AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015860 MtrunA17_Chr3g0122251 100.000 246 0 0 1 246 1 246 0.0 509
MsaG015860 MtrunA17_Chr6g0455511 65.759 257 68 6 1 245 1 249 2.07e-110 318
MsaG015860 MtrunA17_Chr7g0220111 64.314 255 74 6 1 245 1 248 4.09e-105 304
MsaG015860 MtrunA17_Chr8g0377551 80.000 185 31 5 63 246 1 180 7.95e-101 291
MsaG015860 MtrunA17_Chr5g0420091 58.036 224 82 3 1 221 1 215 1.35e-82 246
MsaG015860 MtrunA17_Chr8g0351051 50.584 257 108 7 1 245 1 250 2.35e-74 226
MsaG015860 MtrunA17_Chr4g0061671 62.500 176 61 1 1 176 1 171 7.45e-74 223
MsaG015860 MtrunA17_Chr4g0061691 58.046 174 64 2 1 171 1 168 2.77e-59 187
MsaG015860 MtrunA17_Chr8g0366231 55.556 171 73 1 1 171 1 168 2.42e-57 182
MsaG015860 MtrunA17_Chr6g0474371 51.087 184 82 2 1 181 1 179 3.09e-55 175
MsaG015860 MtrunA17_Chr7g0220121 46.939 196 99 2 1 196 1 191 1.58e-49 163
MsaG015860 MtrunA17_Chr5g0420081 50.000 176 85 2 1 176 1 173 4.36e-49 161
MsaG015860 MtrunA17_Chr1g0204111 46.927 179 84 3 1 175 17 188 1.04e-48 160
MsaG015860 MtrunA17_Chr8g0380021 41.518 224 126 3 1 223 17 236 3.62e-47 156
MsaG015860 MtrunA17_Chr2g0284911 46.591 176 88 3 1 175 16 186 2.07e-45 152
MsaG015860 MtrunA17_Chr3g0077501 47.191 178 84 3 1 175 1 171 3.92e-44 148
MsaG015860 MtrunA17_Chr4g0057151 48.876 178 73 4 1 171 1 167 4.39e-44 147
MsaG015860 MtrunA17_Chr3g0097101 48.315 178 82 4 1 175 16 186 2.19e-43 147
MsaG015860 MtrunA17_Chr8g0351031 44.944 178 95 2 1 178 1 175 2.49e-42 143
MsaG015860 MtrunA17_Chr7g0246431 47.953 171 85 3 1 171 1 167 4.96e-40 137
MsaG015860 MtrunA17_Chr8g0351041 46.250 160 83 2 1 160 1 157 8.37e-40 135
MsaG015860 MtrunA17_Chr2g0279821 42.703 185 101 2 1 185 1 180 4.57e-39 135
MsaG015860 MtrunA17_Chr5g0411691 40.323 186 105 2 1 186 1 180 3.76e-37 130
MsaG015860 MtrunA17_Chr8g0377561 96.721 61 2 0 1 61 1 61 1.38e-36 124
MsaG015860 MtrunA17_Chr4g0018421 41.520 171 98 1 1 171 1 169 3.95e-36 127
MsaG015860 MtrunA17_Chr4g0049541 42.373 177 95 3 1 176 1 171 4.17e-35 125
MsaG015860 MtrunA17_Chr1g0164791 39.535 172 103 1 1 171 1 172 1.43e-34 124
MsaG015860 MtrunA17_Chr4g0020221 42.614 176 99 2 1 176 1 174 2.42e-34 124
MsaG015860 MtrunA17_Chr7g0246381 82.090 67 12 0 1 67 1 67 9.14e-32 111
MsaG015860 MtrunA17_Chr3g0142191 41.615 161 86 2 1 161 1 153 2.36e-31 115
MsaG015860 MtrunA17_Chr3g0125241 39.326 178 95 5 1 175 26 193 4.29e-31 114
MsaG015860 MtrunA17_Chr2g0308251 68.000 75 24 0 1 75 1 75 1.85e-30 108
MsaG015860 MtrunA17_Chr5g0412271 40.678 177 101 3 1 177 1 173 4.05e-30 112
MsaG015860 MtrunA17_Chr5g0427401 37.073 205 107 5 1 192 1 196 1.58e-29 110
MsaG015860 MtrunA17_Chr1g0159661 35.567 194 101 5 1 186 1 178 2.20e-29 108
MsaG015860 MtrunA17_Chr5g0412461 38.587 184 95 3 1 177 1 173 4.92e-29 109
MsaG015860 MtrunA17_Chr4g0049901 38.547 179 94 4 1 172 27 196 8.34e-28 106
MsaG015860 MtrunA17_Chr5g0404951 40.260 154 81 3 1 150 1 147 8.38e-27 103
MsaG015860 MtrunA17_Chr1g0173161 69.565 69 21 0 1 69 1 69 1.01e-26 99.0
MsaG015860 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 1.60e-22 87.4
MsaG015860 MtrunA17_Chr3g0134451 60.000 70 28 0 1 70 1 70 3.42e-21 90.5
MsaG015860 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 9.15e-21 84.3
MsaG015860 MtrunA17_Chr5g0425191 66.667 57 19 0 1 57 1 57 1.79e-20 83.2
MsaG015860 MtrunA17_Chr2g0308271 36.806 144 82 2 55 195 26 163 3.23e-20 85.5
MsaG015860 MtrunA17_Chr1g0166611 80.000 45 9 0 16 60 20 64 2.72e-18 78.6
MsaG015860 MtrunA17_Chr3g0099421 44.330 97 51 1 2 95 34 130 3.65e-16 75.5
MsaG015860 MtrunA17_Chr2g0292791 58.929 56 23 0 2 57 9 64 8.77e-16 74.3
MsaG015860 MtrunA17_Chr1g0208581 57.143 56 24 0 2 57 9 64 2.70e-15 72.8
MsaG015860 MtrunA17_Chr1g0208561 47.826 69 35 1 2 70 9 76 4.84e-15 72.0
MsaG015860 MtrunA17_Chr3g0089141 55.357 56 25 0 2 57 9 64 5.20e-15 72.0
MsaG015860 MtrunA17_Chr8g0379021 55.357 56 25 0 2 57 12 67 7.15e-15 70.5
MsaG015860 MtrunA17_Chr1g0169761 40.816 98 53 1 1 93 1 98 7.75e-15 70.5
MsaG015860 MtrunA17_Chr8g0376821 54.386 57 26 0 1 57 1 57 1.09e-14 70.1
MsaG015860 MtrunA17_Chr2g0333981 56.140 57 25 0 1 57 11 67 1.10e-14 70.1
MsaG015860 MtrunA17_Chr8g0357771 52.632 57 27 0 1 57 1 57 1.25e-14 70.1
MsaG015860 MtrunA17_Chr2g0325971 53.571 56 26 0 2 57 9 64 1.48e-14 70.5
MsaG015860 MtrunA17_Chr8g0355091 41.237 97 54 1 2 95 9 105 1.88e-14 70.5
MsaG015860 MtrunA17_Chr3g0099411 41.237 97 54 1 2 95 9 105 2.08e-14 70.1
MsaG015860 MtrunA17_Chr1g0206721 41.237 97 54 1 2 95 9 105 2.10e-14 70.5
MsaG015860 MtrunA17_Chr1g0206701 55.357 56 25 0 2 57 9 64 4.44e-14 69.3
MsaG015860 MtrunA17_Chr1g0187361 47.826 69 35 1 2 70 9 76 4.48e-14 69.3
MsaG015860 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 4.69e-14 67.0
MsaG015860 MtrunA17_Chr1g0149391 55.357 56 25 0 2 57 9 64 5.93e-14 69.3
MsaG015860 MtrunA17_Chr1g0175611 52.632 57 27 0 1 57 1 57 6.32e-14 67.8
MsaG015860 MtrunA17_Chr4g0052061 47.541 61 32 0 1 61 1 61 9.92e-14 67.0
MsaG015860 MtrunA17_Chr1g0188671 55.357 56 25 0 2 57 47 102 9.98e-14 68.9
MsaG015860 MtrunA17_Chr5g0419601 54.386 57 26 0 1 57 8 64 1.24e-13 68.2
MsaG015860 MtrunA17_Chr1g0180591 50.877 57 28 0 1 57 1 57 1.61e-13 67.0
MsaG015860 MtrunA17_Chr4g0074101 50.877 57 28 0 1 57 1 57 1.96e-13 67.0
MsaG015860 MtrunA17_Chr1g0175601 52.632 57 27 0 1 57 1 57 2.31e-13 66.6
MsaG015860 MtrunA17_Chr2g0317451 46.377 69 36 1 2 70 9 76 2.61e-13 67.4
MsaG015860 MtrunA17_Chr2g0317481 46.377 69 36 1 2 70 9 76 2.64e-13 67.4
MsaG015860 MtrunA17_Chr1g0206991 39.175 97 56 1 2 95 9 105 5.47e-13 65.5
MsaG015860 MtrunA17_Chr5g0422941 53.571 56 26 0 2 57 9 64 7.46e-13 66.2
MsaG015860 MtrunA17_Chr5g0422421 53.571 56 26 0 2 57 9 64 8.16e-13 65.9
MsaG015860 MtrunA17_Chr2g0300421 51.786 56 27 0 2 57 9 64 1.07e-12 64.3
MsaG015860 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 1.84e-12 66.2
MsaG015860 MtrunA17_Chr4g0052081 45.763 59 32 0 1 59 1 59 2.25e-12 63.5
MsaG015860 MtrunA17_Chr4g0018951 42.105 95 33 3 16 106 26 102 2.64e-12 63.2
MsaG015860 MtrunA17_Chr2g0300441 40.449 89 47 3 2 88 7 91 5.46e-12 63.5
MsaG015860 MtrunA17_Chr7g0246401 32.061 131 74 5 126 245 2 128 9.27e-12 60.8
MsaG015860 MtrunA17_Chr3g0119901 47.368 57 30 0 1 57 8 64 1.06e-11 62.4
MsaG015860 MtrunA17_Chr8g0356071 47.368 57 30 0 1 57 1 57 1.10e-11 61.6
MsaG015860 MtrunA17_Chr3g0089151 48.214 56 29 0 2 57 9 64 1.76e-11 60.1
MsaG015860 MtrunA17_Chr3g0085241 47.368 57 30 0 1 57 40 96 2.26e-11 62.0
MsaG015860 MtrunA17_Chr3g0111841 50.000 54 27 0 8 61 2 55 9.25e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015860 AT1G24260.2 75.403 248 56 4 1 246 1 245 2.61e-126 358
MsaG015860 AT1G24260.1 75.403 248 55 5 1 246 1 244 2.76e-124 353
MsaG015860 AT1G24260.3 72.874 247 50 4 1 246 1 231 2.05e-118 338
MsaG015860 AT3G02310.1 63.281 256 76 7 1 245 1 249 6.04e-100 291
MsaG015860 AT5G15800.1 61.479 257 80 6 1 245 1 250 1.61e-98 288
MsaG015860 AT5G15800.2 65.789 228 64 5 1 221 1 221 4.80e-96 282
MsaG015860 AT3G02310.2 80.117 171 31 2 1 171 1 168 3.21e-90 265
MsaG015860 AT2G03710.1 48.106 264 111 7 1 245 1 257 4.07e-73 224
MsaG015860 AT2G03710.2 48.289 263 111 7 1 245 1 256 4.08e-73 223
MsaG015860 AT2G03710.3 61.364 176 63 2 1 175 1 172 6.93e-70 213
MsaG015860 AT2G45650.1 47.082 257 118 8 1 245 1 251 2.60e-65 203
MsaG015860 AT1G26310.1 43.939 264 117 7 1 244 1 253 2.60e-58 186
MsaG015860 AT1G69120.2 51.381 181 75 2 1 176 1 173 3.39e-57 182
MsaG015860 AT1G69120.1 51.381 181 75 2 1 176 1 173 2.70e-56 181
MsaG015860 AT5G60910.1 52.514 179 76 2 1 176 1 173 6.79e-55 176
MsaG015860 AT3G61120.1 52.717 184 81 2 1 184 1 178 1.24e-54 176
MsaG015860 AT4G18960.1 46.561 189 91 3 2 187 18 199 3.93e-47 157
MsaG015860 AT4G09960.1 46.486 185 86 4 1 179 1 178 2.59e-46 154
MsaG015860 AT4G09960.6 46.486 185 86 4 1 179 2 179 2.81e-46 154
MsaG015860 AT4G09960.5 46.486 185 86 4 1 179 11 188 3.70e-46 154
MsaG015860 AT4G09960.3 46.486 185 86 4 1 179 27 204 1.56e-45 153
MsaG015860 AT4G09960.4 48.447 161 77 3 1 160 96 251 2.61e-43 149
MsaG015860 AT3G30260.1 50.633 158 69 2 1 155 1 152 2.74e-43 147
MsaG015860 AT3G58780.5 45.213 188 92 5 1 184 22 202 3.80e-43 147
MsaG015860 AT3G58780.1 45.213 188 92 5 1 184 16 196 3.84e-43 147
MsaG015860 AT4G09960.2 51.007 149 63 3 1 146 1 142 4.76e-43 145
MsaG015860 AT4G11880.2 49.123 171 69 3 1 165 1 159 2.10e-42 142
MsaG015860 AT4G11880.3 49.123 171 69 3 1 165 1 159 2.10e-42 142
MsaG015860 AT2G42830.1 44.199 181 85 3 1 175 16 186 6.54e-42 143
MsaG015860 AT2G45660.1 42.079 202 98 5 1 195 1 190 1.68e-41 141
MsaG015860 AT4G11880.4 51.282 156 60 2 1 150 1 146 4.52e-41 140
MsaG015860 AT4G11880.1 51.282 156 60 2 1 150 1 146 4.52e-41 140
MsaG015860 AT4G22950.2 45.810 179 86 4 1 176 1 171 7.50e-41 138
MsaG015860 AT4G22950.3 46.111 180 86 4 1 177 1 172 1.95e-40 139
MsaG015860 AT4G22950.1 46.111 180 86 4 1 177 1 172 1.95e-40 139
MsaG015860 AT2G42830.2 44.262 183 84 4 1 175 16 188 2.16e-40 139
MsaG015860 AT5G62165.3 45.402 174 91 3 1 174 1 170 3.47e-40 138
MsaG015860 AT5G62165.1 45.402 174 91 3 1 174 1 170 3.47e-40 138
MsaG015860 AT5G62165.2 45.402 174 91 3 1 174 1 170 3.47e-40 138
MsaG015860 AT3G58780.2 43.617 188 88 5 1 184 16 189 3.85e-40 139
MsaG015860 AT3G58780.3 36.398 261 123 8 1 226 16 268 2.31e-39 137
MsaG015860 AT2G45660.2 45.509 167 73 4 1 160 1 156 2.75e-39 134
MsaG015860 AT3G58780.4 49.351 154 68 4 1 151 16 162 7.58e-39 136
MsaG015860 AT3G57230.1 42.286 175 96 2 1 175 1 170 1.89e-38 134
MsaG015860 AT3G57230.4 42.286 175 96 2 1 175 1 170 1.89e-38 134
MsaG015860 AT5G62165.17 45.625 160 83 3 1 160 1 156 5.53e-38 130
MsaG015860 AT5G62165.12 45.625 160 83 3 1 160 1 156 5.53e-38 130
MsaG015860 AT5G62165.11 45.625 160 83 3 1 160 1 156 5.53e-38 130
MsaG015860 AT2G14210.1 36.017 236 134 3 1 223 1 232 1.94e-37 131
MsaG015860 AT2G14210.2 42.442 172 95 1 1 172 1 168 4.25e-37 130
MsaG015860 AT5G62165.10 40.816 196 109 5 1 195 1 190 7.22e-37 129
MsaG015860 AT5G62165.4 40.816 196 109 5 1 195 1 190 7.22e-37 129
MsaG015860 AT5G62165.6 45.333 150 78 3 1 150 1 146 3.09e-36 126
MsaG015860 AT5G62165.9 45.333 150 78 3 1 150 1 146 3.09e-36 126
MsaG015860 AT5G62165.7 45.333 150 78 3 1 150 1 146 3.09e-36 126
MsaG015860 AT5G62165.8 45.333 150 78 3 1 150 1 146 3.09e-36 126
MsaG015860 AT5G62165.13 45.333 150 78 3 1 150 1 146 3.09e-36 126
MsaG015860 AT3G57390.3 41.667 180 100 2 1 176 1 179 3.67e-36 128
MsaG015860 AT3G57390.1 41.667 180 100 2 1 176 1 179 9.16e-36 128
MsaG015860 AT3G57230.2 47.552 143 70 2 1 143 1 138 1.89e-35 124
MsaG015860 AT4G37940.1 39.344 183 92 3 1 176 1 171 2.91e-35 125
MsaG015860 AT2G22630.1 40.909 176 99 2 1 176 1 171 3.66e-35 125
MsaG015860 AT2G22630.2 40.909 176 99 2 1 176 1 171 3.66e-35 125
MsaG015860 AT5G13790.1 43.182 176 89 3 1 176 1 165 9.31e-35 125
MsaG015860 AT5G13790.2 44.318 176 90 3 1 176 1 168 1.12e-34 125
MsaG015860 AT5G51870.1 36.937 222 118 4 1 221 1 201 1.58e-33 120
MsaG015860 AT1G71692.1 37.879 198 119 2 1 194 1 198 2.77e-33 120
MsaG015860 AT2G22540.3 38.506 174 103 2 1 174 1 170 2.98e-33 120
MsaG015860 AT2G22540.1 38.506 174 103 2 1 174 1 170 2.98e-33 120
MsaG015860 AT4G37940.4 40.936 171 96 2 1 171 1 166 5.28e-33 119
MsaG015860 AT5G51860.2 41.463 164 93 2 1 164 1 161 1.48e-32 118
MsaG015860 AT5G51870.3 41.954 174 97 3 1 173 11 181 1.53e-32 119
MsaG015860 AT5G51870.4 41.954 174 97 3 1 173 1 171 1.69e-32 118
MsaG015860 AT5G51860.1 41.463 164 93 2 1 164 1 161 1.80e-32 118
MsaG015860 AT5G10140.4 41.875 160 82 1 1 160 1 149 1.88e-32 117
MsaG015860 AT5G23260.2 42.012 169 91 4 1 168 1 163 2.15e-32 119
MsaG015860 AT5G23260.4 42.012 169 91 4 1 168 17 179 3.38e-32 119
MsaG015860 AT5G10140.1 42.045 176 91 1 1 176 1 165 3.85e-32 117
MsaG015860 AT5G20240.1 35.556 225 113 7 1 219 1 199 5.26e-32 117
MsaG015860 AT4G37940.3 44.755 143 74 2 1 143 1 138 6.04e-32 115
MsaG015860 AT5G65050.2 40.698 172 89 3 1 171 1 160 6.28e-32 115
MsaG015860 AT5G65050.3 40.698 172 89 3 1 171 1 160 9.64e-32 115
MsaG015860 AT5G10140.2 43.046 151 75 1 1 151 1 140 1.32e-31 114
MsaG015860 AT5G10140.3 43.046 151 75 1 1 151 1 140 3.19e-31 114
MsaG015860 AT5G65060.3 38.953 172 92 3 1 171 1 160 7.22e-31 113
MsaG015860 AT5G65060.1 38.953 172 92 3 1 171 1 160 7.24e-31 113
MsaG015860 AT5G62165.14 59.783 92 32 2 1 88 1 91 2.23e-30 109
MsaG015860 AT5G65050.5 39.535 172 80 3 1 171 1 149 3.47e-30 111
MsaG015860 AT5G51870.2 42.568 148 82 2 1 148 1 145 4.51e-30 110
MsaG015860 AT5G51870.5 42.568 148 82 2 1 148 24 168 1.29e-29 110
MsaG015860 AT5G20240.2 42.568 148 68 4 1 143 1 136 1.41e-29 108
MsaG015860 AT5G65050.1 38.636 176 91 4 1 171 1 164 1.82e-29 109
MsaG015860 AT5G23260.1 41.420 169 87 5 1 168 17 174 4.00e-29 110
MsaG015860 AT5G65080.3 42.500 160 81 3 1 160 8 156 4.80e-29 108
MsaG015860 AT5G65060.2 37.791 172 83 3 1 171 1 149 6.93e-29 108
MsaG015860 AT5G65070.1 38.220 191 105 3 1 191 1 178 9.14e-29 108
MsaG015860 AT5G23260.3 39.264 163 92 4 1 162 1 157 5.27e-28 107
MsaG015860 AT2G22540.2 35.057 174 104 2 1 174 1 165 1.16e-27 106
MsaG015860 AT4G24540.1 33.628 226 134 5 1 221 1 215 4.99e-27 104
MsaG015860 AT5G65070.2 35.071 211 115 4 1 191 1 209 1.76e-26 103
MsaG015860 AT1G31140.1 42.405 158 72 5 1 150 1 147 7.32e-26 100
MsaG015860 AT1G31140.2 41.250 160 73 5 1 150 1 149 1.09e-25 100
MsaG015860 AT1G77080.4 39.205 176 94 3 1 175 1 164 2.95e-25 99.0
MsaG015860 AT3G54340.1 32.558 215 109 5 1 207 1 187 3.63e-25 99.8
MsaG015860 AT1G77080.11 38.251 183 100 3 1 182 1 171 6.34e-25 97.4
MsaG015860 AT1G77080.5 39.535 172 91 3 1 171 1 160 1.66e-24 96.3
MsaG015860 AT5G65070.4 61.972 71 27 0 1 71 1 71 6.05e-24 94.0
MsaG015860 AT5G65070.5 61.972 71 27 0 1 71 1 71 2.17e-23 94.4
MsaG015860 AT5G65080.2 37.342 158 87 2 1 158 8 153 6.69e-23 92.8
MsaG015860 AT5G65070.3 33.180 217 112 6 1 191 1 210 2.91e-22 92.0
MsaG015860 AT1G77080.8 34.500 200 97 4 1 175 1 191 6.19e-22 90.9
MsaG015860 AT1G77080.2 35.429 175 98 1 1 175 1 160 1.59e-20 86.3
MsaG015860 AT1G77980.1 55.714 70 31 0 1 70 1 70 2.34e-20 88.6
MsaG015860 AT1G22130.1 55.714 70 31 0 1 70 1 70 3.01e-20 88.6
MsaG015860 AT1G69120.3 38.136 118 60 2 63 175 1 110 4.92e-18 79.7
MsaG015860 AT1G77950.3 52.857 70 33 0 1 70 1 70 1.13e-17 80.1
MsaG015860 AT1G77950.2 52.857 70 33 0 1 70 1 70 1.13e-17 80.1
MsaG015860 AT1G77950.1 52.857 70 33 0 1 70 1 70 1.13e-17 80.1
MsaG015860 AT1G77950.4 52.857 70 33 0 1 70 1 70 1.13e-17 80.1
MsaG015860 AT1G77080.12 34.375 160 90 1 1 160 1 145 5.65e-17 75.9
MsaG015860 AT4G37435.1 59.649 57 23 0 1 57 1 57 2.80e-16 74.7
MsaG015860 AT5G60910.2 38.462 117 63 2 63 176 1 111 3.60e-16 74.3
MsaG015860 AT1G01530.1 57.895 57 24 0 1 57 6 62 2.46e-15 73.6
MsaG015860 AT2G03060.3 47.297 74 38 1 1 73 1 74 3.19e-15 74.7
MsaG015860 AT2G03060.7 47.297 74 38 1 1 73 1 74 3.19e-15 74.7
MsaG015860 AT2G03060.1 47.297 74 38 1 1 73 1 74 3.19e-15 74.7
MsaG015860 AT2G03060.2 47.297 74 38 1 1 73 1 74 3.69e-15 74.3
MsaG015860 AT4G36590.1 32.716 162 84 4 2 143 7 163 1.11e-14 71.6
MsaG015860 AT1G18750.4 52.632 57 27 0 1 57 1 57 3.16e-14 71.6
MsaG015860 AT1G18750.1 52.632 57 27 0 1 57 1 57 3.55e-14 71.6
MsaG015860 AT1G18750.3 52.632 57 27 0 1 57 1 57 4.47e-14 71.2
MsaG015860 AT1G72350.1 49.206 63 32 0 2 64 43 105 9.58e-14 68.6
MsaG015860 AT1G65360.1 33.333 114 75 1 1 114 6 118 9.67e-14 68.9
MsaG015860 AT3G66656.1 49.123 57 29 0 1 57 1 57 1.29e-12 64.7
MsaG015860 AT5G60440.1 53.571 56 26 0 2 57 7 62 1.83e-12 66.2
MsaG015860 AT2G24840.1 30.488 164 98 3 1 149 62 224 2.27e-12 65.5
MsaG015860 AT2G34440.1 47.368 57 30 0 1 57 1 57 2.30e-12 63.9
MsaG015860 AT1G69540.1 26.667 270 149 12 1 242 1 249 4.29e-12 65.5
MsaG015860 AT3G04100.1 38.961 77 46 1 2 78 14 89 5.31e-12 63.5
MsaG015860 AT1G69540.2 26.667 270 149 12 1 242 1 249 5.47e-12 65.1
MsaG015860 AT1G47760.1 53.061 49 23 0 1 49 1 49 1.59e-11 62.0
MsaG015860 AT4G18960.3 27.326 172 110 4 54 221 55 215 2.43e-11 62.4
MsaG015860 AT4G18960.2 27.326 172 110 4 54 221 55 215 2.43e-11 62.4
MsaG015860 AT4G18960.4 30.000 130 82 2 54 180 55 178 5.11e-11 60.5
MsaG015860 AT1G29962.1 50.000 60 30 0 2 61 8 67 5.81e-11 60.5

Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGCTTATGCAGATATC+AGG 0.292514 3:+91755774 MsaT015860.1:intron
TCAAGATCTTTACTGCTTAG+AGG 0.314850 3:-91755081 None:intergenic
TGTGGATCTGATTTGCTTCA+AGG 0.316708 3:-91755130 None:intergenic
GAATCTGAGTGCTGAAGATA+TGG 0.338691 3:+91755576 MsaT015860.1:CDS
AGTGCTGAAGATATGGGATA+TGG 0.360357 3:+91755583 MsaT015860.1:CDS
CTAGCTGATCCAGCATGAAT+TGG 0.361524 3:-91755253 None:intergenic
TGCTCACTCAAAGGAAGCTT+TGG 0.364390 3:+91753760 MsaT015860.1:CDS
CCCATGTAGTTATTCATGCT+TGG 0.364997 3:-91755829 None:intergenic
CCATGTAGTTATTCATGCTT+GGG 0.382911 3:-91755828 None:intergenic
TCATCATCCAGGTCAAAATC+AGG 0.389043 3:+91755609 MsaT015860.1:CDS
GCTGTCACCACCACTGATCC+TGG 0.399437 3:-91755802 None:intergenic
GGCCAAGATCTTCTCCCATT+AGG 0.418705 3:-91755059 None:intergenic
CTTGTACATTAGGAACCTAA+TGG 0.419408 3:+91755044 MsaT015860.1:intron
ACCTTTGCAAAACGAAGAAA+TGG 0.432131 3:+91752350 MsaT015860.1:CDS
AGGTATCAGAAATGCAACTA+TGG 0.438111 3:+91753722 MsaT015860.1:CDS
AACGTTGGTTCGCACTCGAT+TGG 0.443300 3:-91755652 None:intergenic
CTCAAAGGAAGCTTTGGTAT+TGG 0.446907 3:+91753766 MsaT015860.1:CDS
TGCGAACCAACGTTACAAAT+CGG 0.451181 3:+91755661 MsaT015860.1:CDS
GGATCAGTGGTGGTGACAGC+AGG 0.464006 3:+91755805 MsaT015860.1:CDS
CAAACAGAGCTCTTAGACAA+AGG 0.465432 3:+91755406 MsaT015860.1:CDS
AACCTAATGGGAGAAGATCT+TGG 0.476280 3:+91755057 MsaT015860.1:CDS
GCAGGAATTAAGCAGCCAAC+AGG 0.478215 3:+91754891 MsaT015860.1:intron
TGCAGATATCAGGCTGATCC+AGG 0.479365 3:+91755784 MsaT015860.1:intron
AAAGATGGGAAGAGGAAGAG+TGG 0.480042 3:+91752289 None:intergenic
TTTGAGTGAGCATTAGCCTC+AGG 0.480988 3:-91753749 None:intergenic
AAGAGAAGAAAGATGGGAAG+AGG 0.486902 3:+91752281 None:intergenic
CAAGATCTTTACTGCTTAGA+GGG 0.491913 3:-91755080 None:intergenic
TTCTGTTCTTTGTGATGCAG+AGG 0.493852 3:+91752397 MsaT015860.1:CDS
TAGCTGATCCAGCATGAATT+GGG 0.496848 3:-91755252 None:intergenic
CTCATCGTCTTCTCCAATAG+AGG 0.497888 3:+91752425 MsaT015860.1:CDS
TTGTACATTAGGAACCTAAT+GGG 0.498132 3:+91755045 MsaT015860.1:intron
GCGAACCAACGTTACAAATC+GGG 0.513223 3:+91755662 MsaT015860.1:CDS
CCCAAGCATGAATAACTACA+TGG 0.518064 3:+91755828 MsaT015860.1:CDS
TCAGCTTCAAGTATTCCTGT+TGG 0.519289 3:-91754906 None:intergenic
CTTCAGCACTCAGATTCAGT+TGG 0.523222 3:-91755570 None:intergenic
TCTATAGACCCAATTCATGC+TGG 0.526193 3:+91755244 MsaT015860.1:intron
GGATATGGGCGTCATCATCC+AGG 0.528249 3:+91755598 MsaT015860.1:CDS
AAACAGAGCTCTTAGACAAA+GGG 0.529334 3:+91755407 MsaT015860.1:CDS
GCTAGGTGATCTTCAACGTA+AGG 0.552185 3:+91755271 MsaT015860.1:CDS
TGAATAACTACATGGGTGGA+TGG 0.580988 3:+91755836 MsaT015860.1:CDS
CAATTCATGCTGGATCAGCT+AGG 0.586915 3:+91755254 MsaT015860.1:CDS
AAGATCTTGAAACACTTGAA+AGG 0.590834 3:+91755094 MsaT015860.1:CDS
TGAGGCTAATGCTCACTCAA+AGG 0.602089 3:+91753751 MsaT015860.1:CDS
ACCGACCCGATTTGTAACGT+TGG 0.607060 3:-91755667 None:intergenic
GCATGCTCAAAACGCTTGAG+AGG 0.610774 3:+91753702 MsaT015860.1:intron
GTGCTGAAGATATGGGATAT+GGG 0.612448 3:+91755584 MsaT015860.1:CDS
TGTAAAGTTGAGTACCCTTG+TGG 0.614190 3:-91755148 None:intergenic
CATCATCCAGGTCAAAATCA+GGG 0.621739 3:+91755610 MsaT015860.1:CDS
AGCATGAATAACTACATGGG+TGG 0.631983 3:+91755832 MsaT015860.1:CDS
TCAGGCTGATCCAGGATCAG+TGG 0.632515 3:+91755792 MsaT015860.1:CDS
AATCTGAGTGCTGAAGATAT+GGG 0.638446 3:+91755577 MsaT015860.1:CDS
GGCTGATCCAGGATCAGTGG+TGG 0.652694 3:+91755795 MsaT015860.1:CDS
ATGCAACTATGGAGCACCTG+AGG 0.652818 3:+91753733 MsaT015860.1:CDS
ACAGGAATACTTGAAGCTGA+AGG 0.654193 3:+91754909 MsaT015860.1:CDS
GGATCTGATTTGCTTCAAGG+AGG 0.671453 3:-91755127 None:intergenic
CCAAGCATGAATAACTACAT+GGG 0.681040 3:+91755829 MsaT015860.1:CDS
AATCTCTACAACGCACTCAG+AGG 0.684339 3:+91754941 MsaT015860.1:CDS
TGAAGCAAATCAGATCCACA+AGG 0.704252 3:+91755133 MsaT015860.1:CDS
GAAGCAAATCAGATCCACAA+GGG 0.737410 3:+91755134 MsaT015860.1:CDS
GAAGGAACACTTGCTATGTG+AGG 0.772195 3:+91755383 MsaT015860.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 91752293 91755867 91752293 ID=MsaG015860
Chr3 mRNA 91752293 91755867 91752293 ID=MsaT015860.1;Parent=MsaG015860
Chr3 exon 91752293 91752477 91752293 ID=MsaT015860.1.exon1;Parent=MsaT015860.1
Chr3 CDS 91752293 91752477 91752293 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91753703 91753787 91753703 ID=MsaT015860.1.exon2;Parent=MsaT015860.1
Chr3 CDS 91753703 91753787 91753703 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91754895 91754962 91754895 ID=MsaT015860.1.exon3;Parent=MsaT015860.1
Chr3 CDS 91754895 91754962 91754895 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91755056 91755155 91755056 ID=MsaT015860.1.exon4;Parent=MsaT015860.1
Chr3 CDS 91755056 91755155 91755056 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91755251 91755292 91755251 ID=MsaT015860.1.exon5;Parent=MsaT015860.1
Chr3 CDS 91755251 91755292 91755251 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91755387 91755428 91755387 ID=MsaT015860.1.exon6;Parent=MsaT015860.1
Chr3 CDS 91755387 91755428 91755387 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91755544 91755683 91755544 ID=MsaT015860.1.exon7;Parent=MsaT015860.1
Chr3 CDS 91755544 91755683 91755544 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Chr3 exon 91755789 91755867 91755789 ID=MsaT015860.1.exon8;Parent=MsaT015860.1
Chr3 CDS 91755789 91755867 91755789 ID=cds.MsaT015860.1;Parent=MsaT015860.1
Gene Sequence

>MsaT015860.1

ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCAAAACGAAGAAATGGTCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCAGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTCAAAACGCTTGAGAGGTATCAGAAATGCAACTATGGAGCACCTGAGGCTAATGCTCACTCAAAGGAAGCTTTGGTATTGGAATTAAGCAGCCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAATCTCTACAACGCACTCAGAGGAACCTAATGGGAGAAGATCTTGGCCCTCTAAGCAGTAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCCTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTAGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAGGCAAACAGAGCTCTTAGACAAAGGATGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGGCGTCATCATCCAGGTCAAAATCAGGGTGATCATGATGTATTTCAACCAATCGAGTGCGAACCAACGTTACAAATCGGATATCAGGCTGATCCAGGATCAGTGGTGGTGACAGCAGGCCCAAGCATGAATAACTACATGGGTGGATGGTTACCATGA
Protein sequence

>MsaT015860.1

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANAHSKEALVLELSSQQEYLKLKARYESLQRTQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHPGQNQGDHDVFQPIECEPTLQIGYQADPGSVVVTAGPSMNNYMGGWLP*