AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015834


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015834 MtrunA17_Chr3g0122071 90.598 117 11 0 55 171 106 222 4.28e-76 226
MsaG015834 MtrunA17_Chr4g0064011 58.757 177 60 7 3 174 64 232 9.01e-48 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015834 AT5G22990.1 53.012 83 39 0 62 144 232 314 4.42e-22 90.9
MsaG015834 AT2G15740.1 50.617 81 35 2 48 128 216 291 9.63e-19 82.0
MsaG015834 AT2G18490.1 53.521 71 32 1 51 121 144 213 3.83e-18 79.3
MsaG015834 AT2G18490.2 53.521 71 32 1 51 121 194 263 5.88e-18 79.7
MsaG015834 AT5G42640.1 52.113 71 29 2 55 121 218 287 1.04e-16 76.3

Find 18 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTACCTCACAAGAAATA+TGG 0.344617 3:+91481395 MsaT015834.1:CDS
AATATTTCTGTTGTTGATGT+TGG 0.374776 3:+91481296 MsaT015834.1:CDS
ATTTCTTGTGAGGTAGGCTA+TGG 0.375103 3:-91481391 None:intergenic
ATATTTCTGTTGTTGATGTT+GGG 0.376538 3:+91481297 MsaT015834.1:CDS
TATTAATATTAATTATTTGA+AGG 0.413280 3:-91481707 None:intergenic
TTATCAGCACAAGCAATAAC+AGG 0.430056 3:-91481602 None:intergenic
AGCAATGAAAATATTGATGA+TGG 0.472887 3:+91481362 MsaT015834.1:CDS
TCTCATCTTGATCTCCGTGT+AGG 0.496262 3:+91481233 MsaT015834.1:CDS
TATTTCTGTTGTTGATGTTG+GGG 0.503647 3:+91481298 MsaT015834.1:CDS
TTTCTTGTGAGGTAGGCTAT+GGG 0.526908 3:-91481390 None:intergenic
TATGGTCCATATTTCTTGTG+AGG 0.545765 3:-91481401 None:intergenic
GAAATATTAATCATTTGAGA+AGG 0.555913 3:-91481281 None:intergenic
CTCTCACCCCTCTTCCAAGT+GGG 0.558684 3:+91481666 MsaT015834.1:CDS
GTCCATATTTCTTGTGAGGT+AGG 0.562593 3:-91481397 None:intergenic
ATGTTAACAAGAACGATATG+AGG 0.578456 3:+91481321 MsaT015834.1:CDS
GCTCTCACCCCTCTTCCAAG+TGG 0.584935 3:+91481665 MsaT015834.1:CDS
CAGATTCAAAAGCTCAATGA+CGG 0.593887 3:+91481563 MsaT015834.1:CDS
ATTGTGATGATAAGCCTACA+CGG 0.769789 3:-91481247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 91481197 91481721 91481197 ID=MsaG015834
Chr3 mRNA 91481197 91481721 91481197 ID=MsaT015834.1;Parent=MsaG015834
Chr3 exon 91481197 91481721 91481197 ID=MsaT015834.1.exon1;Parent=MsaT015834.1
Chr3 CDS 91481197 91481721 91481197 ID=cds.MsaT015834.1;Parent=MsaT015834.1
Gene Sequence

>MsaT015834.1

ATGATGATGACGATGAATACTTCTGCTGCTGATTTTTCTCATCTTGATCTCCGTGTAGGCTTATCATCACAATCACAAGAACTGCCTTCTCAAATGATTAATATTTCTGTTGTTGATGTTGGGGATGTTAACAAGAACGATATGAGGAAGAAGAAGAAGAAGAAGAGCAATGAAAATATTGATGATGGAAGAACCCATAGCCTACCTCACAAGAAATATGGACCATACCCATGTTCAAAATGCAACAAAATATTTGAAACATCACAAAAATTTGCTAATCATGTTTCATCAAGTCACTACAAGTTCGAAAGTGAAGAAGACAGAAAAAAGAGATACATTTCTAGGATTCAGAAGAGACCGCGTCTTCAGATTCAAAAGCTCAATGACGGAACAACTACTTTTGTTCCTGTTATTGCTTGTGCTGATAAGTCACATGCTTCAGTCAATGATGATGATCATAATATGATTGCTCTCACCCCTCTTCCAAGTGGGATAAAAATCAAGTTGGAGCCTTCAAATAATTAA

Protein sequence

>MsaT015834.1

MMMTMNTSAADFSHLDLRVGLSSQSQELPSQMINISVVDVGDVNKNDMRKKKKKKSNENIDDGRTHSLPHKKYGPYPCSKCNKIFETSQKFANHVSSSHYKFESEEDRKKRYISRIQKRPRLQIQKLNDGTTTFVPVIACADKSHASVNDDDHNMIALTPLPSGIKIKLEPSNN*