AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG015944

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015944 MtrunA17_Chr3g0123131 97.719 570 13 0 1 570 1 570 0.0 1167
MsaG015944 MtrunA17_Chr8g0376881 61.606 573 162 10 1 561 12 538 0.0 651
MsaG015944 MtrunA17_Chr1g0161431 56.985 272 110 2 12 278 10 279 1.86e-96 306
MsaG015944 MtrunA17_Chr4g0067981 59.770 261 91 2 13 267 31 283 8.05e-93 298
MsaG015944 MtrunA17_Chr2g0294911 56.917 253 105 1 13 265 29 277 2.35e-90 290
MsaG015944 MtrunA17_Chr3g0137101 52.288 306 115 5 13 290 8 310 8.26e-88 285
MsaG015944 MtrunA17_Chr1g0149841 55.777 251 99 3 13 257 5 249 1.20e-80 261
MsaG015944 MtrunA17_Chr7g0275891 43.385 325 150 6 13 310 5 322 2.19e-75 243
MsaG015944 MtrunA17_Chr2g0304841 51.737 259 104 2 13 256 18 270 3.71e-74 249
MsaG015944 MtrunA17_Chr4g0074411 52.590 251 108 3 13 259 18 261 1.15e-73 246
MsaG015944 MtrunA17_Chr4g0074401 51.351 259 108 5 10 259 14 263 1.37e-72 243
MsaG015944 MtrunA17_Chr1g0149851 51.515 264 103 4 13 256 5 263 4.16e-71 238
MsaG015944 MtrunA17_Chr7g0275401 48.120 266 125 3 12 269 4 264 4.68e-69 224
MsaG015944 MtrunA17_Chr3g0134481 45.798 238 67 2 13 250 8 183 1.05e-59 196
MsaG015944 MtrunA17_Chr4g0009851 39.689 257 127 3 6 262 4 232 1.62e-58 197
MsaG015944 MtrunA17_Chr4g0009901 42.366 262 121 4 13 274 10 241 2.08e-58 196
MsaG015944 MtrunA17_Chr4g0074421 51.269 197 79 5 63 253 2 187 8.20e-54 181
MsaG015944 MtrunA17_Chr1g0149831 52.604 192 76 4 72 257 1 183 2.88e-52 178
MsaG015944 MtrunA17_Chr3g0134461 45.148 237 77 2 13 248 8 192 5.20e-51 174
MsaG015944 MtrunA17_Chr6g0471041 36.327 245 126 5 11 254 12 227 2.20e-43 160
MsaG015944 MtrunA17_Chr4g0009981 38.863 211 102 3 58 268 2 185 1.63e-42 153
MsaG015944 MtrunA17_Chr8g0391911 32.549 255 132 6 13 248 9 242 1.20e-33 129
MsaG015944 MtrunA17_Chr8g0383961 44.094 127 71 0 13 139 14 140 9.49e-29 115
MsaG015944 MtrunA17_Chr8g0350761 31.250 256 154 7 15 251 19 271 1.64e-26 112
MsaG015944 MtrunA17_Chr4g0011071 32.530 166 85 2 59 224 35 173 3.11e-26 105
MsaG015944 MtrunA17_Chr6g0456631 35.507 138 81 4 12 142 8 144 4.47e-24 99.4
MsaG015944 MtrunA17_Chr6g0473731 35.484 186 95 5 93 278 10 170 6.59e-24 104
MsaG015944 MtrunA17_Chr3g0127941 41.129 124 68 2 17 136 56 178 1.29e-23 105
MsaG015944 MtrunA17_Chr7g0276361 37.500 128 71 2 14 135 11 135 6.70e-21 96.7
MsaG015944 MtrunA17_Chr3g0091641 34.959 123 77 1 17 136 24 146 5.26e-20 94.0
MsaG015944 MtrunA17_Chr4g0061021 35.772 123 76 1 17 136 33 155 1.11e-19 92.8
MsaG015944 MtrunA17_Chr4g0030271 36.585 123 73 2 17 135 89 210 1.38e-19 92.8
MsaG015944 MtrunA17_Chr8g0345901 34.586 133 78 3 9 137 32 159 5.63e-19 90.9
MsaG015944 MtrunA17_Chr1g0181811 36.066 122 75 1 17 135 85 206 1.81e-18 89.4
MsaG015944 MtrunA17_Chr4g0009991 35.417 144 65 3 105 248 1 116 2.14e-18 81.6
MsaG015944 MtrunA17_Chr5g0423031 43.210 81 45 1 13 93 10 89 3.52e-18 82.8
MsaG015944 MtrunA17_Chr4g0031961 42.424 99 51 1 176 268 102 200 8.44e-17 81.6
MsaG015944 MtrunA17_Chr4g0010001 44.444 81 44 1 13 93 10 89 1.46e-16 75.1
MsaG015944 MtrunA17_Chr4g0054981 36.508 126 76 2 11 135 12 134 3.74e-16 81.6
MsaG015944 MtrunA17_Chr4g0054981 58.929 56 23 0 198 253 309 364 1.49e-13 73.6
MsaG015944 MtrunA17_Chr7g0223971 27.727 220 100 5 95 278 1 197 3.76e-16 81.6
MsaG015944 MtrunA17_Chr7g0255711 57.377 61 26 0 198 258 90 150 7.70e-16 78.6
MsaG015944 MtrunA17_Chr5g0400241 36.220 127 75 3 11 135 12 134 3.70e-14 75.5
MsaG015944 MtrunA17_Chr5g0400241 47.222 72 38 0 193 264 305 376 4.37e-14 75.1
MsaG015944 MtrunA17_Chr4g0059571 29.078 141 85 3 14 139 20 160 3.14e-13 69.3
MsaG015944 MtrunA17_Chr2g0324891 43.662 71 40 0 198 268 160 230 1.55e-12 69.7
MsaG015944 MtrunA17_Chr4g0040481 43.478 69 39 0 198 266 157 225 2.51e-12 68.9
MsaG015944 MtrunA17_Chr7g0256551 28.571 140 79 2 19 137 11 150 5.29e-12 66.2
MsaG015944 MtrunA17_Chr8g0352871 28.472 144 83 3 19 142 11 154 1.63e-11 63.2
MsaG015944 MtrunA17_Chr6g0461641 35.897 117 54 3 195 296 38 148 3.52e-11 65.5
MsaG015944 MtrunA17_Chr6g0469321 70.455 44 13 0 214 257 69 112 4.52e-11 62.0
MsaG015944 MtrunA17_Chr2g0321461 49.153 59 29 1 195 252 41 99 5.49e-11 64.7
MsaG015944 MtrunA17_Chr1g0198601 35.294 102 61 2 167 267 183 280 5.66e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG015944 AT1G67710.1 51.247 441 149 11 14 438 8 398 1.73e-124 376
MsaG015944 AT3G16857.1 58.582 268 83 4 13 257 33 295 1.09e-90 293
MsaG015944 AT3G16857.2 58.582 268 83 4 13 257 33 295 1.64e-90 293
MsaG015944 AT2G01760.1 54.307 267 113 3 13 271 7 272 9.19e-86 271
MsaG015944 AT1G67710.2 45.170 383 144 11 72 438 1 333 5.47e-83 267
MsaG015944 AT2G25180.1 56.641 256 101 3 13 265 13 261 1.85e-82 270
MsaG015944 AT2G01760.2 41.514 383 169 7 13 344 7 385 1.45e-79 256
MsaG015944 AT4G31920.1 49.242 264 106 4 13 270 13 254 7.77e-75 248
MsaG015944 AT3G16857.3 56.769 229 71 4 52 257 2 225 4.60e-70 237
MsaG015944 AT5G58080.1 49.621 264 126 4 1 263 1 258 2.73e-67 230
MsaG015944 AT1G67710.3 41.873 363 145 11 92 438 12 324 2.87e-66 223
MsaG015944 AT2G01760.3 52.404 208 90 3 72 271 1 207 5.96e-59 199
MsaG015944 AT5G49240.1 40.161 249 133 5 6 248 34 272 4.07e-49 172
MsaG015944 AT1G49190.1 31.047 277 166 5 13 275 30 295 8.51e-37 142
MsaG015944 AT5G07210.2 32.727 275 141 5 17 257 16 280 1.62e-35 141
MsaG015944 AT5G07210.1 31.802 283 141 7 17 257 16 288 3.13e-33 134
MsaG015944 AT3G62670.1 35.833 240 135 6 18 251 42 268 8.73e-33 130
MsaG015944 AT2G27070.1 32.472 271 150 8 17 257 16 283 3.19e-32 131
MsaG015944 AT1G49190.2 41.600 125 73 0 13 137 30 154 7.11e-26 112
MsaG015944 AT1G68210.1 24.601 313 196 6 4 286 3 305 1.86e-22 102
MsaG015944 AT2G46790.3 38.211 123 71 2 17 135 37 158 6.20e-22 99.4
MsaG015944 AT5G24470.1 37.600 125 73 2 16 136 49 172 7.31e-22 99.8
MsaG015944 AT2G46790.1 38.211 123 71 2 17 135 37 158 7.44e-22 99.4
MsaG015944 AT5G60100.2 41.085 129 70 3 17 141 64 190 3.56e-21 97.4
MsaG015944 AT5G61380.1 37.398 123 74 1 17 136 19 141 1.09e-20 96.7
MsaG015944 AT5G60100.7 39.837 123 69 2 17 135 64 185 1.81e-20 94.4
MsaG015944 AT5G60100.6 39.837 123 69 2 17 135 64 185 1.81e-20 94.4
MsaG015944 AT5G60100.4 39.837 123 69 2 17 135 64 185 1.81e-20 94.4
MsaG015944 AT5G60100.5 39.837 123 69 2 17 135 64 185 2.91e-20 94.7
MsaG015944 AT5G60100.3 39.837 123 69 2 17 135 64 185 2.91e-20 94.7
MsaG015944 AT5G60100.1 39.837 123 69 2 17 135 64 185 2.91e-20 94.7
MsaG015944 AT5G59570.2 46.392 97 45 2 162 258 111 200 6.98e-18 85.1
MsaG015944 AT5G59570.1 46.392 97 45 2 162 258 111 200 6.98e-18 85.1
MsaG015944 AT5G02810.1 37.398 123 72 2 17 135 78 199 1.86e-17 86.7
MsaG015944 AT3G46640.2 51.899 79 37 1 190 267 135 213 6.30e-17 82.4
MsaG015944 AT3G46640.1 51.899 79 37 1 190 267 135 213 6.30e-17 82.4
MsaG015944 AT3G46640.3 51.899 79 37 1 190 267 135 213 1.08e-16 82.0
MsaG015944 AT2G40970.1 57.377 61 26 0 198 258 104 164 4.46e-16 78.6
MsaG015944 AT3G10760.1 57.377 61 26 0 198 258 104 164 6.72e-16 79.7
MsaG015944 AT5G05090.1 55.738 61 27 0 198 258 80 140 2.28e-15 77.0
MsaG015944 AT5G44190.2 46.154 78 42 0 198 275 146 223 2.35e-14 75.1
MsaG015944 AT5G44190.1 47.368 76 40 0 198 273 146 221 2.76e-14 75.5
MsaG015944 AT2G20570.1 36.667 120 71 2 158 272 107 226 3.06e-13 72.4
MsaG015944 AT4G18020.8 34.074 135 80 3 12 139 13 145 7.53e-13 71.2
MsaG015944 AT4G18020.8 37.383 107 56 2 156 253 246 350 1.86e-12 70.1
MsaG015944 AT4G18020.11 34.074 135 80 3 12 139 13 145 7.53e-13 71.2
MsaG015944 AT4G18020.11 37.383 107 56 2 156 253 246 350 1.86e-12 70.1
MsaG015944 AT4G18020.4 34.074 135 80 3 12 139 13 145 7.53e-13 71.2
MsaG015944 AT4G18020.4 37.383 107 56 2 156 253 246 350 1.86e-12 70.1
MsaG015944 AT4G18020.5 34.074 135 80 3 12 139 13 145 7.53e-13 71.2
MsaG015944 AT4G18020.5 37.383 107 56 2 156 253 246 350 1.86e-12 70.1
MsaG015944 AT4G18020.10 34.074 135 80 3 12 139 13 145 7.53e-13 71.2
MsaG015944 AT4G18020.10 37.383 107 56 2 156 253 246 350 1.86e-12 70.1
MsaG015944 AT4G18020.7 34.074 135 80 3 12 139 13 145 7.53e-13 71.2
MsaG015944 AT4G18020.7 37.383 107 56 2 156 253 246 350 1.86e-12 70.1
MsaG015944 AT4G18020.3 35.115 131 76 3 12 135 13 141 9.62e-13 71.2
MsaG015944 AT4G18020.3 37.383 107 56 2 156 253 246 350 1.64e-12 70.5
MsaG015944 AT4G18020.2 35.115 131 76 3 12 135 13 141 9.62e-13 71.2
MsaG015944 AT4G18020.2 37.383 107 56 2 156 253 246 350 1.64e-12 70.5
MsaG015944 AT4G18020.1 35.115 131 76 3 12 135 13 141 9.62e-13 71.2
MsaG015944 AT4G18020.1 37.383 107 56 2 156 253 246 350 1.64e-12 70.5
MsaG015944 AT4G18020.6 35.115 131 76 3 12 135 13 141 9.62e-13 71.2
MsaG015944 AT4G18020.6 37.383 107 56 2 156 253 246 350 1.64e-12 70.5
MsaG015944 AT4G18020.9 35.115 131 76 3 12 135 13 141 9.62e-13 71.2
MsaG015944 AT4G18020.9 37.383 107 56 2 156 253 246 350 1.64e-12 70.5
MsaG015944 AT3G57040.2 27.778 162 91 4 19 158 11 168 1.61e-12 67.8
MsaG015944 AT3G57040.1 27.778 162 91 4 19 158 11 168 1.61e-12 67.8
MsaG015944 AT2G20570.2 44.444 72 40 0 201 272 171 242 4.24e-12 68.9
MsaG015944 AT1G69580.1 42.857 84 47 1 186 268 21 104 2.06e-11 65.9
MsaG015944 AT1G69580.2 42.857 84 47 1 186 268 21 104 2.19e-11 65.9

Find 94 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGCTGCTTGCCATTTA+AGG 0.123652 3:+92556950 None:intergenic
CGCAACTCTTTCATCCTTAT+AGG 0.193820 3:+92558498 None:intergenic
ACACGACGACAAAGAATTTC+TGG 0.206213 3:-92558298 MsaT015944.1:CDS
CTCCCAAAAGTAGGTTTCTT+TGG 0.223208 3:+92556646 None:intergenic
TTCAACCTATTGCCCTTAAA+TGG 0.231156 3:-92556963 MsaT015944.1:CDS
ATCATTCATCATAAGGCTTC+CGG 0.251176 3:+92556755 None:intergenic
CCTATTTCCACTACTAATTT+CGG 0.260366 3:-92556720 MsaT015944.1:CDS
GGCAACATGTCTTCAGAAAA+AGG 0.266185 3:-92558467 MsaT015944.1:CDS
TCAAAAGATGTAGGAAATTT+CGG 0.268298 3:-92557326 MsaT015944.1:CDS
GGAATTTCAGTCCAAGAATA+TGG 0.271706 3:+92557038 None:intergenic
TCTGATTCGAGTGGGTTAAA+AGG 0.305989 3:+92557098 None:intergenic
CTTTCATCCTTATAGGCTTA+AGG 0.308983 3:+92558505 None:intergenic
TTACCAAAGAAACCTACTTT+TGG 0.311221 3:-92556649 MsaT015944.1:CDS
GAATGTTGCTAGCCACTTAC+AGG 0.318285 3:-92557737 MsaT015944.1:intron
CCGAAATTAGTAGTGGAAAT+AGG 0.318852 3:+92556720 None:intergenic
ACTATCTCCTTAAGCCTATA+AGG 0.322260 3:-92558512 MsaT015944.1:CDS
TGAAGCAGCTTCTGCGCCTT+TGG 0.331281 3:-92556622 MsaT015944.1:CDS
ACGAGGACTTATATTTCTAT+TGG 0.343534 3:-92556599 MsaT015944.1:CDS
ACATGTCAACACCATATTCT+TGG 0.360381 3:-92557049 MsaT015944.1:CDS
TTATGCTGCTTGCCATTTAA+GGG 0.367070 3:+92556951 None:intergenic
GGAATGTGCAACAATTCCTT+TGG 0.372703 3:+92557190 None:intergenic
GTTGAATCATATAAGTGGTT+TGG 0.380619 3:+92556504 None:intergenic
GCTTGCCATTTAAGGGCAAT+AGG 0.380909 3:+92556958 None:intergenic
TCATTCATCATAAGGCTTCC+GGG 0.383196 3:+92556756 None:intergenic
CAAAGAAAGCTCGAGTAGTT+TGG 0.384580 3:-92558263 MsaT015944.1:CDS
TGAAAGAGTTGCGAAATATA+TGG 0.396476 3:-92558488 MsaT015944.1:CDS
AACTTTGGTCAACAGAATAT+AGG 0.396927 3:-92556567 MsaT015944.1:CDS
TAGGTTGATCATTCATCATA+AGG 0.400146 3:+92556748 None:intergenic
TATTGGCATAATATGAACTT+TGG 0.411212 3:-92556582 MsaT015944.1:CDS
ACTTTGGTCAACAGAATATA+GGG 0.416874 3:-92556566 MsaT015944.1:CDS
TGTTGCTTGTTTGCTGAGTT+CGG 0.418693 3:+92557299 None:intergenic
GAATGTGCAACAATTCCTTT+GGG 0.430333 3:+92557191 None:intergenic
AGCATGCACTTGATGAGAAA+TGG 0.443162 3:-92558402 MsaT015944.1:CDS
GATTTACCTTCAAAAGATGT+AGG 0.444043 3:-92557335 MsaT015944.1:CDS
GACATCTTGCTCTGTTATAG+AGG 0.450734 3:+92556881 None:intergenic
GTTAAAGCAGTGAATCAGAT+TGG 0.453872 3:-92558216 MsaT015944.1:CDS
CTCAAGAAGTGTAATTATGA+AGG 0.461617 3:-92559783 MsaT015944.1:intron
AACTACTCGAGCTTTCTTTG+AGG 0.464350 3:+92558266 None:intergenic
AGCTTCTGCGCCTTTGGACG+AGG 0.465782 3:-92556616 MsaT015944.1:CDS
TCATATCTTCTAAAGCAAAC+AGG 0.481173 3:+92558355 None:intergenic
AGTTTGAAACCGTCCATGTC+GGG 0.482203 3:+92558754 None:intergenic
AATTTGTTGTGCAGAAATAC+CGG 0.482831 3:-92557424 MsaT015944.1:intron
TCAAGGATCTTAAGCCATGT+TGG 0.493168 3:+92559813 None:intergenic
AATCTGTTGAATCATATAAG+TGG 0.495988 3:+92556499 None:intergenic
GGAACTTCTATGAGAAGTCC+TGG 0.496302 3:+92556525 None:intergenic
CTGCTTCACCTCCCAAAAGT+AGG 0.498434 3:+92556637 None:intergenic
GATTATTCAGTAATTGATCA+AGG 0.504935 3:-92556480 MsaT015944.1:CDS
ATGTCTGAGTATTATGATCC+AGG 0.508275 3:-92556543 MsaT015944.1:CDS
TTCAAACTTCTTGAGCATGT+TGG 0.518961 3:-92558739 MsaT015944.1:CDS
CTCTAAGCTTGCTTCGTGAA+AGG 0.524950 3:-92558816 MsaT015944.1:CDS
CAAGAAAGACTACACTAGTT+CGG 0.525368 3:-92556820 MsaT015944.1:CDS
TGAGCATGTTGGACTTGAGA+TGG 0.531729 3:-92558728 MsaT015944.1:CDS
CCGTGGATGGAGAAACAAGC+AGG 0.533449 3:-92558566 MsaT015944.1:CDS
ATAGTAACATCACCTGTAAG+TGG 0.535698 3:+92557725 None:intergenic
AGAATGCTTCATTCCACTTG+AGG 0.537639 3:+92557358 None:intergenic
CCTGCTTGTTTCTCCATCCA+CGG 0.545386 3:+92558566 None:intergenic
TCATCATAAGGCTTCCGGGT+TGG 0.545654 3:+92556760 None:intergenic
GAAGTCTACTCAAGTAAAGC+CGG 0.548598 3:+92557405 None:intergenic
GACAAATACAACTATTCTGA+AGG 0.548895 3:-92557260 MsaT015944.1:CDS
ATAAGGCTTCCGGGTTGGAA+AGG 0.569730 3:+92556765 None:intergenic
GTAAACATGCCCGACATGGA+CGG 0.570099 3:-92558763 MsaT015944.1:CDS
TTGCTCTGTTATAGAGGGAG+CGG 0.570348 3:+92556887 None:intergenic
GACACCTTTCCTTTCCAACC+CGG 0.571228 3:-92556774 MsaT015944.1:CDS
GTAGTGGAAATAGGTTGTGT+AGG 0.571324 3:+92556729 None:intergenic
ATAGAAACTAAAAGTCATGA+AGG 0.577004 3:-92557218 MsaT015944.1:CDS
CGATGTAAACATGCCCGACA+TGG 0.580139 3:-92558767 MsaT015944.1:CDS
GGATCAGAGATGTCTGAGGA+GGG 0.581360 3:-92558381 MsaT015944.1:CDS
ATAGAGAACTGACTAATGAC+AGG 0.581856 3:+92558700 None:intergenic
AAATATAAGTCCTCGTCCAA+AGG 0.586082 3:+92556606 None:intergenic
CTTGTATAGAAACAAAACCT+AGG 0.593384 3:-92556854 MsaT015944.1:CDS
ACAAGAACTCGTAAACCAGC+AGG 0.595339 3:+92559849 None:intergenic
TTCTTGTAATCATAAAACCT+AGG 0.596152 3:+92556837 None:intergenic
TAGATTTGATGAATGTTCCA+TGG 0.598681 3:-92557771 MsaT015944.1:CDS
ACATCTTGCTCTGTTATAGA+GGG 0.608912 3:+92556882 None:intergenic
ACATTCTCTCTACTCAGCCA+TGG 0.609214 3:+92557754 None:intergenic
TTGCTTCGTGAAAGGAAAGA+CGG 0.611540 3:-92558808 MsaT015944.1:CDS
AAGTTTGAAACCGTCCATGT+CGG 0.611862 3:+92558753 None:intergenic
TGGATCAGAGATGTCTGAGG+AGG 0.612409 3:-92558382 MsaT015944.1:CDS
AAAGTCACTTGTTCATCTAG+AGG 0.616120 3:-92556991 MsaT015944.1:CDS
GATAGTCACATGCACCGTGT+TGG 0.616316 3:+92558529 None:intergenic
GATCAGAGATGTCTGAGGAG+GGG 0.621652 3:-92558380 MsaT015944.1:CDS
GAAACAAGCAGGGTGATGAA+AGG 0.627020 3:-92558555 MsaT015944.1:CDS
CTCGAATCAGAACGAAAACG+TGG 0.629850 3:-92557086 MsaT015944.1:CDS
AGTCATGAAGGTAATCCCAA+AGG 0.634878 3:-92557206 MsaT015944.1:CDS
TGGTTTACGAGTTCTTGTTG+TGG 0.652536 3:-92559844 MsaT015944.1:CDS
CGTGGATGGAGAAACAAGCA+GGG 0.655838 3:-92558565 MsaT015944.1:CDS
TGTTCAGTGATGTCCGTGGA+TGG 0.656358 3:-92558579 MsaT015944.1:intron
AAATGGATCAGAGATGTCTG+AGG 0.666125 3:-92558385 MsaT015944.1:CDS
GTGATGAAAGGTGTCCAACA+CGG 0.667153 3:-92558543 MsaT015944.1:CDS
ATGTCTTGCTAAGCAACATG+TGG 0.682204 3:+92558840 None:intergenic
CCAGCAGGAAAATCGCGTCG+AGG 0.689105 3:+92559864 None:intergenic
GCTTCCGGGTTGGAAAGGAA+AGG 0.689286 3:+92556770 None:intergenic
ATGCTGTTCAGTGATGTCCG+TGG 0.714764 3:-92558583 MsaT015944.1:intron
TTGTGGATGATGATCCAACA+TGG 0.719364 3:-92559827 MsaT015944.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 92556464 92559910 92556464 ID=MsaG015944
Chr3 mRNA 92556464 92559910 92556464 ID=MsaT015944.1;Parent=MsaG015944
Chr3 exon 92556464 92557432 92556464 ID=MsaT015944.1.exon5;Parent=MsaT015944.1
Chr3 CDS 92556464 92557432 92556464 ID=cds.MsaT015944.1;Parent=MsaT015944.1
Chr3 exon 92557738 92557814 92557738 ID=MsaT015944.1.exon4;Parent=MsaT015944.1
Chr3 CDS 92557738 92557814 92557738 ID=cds.MsaT015944.1;Parent=MsaT015944.1
Chr3 exon 92558208 92558594 92558208 ID=MsaT015944.1.exon3;Parent=MsaT015944.1
Chr3 CDS 92558208 92558594 92558208 ID=cds.MsaT015944.1;Parent=MsaT015944.1
Chr3 exon 92558713 92558865 92558713 ID=MsaT015944.1.exon2;Parent=MsaT015944.1
Chr3 CDS 92558713 92558865 92558713 ID=cds.MsaT015944.1;Parent=MsaT015944.1
Chr3 exon 92559784 92559910 92559784 ID=MsaT015944.1.exon1;Parent=MsaT015944.1
Chr3 CDS 92559784 92559910 92559784 ID=cds.MsaT015944.1;Parent=MsaT015944.1
Gene Sequence

>MsaT015944.1

ATGGATAATGGTTGCTTCTCTTCGCCTCGACGCGATTTTCCTGCTGGTTTACGAGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCCGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACACGGTGCATGTGACTATCTCCTTAAGCCTATAAGGATGAAAGAGTTGCGAAATATATGGCAACATGTCTTCAGAAAAAGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGATGTCTGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAGCAGACACGACGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTCGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTACAGAAATACCGGCTTTACTTGAGTAGACTTCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAATTTCGGTTTTCCGAACTCAGCAAACAAGCAACAAAATGATGCTTCAATCGACAAATACAACTATTCTGAAGGAAGCTTACAACATCAGAACATAGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTGCACATTCCACTGCTGCAGAAAAAGAAAGAGCTTTGACTGGTAACATCACTGATGCAACAGACATTGCACTTAATAAACCTTTTAACCCACTCGAATCAGAACGAAAACGTGGAGCGTTTGATTGCAACATGTCAACACCATATTCTTGGACTGAAATTCCAAAAACACAGCTCAAAAAAGAACAAAAGTCACTTGTTCATCTAGAGGATAACTTCAACCTATTGCCCTTAAATGGCAAGCAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCGCTCCCTCTATAACAGAGCAAGATGTCGCTGCTTGTATAGAAACAAAACCTAGGTTTTATGATTACAAGAAAGACTACACTAGTTCGGTGAGTTCAAGAAGAACTTCAGTTGACACCTTTCCTTTCCAACCCGGAAGCCTTATGATGAATGATCAACCTACACAACCTATTTCCACTACTAATTTCGGCTTAAAAACACAGACATCTAATCTTAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTGGGAGGTGAAGCAGCTTCTGCGCCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAACAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTCTCATAGAAGTTCCAAACCACTTATATGATTCAACAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA
Protein sequence

>MsaT015944.1

MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSEMSEEGNLFALEDMTSTKKRKDVDSRHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPSKDVGNFGFPNSANKQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVAHSTAAEKERALTGNITDATDIALNKPFNPLESERKRGAFDCNMSTPYSWTEIPKTQLKKEQKSLVHLEDNFNLLPLNGKQHNIQVDQSQSIASISSAPSITEQDVAACIETKPRFYDYKKDYTSSVSSRRTSVDTFPFQPGSLMMNDQPTQPISTTNFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFYWHNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSTDYSVIDQGLFIA*