGATGATGATTCA+TGG 0.418980 3:-91269411 MsaT015809.1:CDS
GATGGATATAATGGAACAAA+AGG 0.419267 3:-91275010 MsaT015809.1:intron
AATCAGAATTTCTCCAGTCC+TGG 0.422608 3:-91275232 MsaT015809.1:CDS
ATGCGTTTCTTTCGAAAAGA+TGG 0.423560 3:-91277164 MsaT015809.1:CDS
AAGGATGATAGCTCAGAATC+TGG 0.430655 3:-91269454 MsaT015809.1:CDS
TATTGCTGTTGGGGTGTATC+CGG 0.432086 3:+91270825 None:intergenic
TTACAGGGGACATCCAATTC+TGG 0.432848 3:-91275352 MsaT015809.1:intron
CAGCATCTCTGTCCAAGATA+AGG 0.435726 3:+91271363 None:intergenic
TGGATGGACTGCCCTTCATT+GGG 0.436126 3:-91269134 MsaT015809.1:CDS
GGACTGGAGAAATTCTGATT+AGG 0.437165 3:+91275235 None:intergenic
TGGCAACACGAGTGATGAAA+TGG 0.437603 3:-91267068 MsaT015809.1:CDS
TGCAGCAATTCAAAAGGCTT+TGG 0.437608 3:-91267542 MsaT015809.1:CDS
CTGCCCTTCATTGGGCTGCA+CGG 0.438440 3:-91269126 MsaT015809.1:CDS
CTTATCTTGGACAGAGATGC+TGG 0.440239 3:-91271362 MsaT015809.1:CDS
CATTGGCATAACAATATTCT+GGG 0.440294 3:+91270509 None:intergenic
CAGCAATGGGCACAAGGGAC+TGG 0.440405 3:-91268396 MsaT015809.1:CDS
GTTGCTTCACTTATTGCTGC+TGG 0.440412 3:-91268491 MsaT015809.1:CDS
ATTACAGTGAATGCAACTAT+TGG 0.441063 3:+91269564 None:intergenic
AAAATGTAAAGCACTTCTAT+AGG 0.441324 3:+91277390 None:intergenic
ATTCATGCCACAACTGAGAA+TGG 0.444168 3:+91269177 None:intergenic
TCAGGCAGCTGCACGTATAC+AGG 0.444713 3:-91268183 MsaT015809.1:CDS
CATCAGTATAATCGCATGCT+TGG 0.446008 3:-91267481 MsaT015809.1:CDS
ATATTTCTTCTGAATTGATA+AGG 0.446959 3:+91268025 None:intergenic
ATGAATTTACGTTGCCAACT+AGG 0.447557 3:+91269368 None:intergenic
TTCATGCCACAACTGAGAAT+GGG 0.447886 3:+91269178 None:intergenic
TCTGGTTCAGCGAATGCAAC+AGG 0.449281 3:+91275052 None:intergenic
CCAACCAGGAAACCAGTTAC+CGG 0.462646 3:-91270844 MsaT015809.1:CDS
CAACTTCTGTGGATGATGCT+TGG 0.463627 3:-91267033 MsaT015809.1:CDS
TATACACATAGTTTCTGGAT+TGG 0.464836 3:-91269221 MsaT015809.1:CDS
GTTTGGGCAGGCTCATGTGA+GGG 0.465902 3:-91267743 MsaT015809.1:intron
CAAACCGTGCAGCCCAATGA+AGG 0.466086 3:+91269122 None:intergenic
TTCAGAAGAAATATAGAGGC+TGG 0.466525 3:-91268016 MsaT015809.1:CDS
AAGAGAAATGATTGCCAACC+AGG 0.467341 3:-91270858 MsaT015809.1:CDS
GAGCTACGACTCTGACTAAA+CGG 0.468229 3:+91275310 None:intergenic
GTGCACATTCTTTCAGAAAA+CGG 0.468978 3:-91268151 MsaT015809.1:CDS
TGCTGTCAGAAATGCAGCTC+AGG 0.471697 3:-91268201 MsaT015809.1:CDS
TCTCTTCCAAAAGAAGATAG+AGG 0.474103 3:+91270875 None:intergenic
TTCTGGATTGGGTTTCGAGT+GGG 0.474526 3:-91269209 MsaT015809.1:CDS
GAGCAACCTTTCCAAGAAGA+TGG 0.475271 3:+91269653 None:intergenic
ACAACTGAGAATGGGGTTCA+GGG 0.477876 3:+91269186 None:intergenic
ATCAGTATAATCGCATGCTT+GGG 0.478091 3:-91267480 MsaT015809.1:CDS
GCTAAGGTGGCGGAGAAAAC+GGG 0.481096 3:-91267656 MsaT015809.1:CDS
TCTCATCATTATTGCTGTTG+GGG 0.481799 3:+91270816 None:intergenic
TTCAAGAAGCTAAGAAAAGA+TGG 0.482062 3:-91277419 MsaT015809.1:CDS
GTTACCATGAGGCTGGTTAA+GGG 0.482952 3:+91277332 None:intergenic
CTTGGAATATTGATGATGCT+TGG 0.484389 3:-91267015 MsaT015809.1:CDS
CATGCCCAGCAGGGCAATCA+TGG 0.486673 3:+91271392 None:intergenic
GTTGGCAACGTAAATTCATC+TGG 0.487682 3:-91269364 MsaT015809.1:CDS
AGGCTGGTTAAGGGGAAAAT+CGG 0.489276 3:+91277341 None:intergenic
ATTATAGATGCTCTCCTAGT+TGG 0.490367 3:-91269382 MsaT015809.1:CDS
GCAATACAAGCTAATGATAT+GGG 0.490598 3:-91267704 MsaT015809.1:CDS
CCGGTAACTGGTTTCCTGGT+TGG 0.491923 3:+91270844 None:intergenic
TGAAGGATAAGCTGCGGCAC+TGG 0.500111 3:-91269312 MsaT015809.1:CDS
TCAATTCAGAAGAAATATAG+AGG 0.500680 3:-91268020 MsaT015809.1:CDS
ATTTCATGCTCATTATAAAA+GGG 0.500746 3:+91275076 None:intergenic
ACATCCAATAACTTCGCCTC+TGG 0.501649 3:+91276399 None:intergenic
TTGACCATGATTGCCCTGCT+GGG 0.501670 3:-91271396 MsaT015809.1:CDS
ACAAGCTCTGCGCCAATTGG+AGG 0.502276 3:-91275140 MsaT015809.1:CDS
ATCAGAATTTCTCCAGTCCT+GGG 0.502563 3:-91275231 MsaT015809.1:CDS
AACTCTTTGATTTCACTGCA+TGG 0.505283 3:+91269604 None:intergenic
GAAAAGATGGTCATAATTGG+CGG 0.506642 3:-91277151 MsaT015809.1:CDS
TAGTGAATCCTCATCATCAC+TGG 0.508175 3:+91268238 None:intergenic
AGTACATGCAGCAATTCAAA+AGG 0.511198 3:-91267548 MsaT015809.1:CDS
ACCGGTTTAGGTGGCATTGG+TGG 0.512373 3:-91268083 MsaT015809.1:CDS
TCCATTTAGACAAGTGGTGG+AGG 0.513397 3:+91268112 None:intergenic
TTGTGTGACAGGACCAGAAT+TGG 0.513446 3:+91275339 None:intergenic
TTTGGCACGGGTGATTTCCA+TGG 0.514213 3:-91267524 MsaT015809.1:CDS
AATGGGCACAAGGGACTGGC+AGG 0.514534 3:-91268392 MsaT015809.1:CDS
GATCATAAACAACCATATGA+TGG 0.514783 3:-91275028 MsaT015809.1:CDS
TGATTTATATCAATTTCCTT+GGG 0.515469 3:-91266978 MsaT015809.1:CDS
TAACAGTTCTTCTGGACTAT+GGG 0.516224 3:+91269522 None:intergenic
AATTCAAAAGGCTTTGGCAC+GGG 0.518782 3:-91267536 MsaT015809.1:CDS
GGAACAATTAAGTTTGAATG+AGG 0.519133 3:-91275119 MsaT015809.1:CDS
AAGCTAATGATATGGGCAGT+TGG 0.520016 3:-91267697 MsaT015809.1:CDS
GTCACCGGTTTAGGTGGCAT+TGG 0.523450 3:-91268086 MsaT015809.1:CDS
TCCGTCCCATCTTCTTGGAA+AGG 0.524865 3:-91269659 MsaT015809.1:CDS
CTGAACCCCATTCTCAGTTG+TGG 0.525541 3:-91269184 MsaT015809.1:CDS
ATTGGGCTGCACGGTTTGGA+AGG 0.532088 3:-91269117 MsaT015809.1:intron
GACCTCTAAGAACCCAGGAC+TGG 0.539550 3:+91275219 None:intergenic
AAGCCAAATTCAAGAACCTC+GGG 0.541578 3:-91270590 MsaT015809.1:CDS
ACCAAAACAACACGCATACA+AGG 0.542431 3:-91271308 MsaT015809.1:CDS
CCAAGTTCACAAGATCCAAA+TGG 0.543852 3:-91268443 MsaT015809.1:CDS
AACGGTGATGATTGTGTGAC+AGG 0.544242 3:+91275328 None:intergenic
TTTGGGCAGGCTCATGTGAG+GGG 0.545911 3:-91267742 MsaT015809.1:intron
CTGTTTCAGAAGCGCATGAA+CGG 0.548045 3:-91277109 MsaT015809.1:CDS
TGTCTAAATGGATATGTCAC+CGG 0.549024 3:-91268101 MsaT015809.1:CDS
AGTCATCATGAATAATGAAA+CGG 0.549592 3:-91275185 MsaT015809.1:CDS
TGCATCTGCTGGAGCAGTGA+CGG 0.550109 3:-91268468 MsaT015809.1:CDS
TGATGACGAGCATGCACAGA+AGG 0.550115 3:+91267499 None:intergenic
GGATTCACTAAGAAATACCT+TGG 0.550666 3:-91268225 MsaT015809.1:CDS
TAAGAATGTTACCATGAGGC+TGG 0.551040 3:+91277325 None:intergenic
TGCGGCCAGCAATGGGCACA+AGG 0.551436 3:-91268402 MsaT015809.1:CDS
TTACTTCCTCAAGACACTGG+TGG 0.551472 3:-91270688 MsaT015809.1:CDS
TGTTTGGGCAGGCTCATGTG+AGG 0.551502 3:-91267744 MsaT015809.1:intron
TGCATTTCTGACAGCACCCA+AGG 0.555782 3:+91268208 None:intergenic
AACTTCGCCTCTGGAAACTA+CGG 0.556762 3:+91276408 None:intergenic
TTTCCCCTTAACCAGCCTCA+TGG 0.561765 3:-91277336 MsaT015809.1:intron
GGATATGTCACCGGTTTAGG+TGG 0.565101 3:-91268092 MsaT015809.1:CDS
CCTGAGACAACATCCATAGT+TGG 0.569426 3:-91275271 MsaT015809.1:CDS
CAATTCAAAAGGCTTTGGCA+CGG 0.569867 3:-91267537 MsaT015809.1:CDS
CTAAACTGCTACTATGCACA+TGG 0.570887 3:-91276440 MsaT015809.1:CDS
AGATCAATTACGATGCTACC+TGG 0.572627 3:-91278258 None:intergenic
CAGTCCATCCATTGATATCA+CGG 0.574632 3:+91269146 None:intergenic
ATGTGAGGGGTTACCAGACT+CGG 0.574934 3:-91267729 MsaT015809.1:CDS
GCATATTCAAGCTTGACTGT+TGG 0.580162 3:-91270565 MsaT015809.1:CDS
TTTCTGGATTGGGTTTCGAG+TGG 0.582020 3:-91269210 MsaT015809.1:CDS
AGCAACCTTTCCAAGAAGAT+GGG 0.582697 3:+91269654 None:intergenic
AGAATATTGTTATGCCAATG+AGG 0.584614 3:-91270506 MsaT015809.1:CDS
AATGAACGAGATGAAGATGC+AGG 0.584800 3:-91269274 MsaT015809.1:CDS
TCTTTGTCCAAGAAAGAGCA+AGG 0.586979 3:-91269247 MsaT015809.1:CDS
TGGACAAGGTTGTGCTAAGG+TGG 0.588436 3:-91267669 MsaT015809.1:CDS
TTACCATGAGGCTGGTTAAG+GGG 0.590627 3:+91277333 None:intergenic
CTTTGTCCAAGAAAGAGCAA+GGG 0.591267 3:-91269246 MsaT015809.1:CDS
TCTTGAAGCCAGTGATGATG+AGG 0.591725 3:-91268246 MsaT015809.1:CDS
TGGGATGCGTCGTCGAGCCG+AGG 0.592717 3:-91267461 MsaT015809.1:intron
TCTTCTTCAAGAGCTGCTGA+AGG 0.595191 3:-91269329 MsaT015809.1:CDS
ACCTTTCCAAGAAGATGGGA+CGG 0.596282 3:+91269658 None:intergenic
AAAGCCAAATTCAAGAACCT+CGG 0.596609 3:-91270591 MsaT015809.1:CDS
AACACGGTTATCAACTTCTG+TGG 0.597925 3:-91267044 MsaT015809.1:CDS
TTATGCCAATGAGGCAACAA+AGG 0.601144 3:-91270497 MsaT015809.1:intron
GATTCACTAAGAAATACCTT+GGG 0.601371 3:-91268224 MsaT015809.1:CDS
AAACCGTGCAGCCCAATGAA+GGG 0.601471 3:+91269123 None:intergenic
GACATATCCATTTAGACAAG+TGG 0.602811 3:+91268106 None:intergenic
TCATCTGTCATCCCTCACAT+TGG 0.603114 3:-91268342 MsaT015809.1:CDS
CAACTATGGATGTTGTCTCA+GGG 0.603209 3:+91275272 None:intergenic
ATTTCCGTGATATCAATGGA+TGG 0.609222 3:-91269150 MsaT015809.1:CDS
ACAAGGTTGTGCTAAGGTGG+CGG 0.609415 3:-91267666 MsaT015809.1:CDS
TGGACTCCACCAGTGTCTTG+AGG 0.610261 3:+91270682 None:intergenic
TAAAACTGCTGCATCTATTG+CGG 0.610279 3:-91268420 MsaT015809.1:CDS
ATATCCATTTAGACAAGTGG+TGG 0.614907 3:+91268109 None:intergenic
TCATGCTCATTATAAAAGGG+AGG 0.614946 3:+91275079 None:intergenic
ACATTCTTTCAGAAAACGGA+TGG 0.616326 3:-91268147 MsaT015809.1:CDS
ATTCTCTTACAGGCTGAACA+TGG 0.626364 3:-91267088 MsaT015809.1:intron
TCTTGGACAAGGTTGTGCTA+AGG 0.628079 3:-91267672 MsaT015809.1:CDS
GAAGGCTAGAGCGCTTCCCA+AGG 0.628496 3:+91266962 None:intergenic
AGCATGCACAGAAGGGACCA+TGG 0.630235 3:+91267507 None:intergenic
TATTCTTCAATAGAAACTCA+AGG 0.630493 3:-91270649 MsaT015809.1:CDS
GGCAGTTGGAATCTTGGACA+AGG 0.634216 3:-91267683 MsaT015809.1:CDS
TCATGCCACAACTGAGAATG+GGG 0.637586 3:+91269179 None:intergenic
GCGGCCAGCAATGGGCACAA+GGG 0.639651 3:-91268401 MsaT015809.1:CDS
GGATGGCGTAATCTGTTGTG+AGG 0.646267 3:-91269683 MsaT015809.1:CDS
CGAGTGATGAAATGGAAACA+CGG 0.646958 3:-91267060 MsaT015809.1:CDS
CTGCTACTATGCACATGGAG+AGG 0.651839 3:-91276435 MsaT015809.1:CDS
AGGAGAACCGTAGTTTCCAG+AGG 0.651888 3:-91276415 MsaT015809.1:CDS
AGCTGCTGAAGGATAAGCTG+CGG 0.660445 3:-91269318 MsaT015809.1:CDS
GATGACGAGCATGCACAGAA+GGG 0.661662 3:+91267500 None:intergenic
ATTCATGATGACTATATCCG+AGG 0.671055 3:+91275195 None:intergenic
AAGCTTGAATATGCATCCCG+AGG 0.674899 3:+91270574 None:intergenic
GAGGTGACCTCTAAGAACCC+AGG 0.676062 3:+91275214 None:intergenic
CCTTTATAATCGAAGCAGAG+AGG 0.688981 3:+91269473 None:intergenic
GCATTACAGAGAAACAAATG+AGG 0.696255 3:-91276012 MsaT015809.1:intron
AGGTGGCGGAGAAAACGGGT+TGG 0.696971 3:-91267652 MsaT015809.1:CDS
TGGGTTCTTAGAGGTCACCT+CGG 0.705452 3:-91275212 MsaT015809.1:CDS
GATGATAGCTCAGAATCTGG+AGG 0.706195 3:-91269451 MsaT015809.1:CDS
ATTGGCATAACAATATTCTG+GGG 0.709888 3:+91270510 None:intergenic
TGAGGGGTTACCAGACTCGG+AGG 0.712583 3:-91267726 MsaT015809.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 91266967 91278268 91266967 ID=MsaG015809
Chr3 mRNA 91266967 91278268 91266967 ID=MsaT015809.1;Parent=MsaG015809
Chr3 exon 91266967 91267098 91266967 ID=MsaT015809.1.exon13;Parent=MsaT015809.1
Chr3 CDS 91266967 91267098 91266967 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91267462 91267755 91267462 ID=MsaT015809.1.exon12;Parent=MsaT015809.1
Chr3 CDS 91267462 91267755 91267462 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91267965 91268523 91267965 ID=MsaT015809.1.exon11;Parent=MsaT015809.1
Chr3 CDS 91267965 91268523 91267965 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91269118 91269704 91269118 ID=MsaT015809.1.exon10;Parent=MsaT015809.1
Chr3 CDS 91269118 91269704 91269118 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91270498 91270718 91270498 ID=MsaT015809.1.exon9;Parent=MsaT015809.1
Chr3 CDS 91270498 91270718 91270498 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91270813 91270903 91270813 ID=MsaT015809.1.exon8;Parent=MsaT015809.1
Chr3 CDS 91270813 91270903 91270813 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91271297 91271448 91271297 ID=MsaT015809.1.exon7;Parent=MsaT015809.1
Chr3 CDS 91271297 91271448 91271297 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91275011 91275368 91275011 ID=MsaT015809.1.exon6;Parent=MsaT015809.1
Chr3 CDS 91275011 91275368 91275011 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91276013 91276058 91276013 ID=MsaT015809.1.exon5;Parent=MsaT015809.1
Chr3 CDS 91276013 91276058 91276013 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91276392 91276480 91276392 ID=MsaT015809.1.exon4;Parent=MsaT015809.1
Chr3 CDS 91276392 91276480 91276392 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91277103 91277218 91277103 ID=MsaT015809.1.exon3;Parent=MsaT015809.1
Chr3 CDS 91277103 91277218 91277103 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91277337 91277468 91277337 ID=MsaT015809.1.exon2;Parent=MsaT015809.1
Chr3 CDS 91277337 91277468 91277337 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Chr3 exon 91278259 91278268 91278259 ID=MsaT015809.1.exon1;Parent=MsaT015809.1
Chr3 CDS 91278259 91278268 91278259 ID=cds.MsaT015809.1;Parent=MsaT015809.1
Gene Sequence

>MsaT015809.1

ATGCTACCTGGTTTGCAATACAACATCAATGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAGCCTATAGAAGTGCTTTACATTTTGCAGAATCATGATACCTGCAAGTTCACCGATTTTCCCCTTAACCAGCCTCATGGTGGATCTTTGTATCTGTTTAATAGAAGAGTCATGCGTTTCTTTCGAAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTTTCAGAAGCGCATGAACGGCTTAAGGTTGGAAATGTTGAAGCTCTAAACTGCTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGAGGCGAAGTTATTGGATGTTGAACCCGGAATATGAGCATGTTGTTCTCGTGCATTACAGAGAAACAAATGAGGGGACATCCAATTCTGGTCCTGTCACACAATCATCACCGTTTAGTCAGAGTCGTAGCTCATATACTACTCCAAACCCTGAGACAACATCCATAGTTGGTGATTCATGTGAACCTAATCAGAATTTCTCCAGTCCTGGGTTCTTAGAGGTCACCTCGGATATAGTCATCATGAATAATGAAACGGATCACTTAGAGAAAACAAACGCACAAGCTCTGCGCCAATTGGAGGAACAATTAAGTTTGAATGAGGACAGCTTCACAGAAATTCCTCCCTTTTATAATGAGCATGAAATTCCTGTTGCATTCGCTGAACCAGATGATCATAAACAACCATATGATGGATATAATGGAACAAAAGATTGCAGTGGTAATCGTTATCATGAATTACTTGACCATGATTGCCCTGCTGGGCATGAAAAAACCTTATCTTGGACAGAGATGCTGGAATCATCCAAGTCCTCATTTGCAAACAAGTTACCAAAACAACACGCATACAAGGAATTTGAAAATGAAACGCCTCTATCTTCTTTTGGAAGAGAAATGATTGCCAACCAGGAAACCAGTTACCGGATACACCCCAACAGCAATAATGATGAGAACTCATACTTTTTACTTCCTCAAGACACTGGTGGAGTCCAATTTTCTCCATATTCTTCAATAGAAACTCAAGGAACTAATTCTGACTACTATGAAACATTATTTGACCAAAGCCAAATTCAAGAACCTCGGGATGCATATTCAAGCTTGACTGTTGGCCAGAAACAGAAATTTACAATTACAGCTGTCTCCCCAGAATATTGTTATGCCAATGAGGCAACAAAGGATGGCGTAATCTGTTGTGAGGCTCCGTCCCATCTTCTTGGAAAGGTTGCTCTGTGCATTACTTCAGGAAATAAGGAACCATGCAGTGAAATCAAAGAGTTTGAGTTTCAGAATAAGACCAATAGTTGCATTCACTGTAATGTTTTGGAAACAGAAGTTGCCCATAGTCCAGAAGAACTGTTATTACTTGTTCGATTTGCAGAAATGCTCCTCTCTGCTTCGATTATAAAGGATGATAGCTCAGAATCTGGAGGTCAATTTTCAACAGAACAGAAAGCAGATGATGATTCATGGAGCCATATTATAGATGCTCTCCTAGTTGGCAACGTAAATTCATCTGGTACTATTGATTGTCTTCTTCAAGAGCTGCTGAAGGATAAGCTGCGGCACTGGCTTTCTTGCAGATCCAATGAACGAGATGAAGATGCAGGTTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATACACATAGTTTCTGGATTGGGTTTCGAGTGGGCCCTGAACCCCATTCTCAGTTGTGGCATGAATGTTAATTTCCGTGATATCAATGGATGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATTGCTGCTGGTGCATCTGCTGGAGCAGTGACGGATCCAAGTTCACAAGATCCAAATGGTAAAACTGCTGCATCTATTGCGGCCAGCAATGGGCACAAGGGACTGGCAGGTTATCTTGCAGAAGTAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTCCTAAAGATTCTTCTGAGCTTGAAGCTGAGTTAACTGTCAGTAGTGTGTCTAAGAAAAATCTTGAAGCCAGTGATGATGAGGATTCACTAAGAAATACCTTGGGTGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGTATACAGGCTGCTTTCCGTGCACATTCTTTCAGAAAACGGATGGAGAGAGAAGCTGCCTCCACCACTTGTCTAAATGGATATGTCACCGGTTTAGGTGGCATTGGTGGATATGTTAGGAGCTCACGTGATTACAATTCAGCTGCCTTATCAATTCAGAAGAAATATAGAGGCTGGAAAGTTCGCAAAGAGTACTTAGCTTTTCGCCAAAAAGTTGTAACGATACAGGCTCATGTGAGGGGTTACCAGACTCGGAGGCAATACAAGCTAATGATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGGTGGCGGAGAAAACGGGTTGGTTTGCGAAGTTCTCCACAAGAAATAGATTCAAAAGAAGAAAGTGATGATGAAGATTTTCTCAAGGTGTTCAGGCAAGAAAAAGTACATGCAGCAATTCAAAAGGCTTTGGCACGGGTGATTTCCATGGTCCCTTCTGTGCATGCTCGTCATCAGTATAATCGCATGCTTGGGATGCGTCGTCGAGCCGAGGCTGAACATGGCAACACGAGTGATGAAATGGAAACACGGTTATCAACTTCTGTGGATGATGCTTGGAATATTGATGATGCTTGGAATGTTGAAGATGATGATTTATATCAATTTCCTTGGGAAGCGCTCTAG

Protein sequence

>MsaT015809.1

MLPGLQYNINDLFQEAKKRWLKPIEVLYILQNHDTCKFTDFPLNQPHGGSLYLFNRRVMRFFRKDGHNWRKKKDGRTVSEAHERLKVGNVEALNCYYAHGEENRSFQRRSYWMLNPEYEHVVLVHYRETNEGTSNSGPVTQSSPFSQSRSSYTTPNPETTSIVGDSCEPNQNFSSPGFLEVTSDIVIMNNETDHLEKTNAQALRQLEEQLSLNEDSFTEIPPFYNEHEIPVAFAEPDDHKQPYDGYNGTKDCSGNRYHELLDHDCPAGHEKTLSWTEMLESSKSSFANKLPKQHAYKEFENETPLSSFGREMIANQETSYRIHPNSNNDENSYFLLPQDTGGVQFSPYSSIETQGTNSDYYETLFDQSQIQEPRDAYSSLTVGQKQKFTITAVSPEYCYANEATKDGVICCEAPSHLLGKVALCITSGNKEPCSEIKEFEFQNKTNSCIHCNVLETEVAHSPEELLLLVRFAEMLLSASIIKDDSSESGGQFSTEQKADDDSWSHIIDALLVGNVNSSGTIDCLLQELLKDKLRHWLSCRSNERDEDAGCSLSKKEQGIIHIVSGLGFEWALNPILSCGMNVNFRDINGWTALHWAARFGREKMVASLIAAGASAGAVTDPSSQDPNGKTAASIAASNGHKGLAGYLAEVDLTSHLSSLTLEKCEVPKDSSELEAELTVSSVSKKNLEASDDEDSLRNTLGAVRNAAQAAARIQAAFRAHSFRKRMEREAASTTCLNGYVTGLGGIGGYVRSSRDYNSAALSIQKKYRGWKVRKEYLAFRQKVVTIQAHVRGYQTRRQYKLMIWAVGILDKVVLRWRRKRVGLRSSPQEIDSKEESDDEDFLKVFRQEKVHAAIQKALARVISMVPSVHARHQYNRMLGMRRRAEAEHGNTSDEMETRLSTSVDDAWNIDDAWNVEDDDLYQFPWEAL*