Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015872 | XP_003601767.2 | 96.313 | 434 | 16 | 0 | 1 | 434 | 1 | 434 | 0.0 | 811 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015872 | sp|A2YGR5|SPL12_ORYSI | 43.333 | 300 | 142 | 6 | 94 | 366 | 106 | 404 | 2.17e-64 | 217 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015872 | tr|G7JBG3|G7JBG3_MEDTR | 96.313 | 434 | 16 | 0 | 1 | 434 | 1 | 434 | 0.0 | 811 |
Gene ID | Type | Classification |
---|---|---|
MsaG015872 | TF | SBP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015872 | MtrunA17_Chr3g0122411 | 96.313 | 434 | 16 | 0 | 1 | 434 | 1 | 434 | 0.0 | 811 |
MsaG015872 | MtrunA17_Chr8g0377421 | 48.308 | 325 | 123 | 4 | 10 | 327 | 11 | 297 | 1.83e-86 | 266 |
MsaG015872 | MtrunA17_Chr8g0377401 | 54.251 | 247 | 90 | 5 | 1 | 237 | 1 | 234 | 8.00e-67 | 214 |
MsaG015872 | MtrunA17_Chr8g0377431 | 48.113 | 212 | 89 | 5 | 10 | 218 | 11 | 204 | 4.16e-47 | 161 |
MsaG015872 | MtrunA17_Chr5g0420051 | 41.827 | 208 | 112 | 4 | 39 | 240 | 52 | 256 | 3.08e-40 | 149 |
MsaG015872 | MtrunA17_Chr7g0258471 | 37.545 | 277 | 126 | 7 | 120 | 374 | 91 | 342 | 1.85e-39 | 146 |
MsaG015872 | MtrunA17_Chr7g0231911 | 47.826 | 161 | 80 | 3 | 93 | 249 | 73 | 233 | 8.11e-38 | 139 |
MsaG015872 | MtrunA17_Chr8g0360361 | 70.000 | 80 | 24 | 0 | 163 | 242 | 63 | 142 | 4.22e-36 | 131 |
MsaG015872 | MtrunA17_Chr3g0132091 | 49.606 | 127 | 61 | 3 | 151 | 276 | 58 | 182 | 1.06e-35 | 134 |
MsaG015872 | MtrunA17_Chr4g0061651 | 51.562 | 128 | 55 | 2 | 117 | 240 | 74 | 198 | 3.72e-35 | 135 |
MsaG015872 | MtrunA17_Chr4g0046991 | 55.963 | 109 | 32 | 1 | 130 | 238 | 54 | 146 | 9.19e-35 | 126 |
MsaG015872 | MtrunA17_Chr8g0334671 | 47.500 | 160 | 63 | 4 | 118 | 266 | 147 | 296 | 3.66e-34 | 130 |
MsaG015872 | MtrunA17_Chr7g0224821 | 59.341 | 91 | 34 | 1 | 154 | 244 | 69 | 156 | 8.54e-33 | 127 |
MsaG015872 | MtrunA17_Chr8g0386271 | 56.311 | 103 | 42 | 2 | 164 | 266 | 98 | 197 | 1.52e-32 | 127 |
MsaG015872 | MtrunA17_Chr2g0282521 | 57.895 | 95 | 39 | 1 | 148 | 242 | 48 | 141 | 3.88e-32 | 119 |
MsaG015872 | MtrunA17_Chr2g0308321 | 60.000 | 90 | 36 | 0 | 151 | 240 | 157 | 246 | 6.30e-31 | 124 |
MsaG015872 | MtrunA17_Chr1g0194121 | 56.842 | 95 | 41 | 0 | 150 | 244 | 132 | 226 | 2.73e-29 | 121 |
MsaG015872 | MtrunA17_Chr2g0302791 | 47.934 | 121 | 55 | 2 | 134 | 247 | 102 | 221 | 8.67e-29 | 119 |
MsaG015872 | MtrunA17_Chr1g0162871 | 58.621 | 87 | 36 | 0 | 163 | 249 | 102 | 188 | 2.30e-28 | 118 |
MsaG015872 | MtrunA17_Chr8g0377391 | 45.062 | 162 | 65 | 5 | 262 | 399 | 1 | 162 | 6.88e-28 | 108 |
MsaG015872 | MtrunA17_Chr7g0270541 | 61.250 | 80 | 31 | 0 | 165 | 244 | 145 | 224 | 1.40e-26 | 113 |
MsaG015872 | MtrunA17_Chr2g0286661 | 48.315 | 89 | 46 | 0 | 150 | 238 | 88 | 176 | 6.85e-22 | 98.6 |
MsaG015872 | MtrunA17_Chr2g0317041 | 58.065 | 62 | 26 | 0 | 150 | 211 | 84 | 145 | 5.35e-20 | 86.3 |
MsaG015872 | MtrunA17_Chr1g0175031 | 46.602 | 103 | 49 | 2 | 115 | 211 | 18 | 120 | 5.91e-19 | 82.8 |
MsaG015872 | MtrunA17_Chr8g0377411 | 50.000 | 98 | 41 | 3 | 333 | 425 | 3 | 97 | 3.76e-14 | 68.2 |
MsaG015872 | MtrunA17_Chr1g0175021 | 35.220 | 159 | 96 | 3 | 212 | 368 | 8 | 161 | 7.56e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG015872 | AT5G43270.3 | 39.005 | 382 | 168 | 15 | 1 | 353 | 1 | 346 | 1.92e-54 | 187 |
MsaG015872 | AT5G43270.1 | 39.005 | 382 | 168 | 15 | 1 | 353 | 1 | 346 | 1.92e-54 | 187 |
MsaG015872 | AT5G43270.2 | 39.005 | 382 | 168 | 15 | 1 | 353 | 1 | 346 | 1.92e-54 | 187 |
MsaG015872 | AT1G27370.6 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 2.63e-53 | 182 |
MsaG015872 | AT1G27360.2 | 39.687 | 383 | 189 | 16 | 1 | 353 | 1 | 371 | 2.87e-53 | 183 |
MsaG015872 | AT1G27360.1 | 39.687 | 383 | 189 | 16 | 1 | 353 | 1 | 371 | 2.87e-53 | 183 |
MsaG015872 | AT1G27360.3 | 39.687 | 383 | 189 | 16 | 1 | 353 | 1 | 371 | 2.87e-53 | 183 |
MsaG015872 | AT1G27360.4 | 39.687 | 383 | 189 | 16 | 1 | 353 | 1 | 371 | 2.87e-53 | 183 |
MsaG015872 | AT1G27370.1 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 8.72e-53 | 182 |
MsaG015872 | AT1G27370.5 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 8.72e-53 | 182 |
MsaG015872 | AT1G27370.3 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 8.72e-53 | 182 |
MsaG015872 | AT1G27370.2 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 8.72e-53 | 182 |
MsaG015872 | AT1G27370.4 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 8.72e-53 | 182 |
MsaG015872 | AT1G27370.7 | 47.674 | 258 | 110 | 7 | 1 | 240 | 1 | 251 | 8.72e-53 | 182 |
MsaG015872 | AT2G42200.1 | 39.837 | 246 | 125 | 9 | 120 | 358 | 32 | 261 | 1.67e-36 | 138 |
MsaG015872 | AT1G69170.1 | 67.416 | 89 | 29 | 0 | 151 | 239 | 110 | 198 | 1.81e-35 | 135 |
MsaG015872 | AT3G57920.1 | 52.459 | 122 | 45 | 3 | 120 | 241 | 27 | 135 | 4.13e-34 | 130 |
MsaG015872 | AT1G02065.1 | 51.969 | 127 | 53 | 2 | 118 | 243 | 147 | 266 | 6.40e-33 | 127 |
MsaG015872 | AT5G50570.1 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.65e-31 | 124 |
MsaG015872 | AT5G50570.2 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.65e-31 | 124 |
MsaG015872 | AT5G50670.1 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.65e-31 | 124 |
MsaG015872 | AT5G50670.2 | 60.976 | 82 | 32 | 0 | 163 | 244 | 99 | 180 | 1.65e-31 | 124 |
MsaG015872 | AT2G33810.1 | 59.091 | 88 | 33 | 1 | 151 | 238 | 43 | 127 | 1.12e-30 | 115 |
MsaG015872 | AT1G76580.2 | 60.674 | 89 | 35 | 0 | 163 | 251 | 112 | 200 | 2.81e-30 | 124 |
MsaG015872 | AT1G76580.3 | 60.674 | 89 | 35 | 0 | 163 | 251 | 112 | 200 | 3.30e-30 | 124 |
MsaG015872 | AT1G76580.1 | 60.674 | 89 | 35 | 0 | 163 | 251 | 112 | 200 | 5.45e-30 | 123 |
MsaG015872 | AT1G53160.3 | 45.299 | 117 | 56 | 1 | 165 | 273 | 54 | 170 | 1.66e-29 | 113 |
MsaG015872 | AT3G60030.1 | 61.250 | 80 | 31 | 0 | 165 | 244 | 127 | 206 | 3.15e-29 | 121 |
MsaG015872 | AT2G47070.1 | 50.000 | 126 | 56 | 2 | 132 | 256 | 79 | 198 | 8.36e-29 | 120 |
MsaG015872 | AT1G53160.2 | 45.385 | 130 | 56 | 4 | 165 | 288 | 54 | 174 | 1.34e-28 | 111 |
MsaG015872 | AT1G53160.1 | 45.385 | 130 | 56 | 4 | 165 | 288 | 54 | 174 | 1.34e-28 | 111 |
MsaG015872 | AT1G20980.1 | 60.000 | 95 | 37 | 1 | 151 | 244 | 106 | 200 | 2.03e-28 | 119 |
MsaG015872 | AT3G15270.1 | 60.811 | 74 | 29 | 0 | 165 | 238 | 63 | 136 | 4.75e-28 | 109 |
MsaG015872 | AT1G02065.2 | 46.875 | 96 | 43 | 2 | 118 | 212 | 147 | 235 | 6.39e-19 | 86.3 |
MsaG015872 | AT5G18830.2 | 51.316 | 76 | 36 | 1 | 165 | 239 | 138 | 213 | 6.03e-18 | 87.0 |
MsaG015872 | AT5G18830.1 | 51.316 | 76 | 36 | 1 | 165 | 239 | 138 | 213 | 6.60e-18 | 87.0 |
MsaG015872 | AT5G18830.3 | 51.316 | 76 | 36 | 1 | 165 | 239 | 138 | 213 | 6.68e-18 | 87.0 |
MsaG015872 | AT2G47070.2 | 60.294 | 68 | 26 | 1 | 190 | 256 | 2 | 69 | 2.65e-16 | 82.0 |
Find 119 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGATCAGACAAGGTATT+TGG | 0.193506 | 3:-91906637 | None:intergenic |
GCTAAATTTGAAGTATTCTT+TGG | 0.209568 | 3:-91906264 | None:intergenic |
TGCAGAGGAAGAGGCTTTCT+TGG | 0.222637 | 3:-91905336 | None:intergenic |
AGCTTGCTGTTGGGCATGTC+TGG | 0.241731 | 3:-91906291 | None:intergenic |
GTATTCTTTGGAAAAGTAAA+TGG | 0.244323 | 3:-91906252 | None:intergenic |
ATCTTGGTTCCTTTGCCTTT+GGG | 0.251754 | 3:-91906405 | None:intergenic |
AATCTTGGTTCCTTTGCCTT+TGG | 0.274821 | 3:-91906406 | None:intergenic |
GGATTCAATTTCACCGCTTC+AGG | 0.287972 | 3:-91905758 | None:intergenic |
GAGCATAAAATCTTTGGTTT+GGG | 0.292731 | 3:-91906316 | None:intergenic |
TTTAGACGATTCTTTCTTAC+CGG | 0.323854 | 3:-91905216 | None:intergenic |
TGAGCATAAAATCTTTGGTT+TGG | 0.329729 | 3:-91906317 | None:intergenic |
CAATATTCCGGTGACGAAAA+AGG | 0.345818 | 3:-91906796 | None:intergenic |
TTAACATCTTGTGTAGCATT+TGG | 0.347549 | 3:-91906655 | None:intergenic |
GCAAGGGAAACTTGACTCAT+AGG | 0.354069 | 3:-91906917 | None:intergenic |
CTCTTCTGTCAACCAATTCA+TGG | 0.377885 | 3:+91906689 | MsaT015872.1:CDS |
AATCTCTCGGGCAATGGGAC+TGG | 0.379412 | 3:+91904943 | MsaT015872.1:CDS |
TACTACCACCACAGGCGATT+TGG | 0.381836 | 3:-91905498 | None:intergenic |
TTCTTACCGGTGGAATTGTC+TGG | 0.385894 | 3:-91905203 | None:intergenic |
ATCTCTCGGGCAATGGGACT+GGG | 0.388453 | 3:+91904944 | MsaT015872.1:CDS |
ACATGTACCTGCTACATTGC+TGG | 0.389975 | 3:-91905544 | None:intergenic |
GCTGCTGGAGAAGTTTCAAT+TGG | 0.402606 | 3:-91905245 | None:intergenic |
AGCTGCCAGGTGGAAGGTTG+TGG | 0.411491 | 3:+91905416 | MsaT015872.1:CDS |
CGTGAAATCTCTCGGGCAAT+GGG | 0.417423 | 3:+91904938 | MsaT015872.1:CDS |
CAGCGCCTGTATCTCGTTCT+CGG | 0.419065 | 3:+91906846 | MsaT015872.1:CDS |
ACAATCTACTGATTGGAGTA+TGG | 0.424631 | 3:+91905013 | MsaT015872.1:CDS |
GTGAGCAATGGTTCTGCTGC+TGG | 0.432022 | 3:-91905260 | None:intergenic |
AAGTTTCCCTTGCAACCAGC+TGG | 0.440887 | 3:+91906927 | MsaT015872.1:CDS |
ATACACTCCAATCGGACAAC+CGG | 0.451604 | 3:+91906742 | MsaT015872.1:CDS |
TCTTCTGTCAACCAATTCAT+GGG | 0.452114 | 3:+91906690 | MsaT015872.1:CDS |
CGAGATACAGGCGCTGGAGC+TGG | 0.455430 | 3:-91906839 | None:intergenic |
CATCAAACTCTGAGAGATCA+TGG | 0.461380 | 3:-91905673 | None:intergenic |
AATTTCACCGCTTCAGGCTG+AGG | 0.462888 | 3:-91905752 | None:intergenic |
CAACCTTCCACCTGGCAGCT+TGG | 0.467365 | 3:-91905413 | None:intergenic |
AAAGGCAAAGGAACCAAGAT+TGG | 0.469734 | 3:+91906408 | MsaT015872.1:CDS |
TCGCCTGTGGTGGTAGTAGC+TGG | 0.470263 | 3:+91905503 | MsaT015872.1:CDS |
TACTTTGAGGATGTTACCAC+TGG | 0.470829 | 3:+91905305 | MsaT015872.1:CDS |
GTTGGGATGTTGATTCCATC+TGG | 0.471449 | 3:+91905056 | MsaT015872.1:CDS |
CCTTTCTTTCCGCACAAAAG+AGG | 0.471950 | 3:-91905362 | None:intergenic |
TGATCAGTGTGCCAATATTC+CGG | 0.473058 | 3:-91906808 | None:intergenic |
ACAGGTTACAATCTACTGAT+TGG | 0.476801 | 3:+91905006 | MsaT015872.1:CDS |
TGGTAAAAGATTCTACTTTG+AGG | 0.477123 | 3:+91905292 | MsaT015872.1:CDS |
AGGGGTGCCGGTTGTCCGAT+TGG | 0.477616 | 3:-91906749 | None:intergenic |
TGTGGTGGTAGTAGCTGGTT+TGG | 0.481417 | 3:+91905508 | MsaT015872.1:CDS |
TATTCTTTGGAAAAGTAAAT+GGG | 0.482035 | 3:-91906251 | None:intergenic |
ACGTGAAATCTCTCGGGCAA+TGG | 0.484278 | 3:+91904937 | MsaT015872.1:CDS |
ACAACCTGGGACACCAATCT+TGG | 0.485267 | 3:-91906421 | None:intergenic |
AGCATTCTCATTAATCCAGC+TGG | 0.486284 | 3:-91906942 | None:intergenic |
GAAGATCGAGAAATCAATGT+TGG | 0.486543 | 3:+91905038 | MsaT015872.1:CDS |
AAGAGGAACTGCAGAGGAAG+AGG | 0.487764 | 3:-91905345 | None:intergenic |
ATCATATGGACCCCATGAAT+TGG | 0.492799 | 3:-91906701 | None:intergenic |
TTGTCCGATTGGAGTGTATG+AGG | 0.494492 | 3:-91906738 | None:intergenic |
CATTAATCCAGCTGGTTGCA+AGG | 0.496505 | 3:-91906934 | None:intergenic |
GATTGGAGTGTATGAGGGAG+GGG | 0.501793 | 3:-91906732 | None:intergenic |
CTTTGCCTTTGGGTATAAAG+TGG | 0.506910 | 3:-91906395 | None:intergenic |
TTGATTCCATCTGGTGGTAG+TGG | 0.508737 | 3:+91905065 | MsaT015872.1:CDS |
AAGATCGAGAAATCAATGTT+GGG | 0.508795 | 3:+91905039 | MsaT015872.1:CDS |
CACAAATTCTATGTTTCCGA+TGG | 0.510237 | 3:-91905466 | None:intergenic |
GAGTGGAACGTGAAATCTCT+CGG | 0.516839 | 3:+91904930 | MsaT015872.1:CDS |
CAAGGGAAACTTGACTCATA+GGG | 0.517421 | 3:-91906916 | None:intergenic |
CATGCTAAATCCAAGCTGCC+AGG | 0.528294 | 3:+91905403 | MsaT015872.1:CDS |
GTAACCCGAGAACGAGATAC+AGG | 0.528459 | 3:-91906851 | None:intergenic |
CGATTGGAGTGTATGAGGGA+GGG | 0.531040 | 3:-91906733 | None:intergenic |
TGCAGATGGGAGGCAGACAA+TGG | 0.534432 | 3:+91906227 | MsaT015872.1:intron |
CCTCCCTCATACACTCCAAT+CGG | 0.535964 | 3:+91906734 | MsaT015872.1:CDS |
GGAACCAAGATTGGTGTCCC+AGG | 0.539374 | 3:+91906417 | MsaT015872.1:CDS |
AGCGCCTGTATCTCGTTCTC+GGG | 0.540985 | 3:+91906847 | MsaT015872.1:CDS |
ACATCAATGTTAACTCAAGA+AGG | 0.548574 | 3:+91905176 | MsaT015872.1:CDS |
GCAGATGGGAGGCAGACAAT+GGG | 0.549297 | 3:+91906228 | MsaT015872.1:intron |
CAAAAGCAGCAGAAACTCAC+AGG | 0.550624 | 3:+91904988 | MsaT015872.1:CDS |
GGTAAGAAAGAATCGTCTAA+AGG | 0.551763 | 3:+91905218 | MsaT015872.1:CDS |
TTGGCACACTGATCAACATC+AGG | 0.552387 | 3:+91906816 | MsaT015872.1:CDS |
AGTTGCATACTGAGGGGTGC+CGG | 0.554723 | 3:-91906761 | None:intergenic |
TTTGGGTATAAAGTGGCCAC+TGG | 0.554979 | 3:-91906388 | None:intergenic |
CCAAGCTTTAGTGTGAGCAA+TGG | 0.557830 | 3:-91905272 | None:intergenic |
GGGGACGAAGAGAGAGCTGA+TGG | 0.559258 | 3:-91905779 | None:intergenic |
ATTGGAGTGTATGAGGGAGG+GGG | 0.561383 | 3:-91906731 | None:intergenic |
AGAATACTTCAAATTTAGCA+TGG | 0.561391 | 3:+91906268 | MsaT015872.1:CDS |
GAATAATTCATCATCAAATG+AGG | 0.562543 | 3:+91905145 | MsaT015872.1:CDS |
ATTAATCCAGCTGGTTGCAA+GGG | 0.568989 | 3:-91906933 | None:intergenic |
CGCTGAGCAGTTGCATACTG+AGG | 0.570454 | 3:-91906769 | None:intergenic |
CTTTAGCAAAAGAGAGGTCG+AGG | 0.571109 | 3:-91905439 | None:intergenic |
AATCCAAGCTGCCAGGTGGA+AGG | 0.571632 | 3:+91905410 | MsaT015872.1:CDS |
CACTTTATACCCAAAGGCAA+AGG | 0.572389 | 3:+91906396 | MsaT015872.1:CDS |
CGAGGCCACAACCTTCCACC+TGG | 0.580184 | 3:-91905421 | None:intergenic |
CTTGAGATTTATACCATAGG+GGG | 0.580458 | 3:-91905798 | None:intergenic |
AGACGATTCTTTCTTACCGG+TGG | 0.582162 | 3:-91905213 | None:intergenic |
TTTCTTGGAATGACTTCCAG+TGG | 0.587315 | 3:-91905321 | None:intergenic |
CCATTGCTCACACTAAAGCT+TGG | 0.588106 | 3:+91905272 | MsaT015872.1:CDS |
TGTCCGATTGGAGTGTATGA+GGG | 0.588850 | 3:-91906737 | None:intergenic |
GTCTTTCAGATCACAATGCA+AGG | 0.591028 | 3:+91905720 | MsaT015872.1:CDS |
GCATAAAATCTTTGGTTTGG+GGG | 0.594228 | 3:-91906314 | None:intergenic |
AGTGGAACGTGAAATCTCTC+GGG | 0.596108 | 3:+91904931 | MsaT015872.1:CDS |
GCTGAGCAGTTGCATACTGA+GGG | 0.602329 | 3:-91906768 | None:intergenic |
TTGACAGAAGAGAGAGAGCA+CGG | 0.603893 | 3:-91906678 | None:intergenic |
AGCATAAAATCTTTGGTTTG+GGG | 0.604215 | 3:-91906315 | None:intergenic |
CCGATTGGAGTGTATGAGGG+AGG | 0.604444 | 3:-91906734 | None:intergenic |
CGAGAACGAGATACAGGCGC+TGG | 0.614056 | 3:-91906845 | None:intergenic |
AAACCAGCTACTACCACCAC+AGG | 0.617364 | 3:-91905506 | None:intergenic |
TTGCATTGTGATCTGAAAGA+CGG | 0.621589 | 3:-91905718 | None:intergenic |
TGTGAGGACTTGTCATGGAG+TGG | 0.623994 | 3:+91904913 | None:intergenic |
GGTAATCTTTAGCAAAAGAG+AGG | 0.625875 | 3:-91905445 | None:intergenic |
TCGCAAACCTCAGCCTGAAG+CGG | 0.630982 | 3:+91905745 | MsaT015872.1:CDS |
GAATAGCCACTACCACCAGA+TGG | 0.631021 | 3:-91905071 | None:intergenic |
TCATTCCAAATCGCCTGTGG+TGG | 0.632811 | 3:+91905493 | MsaT015872.1:CDS |
CTTCTGTCAACCAATTCATG+GGG | 0.634971 | 3:+91906691 | MsaT015872.1:CDS |
AGTGGCCACTTTATACCCAA+AGG | 0.636039 | 3:+91906390 | MsaT015872.1:CDS |
ATCTACTGATTGGAGTATGG+AGG | 0.643141 | 3:+91905016 | MsaT015872.1:CDS |
TTGGAGTGTATGAGGGAGGG+GGG | 0.645515 | 3:-91906730 | None:intergenic |
GGGATGTTGATTCCATCTGG+TGG | 0.647072 | 3:+91905059 | MsaT015872.1:CDS |
CAGTCATTCCAAATCGCCTG+TGG | 0.648152 | 3:+91905490 | MsaT015872.1:CDS |
TGTAGCATTTGGATCAGACA+AGG | 0.648361 | 3:-91906644 | None:intergenic |
ATATTCATTCTGCAGATGGG+AGG | 0.649420 | 3:+91906217 | MsaT015872.1:intron |
GGTTCTCCAGACAATTCCAC+CGG | 0.652614 | 3:+91905197 | MsaT015872.1:CDS |
TCTTGAGATTTATACCATAG+GGG | 0.653113 | 3:-91905799 | None:intergenic |
CTGAGCAGTTGCATACTGAG+GGG | 0.662729 | 3:-91906767 | None:intergenic |
GCTAAATCCAAGCTGCCAGG+TGG | 0.663879 | 3:+91905406 | MsaT015872.1:CDS |
ATGCTATCTGATGATTCCAG+TGG | 0.666446 | 3:+91906372 | MsaT015872.1:CDS |
TAATGCATGCTTCATCCTCG+AGG | 0.674783 | 3:+91905105 | MsaT015872.1:CDS |
GCACAAAAGAGGAACTGCAG+AGG | 0.694164 | 3:-91905351 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 91904927 | 91906954 | 91904927 | ID=MsaG015872 |
Chr3 | mRNA | 91904927 | 91906954 | 91904927 | ID=MsaT015872.1;Parent=MsaG015872 |
Chr3 | exon | 91904927 | 91905558 | 91904927 | ID=MsaT015872.1.exon1;Parent=MsaT015872.1 |
Chr3 | CDS | 91904927 | 91905558 | 91904927 | ID=cds.MsaT015872.1;Parent=MsaT015872.1 |
Chr3 | exon | 91905670 | 91905806 | 91905670 | ID=MsaT015872.1.exon2;Parent=MsaT015872.1 |
Chr3 | CDS | 91905670 | 91905806 | 91905670 | ID=cds.MsaT015872.1;Parent=MsaT015872.1 |
Chr3 | exon | 91906232 | 91906438 | 91906232 | ID=MsaT015872.1.exon3;Parent=MsaT015872.1 |
Chr3 | CDS | 91906232 | 91906438 | 91906232 | ID=cds.MsaT015872.1;Parent=MsaT015872.1 |
Chr3 | exon | 91906626 | 91906954 | 91906626 | ID=MsaT015872.1.exon4;Parent=MsaT015872.1 |
Chr3 | CDS | 91906626 | 91906954 | 91906626 | ID=cds.MsaT015872.1;Parent=MsaT015872.1 |
Gene Sequence |
Protein sequence |