AlfalfaGEDB | MsaG015818

M. sativa ssp. caerulea / MsaG015818

KEGG: K09264
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015818	XP_024635953.1	100.000	246	0	0	1	246	1	246	0.0	509

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015818	sp\|O65874\|MTF1_PEA	93.173	249	12	4	1	246	1	247	1.71e-166	462

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015818	tr\|A0A396IX15\|A0A396IX15_MEDTR	100.000	246	0	0	1	246	1	246	0.0	509

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TFs/TRs:

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Gene ID	Type	Classification
MsaG015818	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG015818	MsaG019764	0.827863	2.210367e-54	6.021298e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015818	MtrunA17_Chr3g0122251	100.000	246	0	0	1	246	1	246	0.0	509
MsaG015818	MtrunA17_Chr6g0455511	65.759	257	68	6	1	245	1	249	2.07e-110	318
MsaG015818	MtrunA17_Chr7g0220111	64.314	255	74	6	1	245	1	248	4.09e-105	304
MsaG015818	MtrunA17_Chr8g0377551	80.000	185	31	5	63	246	1	180	7.95e-101	291
MsaG015818	MtrunA17_Chr5g0420091	58.036	224	82	3	1	221	1	215	1.35e-82	246
MsaG015818	MtrunA17_Chr8g0351051	50.584	257	108	7	1	245	1	250	2.35e-74	226
MsaG015818	MtrunA17_Chr4g0061671	62.500	176	61	1	1	176	1	171	7.45e-74	223
MsaG015818	MtrunA17_Chr4g0061691	58.046	174	64	2	1	171	1	168	2.77e-59	187
MsaG015818	MtrunA17_Chr8g0366231	55.556	171	73	1	1	171	1	168	2.42e-57	182
MsaG015818	MtrunA17_Chr6g0474371	51.087	184	82	2	1	181	1	179	3.09e-55	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015818	AT1G24260.2	75.403	248	56	4	1	246	1	245	2.61e-126	358
MsaG015818	AT1G24260.1	75.403	248	55	5	1	246	1	244	2.76e-124	353
MsaG015818	AT1G24260.3	72.874	247	50	4	1	246	1	231	2.05e-118	338
MsaG015818	AT3G02310.1	63.281	256	76	7	1	245	1	249	6.04e-100	291
MsaG015818	AT5G15800.1	61.479	257	80	6	1	245	1	250	1.61e-98	288
MsaG015818	AT5G15800.2	65.789	228	64	5	1	221	1	221	4.80e-96	282
MsaG015818	AT3G02310.2	80.117	171	31	2	1	171	1	168	3.21e-90	265
MsaG015818	AT2G03710.1	48.106	264	111	7	1	245	1	257	4.07e-73	224
MsaG015818	AT2G03710.2	48.289	263	111	7	1	245	1	256	4.08e-73	223
MsaG015818	AT2G03710.3	61.364	176	63	2	1	175	1	172	6.93e-70	213

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Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGAGCTCTTAGACAAA+GGG	0.529334	3:-91348362	MsaT015818.1:intron
AAAGATGGGAAGAGGAAGAG+TGG	0.480042	3:-91351483	None:intergenic
AACCTAATGGGAGAAGATCT+TGG	0.476280	3:-91348712	MsaT015818.1:CDS
AACGTTGGTTCGCACTCAAT+TGG	0.415713	3:+91348117	None:intergenic
AAGAGAAGAAAGATGGGAAG+AGG	0.486902	3:-91351491	None:intergenic
AAGATCTTGAAACACTTGAA+AGG	0.590834	3:-91348675	MsaT015818.1:CDS
AATCTCTACAACGCACTCAG+AGG	0.684339	3:-91348828	MsaT015818.1:intron
AATCTGAGTGCTGAAGATAT+GGG	0.638446	3:-91348192	MsaT015818.1:CDS
ACAGGAATACTTGAAGCTGA+AGG	0.654193	3:-91348860	MsaT015818.1:CDS
ACCGACCCGATTTGTAACGT+TGG	0.607060	3:+91348102	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	91347924	91351501	91347924	ID=MsaG015818
Chr3	mRNA	91347924	91351501	91347924	ID=MsaT015818.1;Parent=MsaG015818
Chr3	exon	91347924	91348002	91347924	ID=MsaT015818.1.exon8;Parent=MsaT015818.1
Chr3	CDS	91347924	91348002	91347924	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91348108	91348247	91348108	ID=MsaT015818.1.exon7;Parent=MsaT015818.1
Chr3	CDS	91348108	91348247	91348108	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91348363	91348404	91348363	ID=MsaT015818.1.exon6;Parent=MsaT015818.1
Chr3	CDS	91348363	91348404	91348363	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91348499	91348540	91348499	ID=MsaT015818.1.exon5;Parent=MsaT015818.1
Chr3	CDS	91348499	91348540	91348499	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91348636	91348735	91348636	ID=MsaT015818.1.exon4;Parent=MsaT015818.1
Chr3	CDS	91348636	91348735	91348636	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91348829	91348896	91348829	ID=MsaT015818.1.exon3;Parent=MsaT015818.1
Chr3	CDS	91348829	91348896	91348829	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91350004	91350088	91350004	ID=MsaT015818.1.exon2;Parent=MsaT015818.1
Chr3	CDS	91350004	91350088	91350004	ID=cds.MsaT015818.1;Parent=MsaT015818.1
Chr3	exon	91351317	91351501	91351317	ID=MsaT015818.1.exon1;Parent=MsaT015818.1
Chr3	CDS	91351317	91351501	91351317	ID=cds.MsaT015818.1;Parent=MsaT015818.1

Gene Sequence

>MsaT015818.1

ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCAAAACGAAGAAATGGTCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCAGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTCAAAACGCTTGAGAGGTATCAGAAATGCAACTATGGAGCACCTGAGGCTAATGCTCACTCAAAGGAAGCTTTGGTATTGGAATTAAGCAGCCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAATCTCTACAACGCACTCAGAGGAACCTAATGGGAGAAGATCTTGGCCCTCTAAGCAGTAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCCTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTAGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAGGCAAACAGAGCTCTTAGACAAAGGATGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGGCGTCATCATCCAGGTCAAAATCAGGGTGATCATGATGTATTTCAACCAATTGAGTGCGAACCAACGTTACAAATCGGATATCAGGCTGATCCAGGATCAGTGGTGGTGACAGCAGGCCCAAGCATGAATAACTACATGGGTGGATGGTTACCATGA

Protein sequence

>MsaT015818.1

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANAHSKEALVLELSSQQEYLKLKARYESLQRTQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHPGQNQGDHDVFQPIECEPTLQIGYQADPGSVVVTAGPSMNNYMGGWLP*