AlfalfaGEDB | MsaG015842

M. sativa ssp. caerulea / MsaG015842

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015842	XP_024633575.1	73.256	258	55	3	1	246	1	256	6.28e-108	322

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015842	tr\|G7JBB9\|G7JBB9_MEDTR	75.391	256	23	4	1	243	1	229	1.66e-97	293

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG015842	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015842	MtrunA17_Chr3g0122071	73.047	256	22	4	1	243	1	222	6.46e-96	280
MsaG015842	MtrunA17_Chr4g0064011	56.855	248	89	8	1	246	1	232	1.53e-71	218
MsaG015842	MtrunA17_Chr6g0474091	45.113	133	60	6	1	133	1	120	1.91e-11	59.7

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG015842	AT2G18490.1	55.714	70	31	0	122	191	142	211	2.42e-20	87.4
MsaG015842	AT2G18490.2	55.714	70	31	0	122	191	192	261	3.21e-20	87.8
MsaG015842	AT2G15740.1	51.899	79	34	1	122	200	217	291	2.83e-19	85.5
MsaG015842	AT5G22990.1	50.602	83	40	1	135	216	232	314	2.23e-18	83.2
MsaG015842	AT5G42640.1	42.424	99	53	1	93	191	191	285	3.11e-18	82.4

Showing 1 to 5 of 5 entries

Previous1Next

Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTGGGATAAAAGTCAAGT+CGG	0.648453	3:+91596380	MsaT015842.1:CDS
ACAATCATAGATTGGTTCAA+TGG	0.452424	3:+91595683	MsaT015842.1:CDS
ACCAACTGATGATGATGAAT+GGG	0.541850	3:-91595725	None:intergenic
ACCCATTCATCATCATCAGT+TGG	0.590463	3:+91595724	MsaT015842.1:CDS
AGAGTCTTGAAGCACAATTT+GGG	0.488266	3:+91595794	MsaT015842.1:CDS
AGATTGGTTCAATGGATGCA+TGG	0.584866	3:+91595691	MsaT015842.1:CDS
AGCAATGAAAATATTGATGA+TGG	0.472887	3:+91596063	MsaT015842.1:CDS
AGCATGACTACCAAAATTAT+TGG	0.316188	3:-91595749	None:intergenic
AGCCTACCACACAAGAAATA+TGG	0.358104	3:+91596096	MsaT015842.1:CDS
ATGTTAACAAGAACGATACG+AGG	0.702248	3:+91596028	MsaT015842.1:CDS

Showing 1 to 10 of 29 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	91595679	91596425	91595679	ID=MsaG015842
Chr3	mRNA	91595679	91596425	91595679	ID=MsaT015842.1;Parent=MsaG015842
Chr3	exon	91595679	91596425	91595679	ID=MsaT015842.1.exon1;Parent=MsaT015842.1
Chr3	CDS	91595679	91596425	91595679	ID=cds.MsaT015842.1;Parent=MsaT015842.1

Gene Sequence

>MsaT015842.1

ATGAACAATCATAGATTGGTTCAATGGATGCATGGCTACAACACAACCCATTCATCATCATCAGTTGGTACCAATAATTTTGGTAGTCATGCTCCGGGAATCATAAAAGCGATGGAGAGTCTTGAAGCACAATTTGGGCATTTGCCTACATCAACATCGTCGTCGTCATCAATTAATATCAATATTAATGATGACATCATCATCAATAACAACAAGAACAACAACATGATGATGACAATGAATACTTCTCTTGCTGCTTCTTCACATCCTGATCTCCATGTAGGCTTATCATCACAATCACAAGAACTGTCTTCTCAAACGATTAATATTTTTGCTGGTGATGTTGAGGATGTTAACAAGAACGATACGAGGAAGAAGAAGAAGAGCAATGAAAATATTGATGATGGAAGAATCCACAGCCTACCACACAAGAAATATGGACCATATCCATGTTCAAAATGCAACAAAATATTTGAAACATCACAAAAATTTGCTAATCATGTTTCAAGTCACTACAAGTTCGAAAGTGAAGAAGACAGAAAAAAGAGATACATTTCTAGGATTCGAAAGAGACCGGGTCTTCAAATTCAAAAGCTCAATGACGGAACAACTACTTTTGTTCCTGTTATTGCTTGTGCTGATAAGTCACATGCTTCAGTCAATGATGATGATCATAATATGATTGCTCTCACCCCTCTTCCAAGTGGGATAAAAGTCAAGTCGGAGCCTTCAAATAATTATTATTAA

Protein sequence

>MsaT015842.1

MNNHRLVQWMHGYNTTHSSSSVGTNNFGSHAPGIIKAMESLEAQFGHLPTSTSSSSSINININDDIIINNNKNNNMMMTMNTSLAASSHPDLHVGLSSQSQELSSQTINIFAGDVEDVNKNDTRKKKKSNENIDDGRIHSLPHKKYGPYPCSKCNKIFETSQKFANHVSSHYKFESEEDRKKRYISRIRKRPGLQIQKLNDGTTTFVPVIACADKSHASVNDDDHNMIALTPLPSGIKVKSEPSNNYY*