AlfalfaGEDB | MsaG016117

M. sativa ssp. caerulea / MsaG016117

KEGG: K21554
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016117	KEH41184.1	71.661	307	67	4	1	305	1	289	9.40e-134	397

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016117	A0A072VGK8	71.661	307	67	4	1	305	1	289	4.49e-134	397

TFs/TRs:

Gene ID	Type	Classification
MsaG016117	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG016117	0.807330	9.049741e-50	1.449256e-47
MsaG000253	MsaG016117	0.827649	2.486718e-54	6.733629e-52
MsaG000286	MsaG016117	0.803261	6.383558e-49	9.295641e-47
MsaG000545	MsaG016117	0.805325	2.383734e-49	3.641253e-47
MsaG000705	MsaG016117	0.800190	2.705509e-48	3.673635e-46
MsaG000867	MsaG016117	0.805183	2.551911e-49	3.885380e-47
MsaG001618	MsaG016117	0.822756	3.523781e-53	8.339969e-51
MsaG001852	MsaG016117	0.825223	9.355199e-54	2.367755e-51
MsaG002065	MsaG016117	0.816457	9.505732e-52	1.906765e-49
MsaG002167	MsaG016117	0.800347	2.514669e-48	3.426725e-46
MsaG002532	MsaG016117	0.800466	2.378521e-48	3.249958e-46
MsaG002810	MsaG016117	0.801192	1.693376e-48	2.351994e-46
MsaG003237	MsaG016117	0.808500	5.115642e-50	8.425900e-48
MsaG003274	MsaG016117	0.806450	1.386250e-49	2.174447e-47
MsaG003326	MsaG016117	0.800900	1.942103e-48	2.679683e-46
MsaG003308	MsaG016117	0.817659	5.119029e-52	1.059073e-49
MsaG003431	MsaG016117	0.844082	1.761276e-58	7.830691e-56
MsaG003590	MsaG016117	0.860612	3.601735e-63	2.866779e-60
MsaG003727	MsaG016117	0.823877	1.933536e-53	4.717162e-51
MsaG004091	MsaG016117	0.835697	2.633334e-56	9.006383e-54
MsaG004357	MsaG016117	0.818915	2.668653e-52	5.703920e-50
MsaG004756	MsaG016117	0.809220	3.594990e-50	6.024517e-48
MsaG005613	MsaG016117	0.815366	1.660662e-51	3.240106e-49
MsaG005831	MsaG016117	0.819459	2.008683e-52	4.355231e-50
MsaG005836	MsaG016117	0.801543	1.436251e-48	2.010810e-46
MsaG005906	MsaG016117	0.812328	7.699429e-51	1.392019e-48
MsaG005940	MsaG016117	0.813012	5.466155e-51	1.005231e-48
MsaG006195	MsaG016117	0.838901	4.021467e-57	1.516855e-54
MsaG006231	MsaG016117	0.819193	2.307839e-52	4.969129e-50
MsaG006504	MsaG016117	0.806615	1.280013e-49	2.015613e-47
MsaG007026	MsaG016117	0.804583	3.400330e-49	5.105424e-47
MsaG007074	MsaG016117	0.803075	6.973382e-49	1.011098e-46
MsaG007077	MsaG016117	0.811692	1.058227e-50	1.883458e-48
MsaG007308	MsaG016117	0.817434	5.751439e-52	1.183101e-49
MsaG008080	MsaG016117	0.811077	1.436938e-50	2.519238e-48
MsaG008330	MsaG016117	0.828084	1.956592e-54	5.363099e-52
MsaG009004	MsaG016117	0.820219	1.349005e-52	2.984401e-50
MsaG009891	MsaG016117	0.805941	1.772426e-49	2.746742e-47
MsaG010028	MsaG016117	0.819866	1.623417e-52	3.557778e-50
MsaG010288	MsaG016117	0.802053	1.130097e-48	1.600601e-46
MsaG010302	MsaG016117	0.800064	2.869516e-48	3.885391e-46
MsaG010635	MsaG016117	0.812641	6.584437e-51	1.199705e-48
MsaG010757	MsaG016117	0.812845	5.944286e-51	1.088593e-48
MsaG010799	MsaG016117	0.827973	2.079826e-54	5.683338e-52
MsaG011049	MsaG016117	0.817996	4.301063e-52	8.976563e-50
MsaG011407	MsaG016117	0.824400	1.459233e-53	3.611069e-51
MsaG011539	MsaG016117	0.836563	1.590976e-56	5.585039e-54
MsaG011454	MsaG016117	0.833232	1.088115e-55	3.458640e-53
MsaG011621	MsaG016117	0.807804	7.188787e-50	1.164370e-47
MsaG012013	MsaG016117	0.800506	2.334616e-48	3.192823e-46
MsaG012048	MsaG016117	0.811026	1.473362e-50	2.579897e-48
MsaG012083	MsaG016117	0.800042	2.899083e-48	3.923411e-46
MsaG012310	MsaG016117	0.810229	2.186874e-50	3.755474e-48
MsaG012425	MsaG016117	0.849883	4.621602e-60	2.494611e-57
MsaG012470	MsaG016117	0.822883	3.291911e-53	7.818049e-51
MsaG012891	MsaG016117	0.829495	8.948021e-55	2.552489e-52
MsaG013627	MsaG016117	0.803592	5.455414e-49	8.005019e-47
MsaG013628	MsaG016117	0.840542	1.510846e-57	5.999284e-55
MsaG014135	MsaG016117	0.802098	1.106382e-48	1.568606e-46
MsaG014640	MsaG016117	0.809319	3.425164e-50	5.753446e-48
MsaG014651	MsaG016117	0.824279	1.557457e-53	3.841422e-51
MsaG014652	MsaG016117	0.808792	4.435702e-50	7.357444e-48
MsaG014655	MsaG016117	0.822013	5.232661e-53	1.213915e-50
MsaG014667	MsaG016117	0.802770	8.056194e-49	1.159902e-46
MsaG014961	MsaG016117	0.805917	1.792865e-49	2.776836e-47
MsaG015352	MsaG016117	0.806604	1.286620e-49	2.025494e-47
MsaG015820	MsaG016117	0.806854	1.139978e-49	1.805138e-47
MsaG016116	MsaG016117	0.905309	1.160946e-79	8.146828e-76
MsaG016117	MsaG016118	0.803329	6.181856e-49	9.015894e-47
MsaG016117	MsaG016228	0.813699	3.867205e-51	7.235073e-49
MsaG016117	MsaG016229	0.810180	2.240024e-50	3.842110e-48
MsaG016117	MsaG016459	0.807525	8.234370e-50	1.324819e-47
MsaG016117	MsaG017148	0.843266	2.904414e-58	1.257855e-55
MsaG016117	MsaG017179	0.809927	2.538329e-50	4.327101e-48
MsaG016117	MsaG017278	0.821240	7.880247e-53	1.790970e-50
MsaG016117	MsaG017288	0.816731	8.258307e-52	1.668256e-49
MsaG016117	MsaG017608	0.812396	7.441753e-51	1.347725e-48
MsaG016117	MsaG017825	0.847008	2.861886e-59	1.401775e-56
MsaG016117	MsaG017849	0.804901	2.920377e-49	4.417350e-47
MsaG016117	MsaG017867	0.808749	4.530056e-50	7.506505e-48
MsaG016117	MsaG018148	0.800977	1.873605e-48	2.589634e-46
MsaG016117	MsaG018501	0.823129	2.887511e-53	6.903110e-51
MsaG016117	MsaG018705	0.810730	1.706868e-50	2.967158e-48
MsaG016117	MsaG019012	0.803808	4.921285e-49	7.257616e-47
MsaG016117	MsaG019353	0.821252	7.828214e-53	1.779753e-50
MsaG016117	MsaG019547	0.806174	1.583970e-49	2.468299e-47
MsaG016117	MsaG019582	0.808650	4.754620e-50	7.859623e-48
MsaG016117	MsaG019616	0.819030	2.513393e-52	5.388476e-50
MsaG016117	MsaG020337	0.806779	1.182559e-49	1.869311e-47
MsaG016117	MsaG020778	0.822256	4.598201e-53	1.073691e-50
MsaG016117	MsaG021165	0.814982	2.018832e-51	3.900882e-49
MsaG016117	MsaG021264	0.811047	1.458324e-50	2.554870e-48
MsaG016117	MsaG021180	0.834082	6.690637e-56	2.180287e-53
MsaG016117	MsaG022323	0.809040	3.927601e-50	6.553757e-48
MsaG016117	MsaG022553	0.805857	1.845487e-49	2.854294e-47
MsaG016117	MsaG022600	0.829150	1.083992e-54	3.061594e-52
MsaG016117	MsaG023214	0.800969	1.880365e-48	2.598543e-46
MsaG016117	MsaG023749	0.809303	3.452074e-50	5.796490e-48
MsaG016117	MsaG024311	0.833338	1.024114e-55	3.265131e-53
MsaG016117	MsaG026675	0.803721	5.131074e-49	7.551779e-47
MsaG016117	MsaG027142	0.806270	1.512347e-49	2.362133e-47
MsaG016117	MsaG027500	0.846110	5.017256e-59	2.385029e-56
MsaG016117	MsaG028483	0.812356	7.594709e-51	1.374054e-48
MsaG016117	MsaG028522	0.817153	6.646171e-52	1.357312e-49
MsaG016117	MsaG028627	0.810694	1.737414e-50	3.017586e-48
MsaG016117	MsaG028773	0.810263	2.150474e-50	3.696008e-48
MsaG016117	MsaG028988	0.841068	1.101963e-57	4.448807e-55
MsaG016117	MsaG029064	0.800589	2.245601e-48	3.076920e-46
MsaG016117	MsaG029128	0.819900	1.595123e-52	3.498872e-50
MsaG016117	MsaG030113	0.803504	5.688568e-49	8.330083e-47
MsaG016117	MsaG030901	0.836405	1.744231e-56	6.094534e-54
MsaG016117	MsaG031216	0.812835	5.973972e-51	1.093761e-48
MsaG016117	MsaG031752	0.830708	4.542408e-55	1.341400e-52
MsaG016117	MsaG032095	0.813496	4.283872e-51	7.973883e-49
MsaG016117	MsaG032036	0.800745	2.088162e-48	2.871274e-46
MsaG016117	MsaG032401	0.802958	7.370300e-49	1.065754e-46
MsaG016117	MsaG032424	0.821707	6.155870e-53	1.416487e-50
MsaG016117	MsaG032927	0.819766	1.710446e-52	3.738489e-50
MsaG016117	MsaG033154	0.806416	1.409435e-49	2.209008e-47
MsaG016117	MsaG033794	0.814869	2.138609e-51	4.120534e-49
MsaG016117	MsaG033897	0.848758	9.476078e-60	4.922714e-57
MsaG016117	MsaG035166	0.831193	3.457152e-55	1.035298e-52
MsaG016117	MsaG039393	0.846894	3.073580e-59	1.499691e-56
MsaG016117	MsaG040482	0.806212	1.555329e-49	2.425925e-47
MsaG016117	MsaG041735	0.812796	6.091440e-51	1.114183e-48
MsaG016117	MsaG041771	0.816092	1.146381e-51	2.278190e-49
MsaG016117	MsaG041812	0.803668	5.259945e-49	7.731988e-47
MsaG016117	MsaG041814	0.808935	4.134420e-50	6.881462e-48
MsaG016117	MsaG041834	0.838587	4.844140e-57	1.809290e-54
MsaG016117	MsaG042105	0.849341	6.533333e-60	3.462358e-57
MsaG016117	MsaG042748	0.827621	2.524900e-54	6.831735e-52
MsaG016117	MsaG042856	0.811769	1.018029e-50	1.815349e-48
MsaG016117	MsaG043229	0.813345	4.622009e-51	8.570820e-49
MsaG016117	MsaG044570	0.812074	8.743978e-51	1.570895e-48
MsaG016117	MsaG044581	0.806766	1.189901e-49	1.880352e-47
MsaG016117	MsaG044630	0.805728	1.963544e-49	3.027770e-47
MsaG016117	MsaG045234	0.811636	1.087911e-50	1.933620e-48
MsaG016117	MsaG045454	0.802726	8.222550e-49	1.182683e-46
MsaG016117	MsaG045456	0.800121	2.793631e-48	3.787416e-46
MsaG016117	MsaG045556	0.818458	3.383713e-52	7.146613e-50
MsaG016117	MsaG045748	0.832928	1.293807e-55	4.075721e-53
MsaG016117	MsaG045909	0.852735	7.286741e-61	4.343426e-58
MsaG016117	MsaG046275	0.821521	6.793148e-53	1.555402e-50
MsaG016117	MsaG046600	0.810757	1.683996e-50	2.929374e-48
MsaG016117	MsaG046957	0.821788	5.896373e-53	1.359648e-50
MsaG016117	MsaG001871	0.827882	2.187299e-54	5.961690e-52
MsaG016117	MsaG002683	0.813601	4.063384e-51	7.583545e-49
MsaG016117	MsaG001311	0.803689	5.208442e-49	7.659889e-47
MsaG016117	MsaG003314	0.801372	1.556876e-48	2.171216e-46
MsaG016117	MsaG008748	0.803390	6.005151e-49	8.770755e-47
MsaG016117	MsaG009167	0.811408	1.218513e-50	2.153718e-48
MsaG016117	MsaG007925	0.810811	1.639653e-50	2.855982e-48
MsaG016117	MsaG008213	0.831576	2.785707e-55	8.436447e-53
MsaG016117	MsaG006540	0.825250	9.215916e-54	2.334207e-51
MsaG016117	MsaG007976	0.858588	1.453337e-62	1.071261e-59
MsaG016117	MsaG013515	0.805128	2.619363e-49	3.983017e-47
MsaG016117	MsaG013040	0.819793	1.686912e-52	3.689695e-50
MsaG016117	MsaG011544	0.805555	2.134441e-49	3.277842e-47
MsaG016117	MsaG012608	0.829540	8.727469e-55	2.492743e-52
MsaG016117	MsaG014424	0.811833	9.860387e-51	1.761112e-48
MsaG016117	MsaG012090	0.812974	5.570292e-51	1.023410e-48
MsaG016117	MsaG019521	0.831990	2.204408e-55	6.757276e-53
MsaG016117	MsaG023034	0.837561	8.867786e-57	3.208889e-54
MsaG016117	MsaG018389	0.860666	3.468186e-63	2.766304e-60
MsaG016117	MsaG019826	0.809155	3.711978e-50	6.211008e-48
MsaG016117	MsaG019500	0.829273	1.012717e-54	2.870275e-52
MsaG016117	MsaG028085	0.827204	3.174850e-54	8.490293e-52
MsaG016117	MsaG028048	0.851698	1.433371e-60	8.237904e-58
MsaG016117	MsaG027785	0.841875	6.766950e-58	2.803026e-55
MsaG016117	MsaG027659	0.819907	1.589391e-52	3.486951e-50
MsaG016117	MsaG033538	0.850676	2.775345e-60	1.539644e-57
MsaG016117	MsaG034617	0.839657	2.564439e-57	9.903601e-55
MsaG016117	MsaG033169	0.808599	4.875782e-50	8.049721e-48
MsaG016117	MsaG030191	0.818571	3.191779e-52	6.760959e-50
MsaG016117	MsaG033505	0.800281	2.593087e-48	3.528287e-46
MsaG016117	MsaG034182	0.838566	4.904472e-57	1.830660e-54
MsaG016117	MsaG031899	0.823194	2.788582e-53	6.678455e-51
MsaG016117	MsaG032721	0.807334	9.034888e-50	1.446989e-47
MsaG016117	MsaG031412	0.804132	4.217524e-49	6.266742e-47
MsaG016117	MsaG035260	0.823893	1.916528e-53	4.677705e-51
MsaG016117	MsaG038165	0.828322	1.715812e-54	4.734714e-52
MsaG016117	MsaG042570	0.807878	6.932524e-50	1.124908e-47
MsaG016117	MsaG043042	0.801196	1.690356e-48	2.347983e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016117	MtrunA17_Chr1g0169171	71.533	274	58	4	34	305	1	256	3.32e-119	348
MsaG016117	MtrunA17_Chr1g0169161	61.564	307	97	3	1	305	1	288	2.93e-105	314
MsaG016117	MtrunA17_Chr3g0125161	88.430	121	14	0	2	122	13	133	1.18e-70	219
MsaG016117	MtrunA17_Chr3g0125151	92.405	79	6	0	227	305	1	79	5.74e-49	162
MsaG016117	MtrunA17_Chr1g0169081	72.222	108	30	0	5	112	2	109	1.24e-43	154

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTTCATCATCTTCAAGTTT+TGG	0.269280	3:+94313434	None:intergenic
GCATAGAAGTATGGATTTCC+TGG	0.326303	3:+94313389	None:intergenic
AGAGAGGAGAAATACGTAAA+TGG	0.332365	3:-94312832	MsaT016117.1:CDS
ACTTTCCCGGCGGTGGAAAC+GGG	0.333345	3:-94311438	MsaT016117.1:CDS
AACTTTCCCGGCGGTGGAAA+CGG	0.347641	3:-94311439	MsaT016117.1:CDS
CAGAGAAGAAAATTCATTAG+AGG	0.353395	3:-94313961	MsaT016117.1:CDS
TGCCATATTGCGTGTCCGCC+TGG	0.359320	3:+94311598	None:intergenic
ATGAGCTTCACAAAAGCAAT+TGG	0.382357	3:+94314104	None:intergenic
AGCTCAGACGGAGGCGGTGG+TGG	0.386990	3:-94311562	MsaT016117.1:CDS
CGCGTCAAAGCACATTCAAT+TGG	0.401347	3:-94314020	MsaT016117.1:CDS
TATGTTGGAGGATGAGGAAG+AGG	0.406388	3:-94313823	MsaT016117.1:CDS
ACTTTCCTAGTGGTGGTAAA+GGG	0.412711	3:-94311528	MsaT016117.1:CDS
GGCCAGGCGGACACGCAATA+TGG	0.417457	3:-94311600	MsaT016117.1:CDS
GTCATAAACTTTCCCGGCGG+TGG	0.417743	3:-94311445	MsaT016117.1:CDS
TAATAATATGTTGGAGGATG+AGG	0.419640	3:-94313829	MsaT016117.1:CDS
ACATTACAGACCCAACGAAT+TGG	0.430909	3:-94313363	MsaT016117.1:intron
AACTTTCCTAGTGGTGGTAA+AGG	0.439112	3:-94311529	MsaT016117.1:CDS
GTGTTGATGGCTATATAGTT+TGG	0.439892	3:-94311621	MsaT016117.1:CDS
GTATGTGTTGTGTTGATTTG+TGG	0.448016	3:+94312860	None:intergenic
GCAAATGTCATAAACTTTCC+CGG	0.460290	3:-94311451	MsaT016117.1:CDS
CCTTGCAGTGGCAACATACA+AGG	0.465539	3:+94313039	None:intergenic
GATTGTGGTTTAGGGAGCAT+TGG	0.466163	3:-94313473	MsaT016117.1:intron
GCCTCCGTCTGAGCTTCCAC+TGG	0.480136	3:+94311570	None:intergenic
AAGAACTAAACCAATTCGTT+GGG	0.487807	3:+94313353	None:intergenic
ATGAAAGCAGAAAAGAAGAA+AGG	0.488071	3:-94313645	MsaT016117.1:CDS
AAAGAACTAAACCAATTCGT+TGG	0.488811	3:+94313352	None:intergenic
CTCTTCCTCTATGATCCCTT+AGG	0.492258	3:+94314048	None:intergenic
TTGTGGCAATATGTGATGAT+AGG	0.496982	3:+94312877	None:intergenic
GGAGGAAAATAATAATATGT+TGG	0.500575	3:-94313838	MsaT016117.1:CDS
TCTCATAATGCTTCTCTATG+AGG	0.504327	3:+94314318	None:intergenic
GGAAGCTCAGACGGAGGCGG+TGG	0.504416	3:-94311565	MsaT016117.1:CDS
GGGATCATAGAGGAAGAGAT+TGG	0.510517	3:-94314043	MsaT016117.1:CDS
CTTTCCCGGCGGTGGAAACG+GGG	0.511813	3:-94311437	MsaT016117.1:CDS
ATCATAAACTTTCCTAGTGG+TGG	0.514983	3:-94311535	MsaT016117.1:CDS
AAGCACATTCAATTGGTGGC+AGG	0.516729	3:-94314013	MsaT016117.1:CDS
AATGGTAGAGGAAGAAGAAG+AGG	0.518113	3:-94313745	MsaT016117.1:CDS
AAGAAGAAAGGAGTTGACAA+GGG	0.522584	3:-94313633	MsaT016117.1:CDS
GAAATACGTAAATGGAAAGA+TGG	0.523151	3:-94312824	MsaT016117.1:intron
AGAGAAGCATTATGAGAGAA+TGG	0.527328	3:-94314312	MsaT016117.1:intron
GGAAAATAATAATATGTTGG+AGG	0.527415	3:-94313835	MsaT016117.1:CDS
GATGGCTATATAGTTTGGCC+AGG	0.530422	3:-94311616	MsaT016117.1:CDS
GAAGAGGAAGAAGATGAAGA+TGG	0.532114	3:-94313729	MsaT016117.1:CDS
GTTGAAATGTATATTCAGCC+AGG	0.532204	3:-94313407	MsaT016117.1:CDS
ACCAGTGGAAGCTCAGACGG+AGG	0.532231	3:-94311571	MsaT016117.1:CDS
TTGGAGGATGAGGAAGAGGA+AGG	0.540476	3:-94313819	MsaT016117.1:CDS
TGAAGACGATGATGAGGATG+AGG	0.541376	3:-94313694	MsaT016117.1:CDS
AAAGAAGAAAGGAGTTGACA+AGG	0.542225	3:-94313634	MsaT016117.1:CDS
GAGGGACATAAGTCAAGCGT+TGG	0.544112	3:-94311394	MsaT016117.1:CDS
TGAGCTTCACAAAAGCAATT+GGG	0.545679	3:+94314105	None:intergenic
GTCAAAGCACATTCAATTGG+TGG	0.546694	3:-94314017	MsaT016117.1:CDS
AGCACCAGTGGAAGCTCAGA+CGG	0.551410	3:-94311574	MsaT016117.1:CDS
AAAGACAAAGGTAATGGATG+AGG	0.553323	3:-94313859	MsaT016117.1:CDS
TTTCAATATGTGTGAAAACA+AGG	0.554136	3:+94313928	None:intergenic
GACAAAGGTAATGGATGAGG+AGG	0.556485	3:-94313856	MsaT016117.1:CDS
GAGGAACACCTTGGCAGTGT+TGG	0.557953	3:+94314358	None:intergenic
ATTTGTAGTTGGTGAGACAC+AGG	0.559962	3:-94311662	MsaT016117.1:intron
AGCTCATGCTTTCGAAACAA+AGG	0.561664	3:-94314088	MsaT016117.1:CDS
GGAAGACTTTGAAGAAGTTG+AGG	0.564880	3:+94314339	None:intergenic
GCTCATGCTTTCGAAACAAA+GGG	0.566004	3:-94314087	MsaT016117.1:CDS
CCTTGTATGTTGCCACTGCA+AGG	0.576526	3:-94313039	MsaT016117.1:intron
AGTGGAAGCTCAGACGGAGG+CGG	0.576659	3:-94311568	MsaT016117.1:CDS
CTTTCCTAGTGGTGGTAAAG+GGG	0.585504	3:-94311527	MsaT016117.1:CDS
GATGATGATGATGGTGATGG+TGG	0.586203	3:-94313795	MsaT016117.1:CDS
TTTCCTAGTGGTGGTAAAGG+GGG	0.588254	3:-94311526	MsaT016117.1:CDS
GGCTATATAGTTTGGCCAGG+CGG	0.594243	3:-94311613	MsaT016117.1:CDS
GAAGAAGTTGAGGAACACCT+TGG	0.598409	3:+94314349	None:intergenic
CGACGGTTATACAATGGTAG+AGG	0.603192	3:-94313757	MsaT016117.1:CDS
TTTCCCGGCGGTGGAAACGG+GGG	0.606258	3:-94311436	MsaT016117.1:CDS
TGATATGCTTTGTAAAGCAA+AGG	0.607441	3:+94313063	None:intergenic
TTTATCCTAAGGGATCATAG+AGG	0.616153	3:-94314053	MsaT016117.1:CDS
AATTATGACCAACACTGCCA+AGG	0.625272	3:-94314366	None:intergenic
TGATGATGAAGACGATGATG+AGG	0.632639	3:-94313700	MsaT016117.1:CDS
GCAATATGGCAAAGCACCAG+TGG	0.640117	3:-94311586	MsaT016117.1:CDS
GAAGAAGATGAAGATGGTGA+TGG	0.640201	3:-94313723	MsaT016117.1:CDS
GAGGAAGGTGATGATGATGA+TGG	0.640863	3:-94313804	MsaT016117.1:CDS
ATAACAATTATACCTTGCAG+TGG	0.648271	3:+94313027	None:intergenic
CCCGGAAGTGGAAAACGGGG+TGG	0.655848	3:-94311478	MsaT016117.1:CDS
GGTGATGATGATGATGGTGA+TGG	0.656321	3:-94313798	MsaT016117.1:CDS
ACAACACATACCGAAAAGAG+AGG	0.656927	3:-94312848	MsaT016117.1:CDS
ATTATCATAAACTTTCCTAG+TGG	0.664481	3:-94311538	MsaT016117.1:CDS
CTTGCAGTGGCAACATACAA+GGG	0.670891	3:+94313040	None:intergenic
TTTCCCGGAAGTGGAAAACG+GGG	0.695053	3:-94311481	MsaT016117.1:CDS
TGACGACGACGGTTATACAA+TGG	0.701620	3:-94313763	MsaT016117.1:CDS
GGAGATGATGATGACGACGA+CGG	0.751131	3:-94313774	MsaT016117.1:CDS
AATGTCATAAACTTTCCCGG+CGG	0.795660	3:-94311448	MsaT016117.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	94311372	94314384	94311372	ID=MsaG016117
Chr3	mRNA	94311372	94314384	94311372	ID=MsaT016117.1;Parent=MsaG016117
Chr3	exon	94311372	94311676	94311372	ID=MsaT016117.1.exon6;Parent=MsaT016117.1
Chr3	CDS	94311372	94311676	94311372	ID=cds.MsaT016117.1;Parent=MsaT016117.1
Chr3	exon	94312825	94312924	94312825	ID=MsaT016117.1.exon5;Parent=MsaT016117.1
Chr3	CDS	94312825	94312924	94312825	ID=cds.MsaT016117.1;Parent=MsaT016117.1
Chr3	exon	94313040	94313117	94313040	ID=MsaT016117.1.exon4;Parent=MsaT016117.1
Chr3	CDS	94313040	94313117	94313040	ID=cds.MsaT016117.1;Parent=MsaT016117.1
Chr3	exon	94313364	94313482	94313364	ID=MsaT016117.1.exon3;Parent=MsaT016117.1
Chr3	CDS	94313364	94313482	94313364	ID=cds.MsaT016117.1;Parent=MsaT016117.1
Chr3	exon	94313586	94314132	94313586	ID=MsaT016117.1.exon2;Parent=MsaT016117.1
Chr3	CDS	94313586	94314132	94313586	ID=cds.MsaT016117.1;Parent=MsaT016117.1
Chr3	exon	94314313	94314384	94314313	ID=MsaT016117.1.exon1;Parent=MsaT016117.1
Chr3	CDS	94314313	94314384	94314313	ID=cds.MsaT016117.1;Parent=MsaT016117.1

Gene Sequence

>MsaT016117.1

ATGACCAACACTGCCAAGGTGTTCCTCAACTTCTTCAAAGTCTTCCTCATAGAGAAGCATTATGAGAGAATGCTTATCCCAATTGCTTTTGTGAAGCTCATGCTTTCGAAACAAAGGGTATTGCAATATTTTATCCTAAGGGATCATAGAGGAAGAGATTGGCGCGTCAAAGCACATTCAATTGGTGGCAGGCTTTATTTTGATGATGGTTGGAAACTATTCAGAGAAGAAAATTCATTAGAGGACAGTGACTTCCTTGTTTTCACACATATTGAAAACAATGTATTCAAGTTCAAAATTCTTGAACTATCATCAATGTGTAAAAAGACAAAGGTAATGGATGAGGAGGAAAATAATAATATGTTGGAGGATGAGGAAGAGGAAGGTGATGATGATGATGGTGATGGTGGAGATGATGATGACGACGACGGTTATACAATGGTAGAGGAAGAAGAAGAGGAAGAAGATGAAGATGGTGATGGTGATGATGAAGACGATGATGAGGATGAGGATGCTGATGATGATGTGCATATAATAATGAAAGCAGAAAAGAAGAAAGGAGTTGACAAGGGAATCAGTAGAAGCTGTGAACATCAACATTGTAGAACCTTCAAAGCATGGAGCATTGGAAGCAGCTCTGCAGCTCCAAAACTTGAAGATGATGAAATTGATGTTGAAATGTATATTCAGCCAGGAAATCCATACTTCTATGCAAAACATTACAGACCCAACGAATTGTATATTTTAAAGAATGTTGTTAAGGATTTCTGCCTTTGCTTTACAAAGCATATCACCCTTGTATGTTGCCACTGCAAGGATGTTCGAAGTAATGAAAGAGCAGCCTATCATCACATATTGCCACAAATCAACACAACACATACCGAAAAGAGAGGAGAAATACGTAAATGGAAAGATGTTGGTGAGACACAGGAATCAAAGATAAAAATTGGTGTTGATGGCTATATAGTTTGGCCAGGCGGACACGCAATATGGCAAAGCACCAGTGGAAGCTCAGACGGAGGCGGTGGTGGAATTATCATAAACTTTCCTAGTGGTGGTAAAGGGGGTGGAGGTGGAAACATCATAATTTTTCCCGGAAGTGGAAAACGGGGTGGTCGTGCAAATGTCATAAACTTTCCCGGCGGTGGAAACGGGGGAGGCGGAGGAAAAATAAATGAGGGACATAAGTCAAGCGTTGGAAAAGCCTTCATAAAAACCTAA

Protein sequence

>MsaT016117.1

MTNTAKVFLNFFKVFLIEKHYERMLIPIAFVKLMLSKQRVLQYFILRDHRGRDWRVKAHSIGGRLYFDDGWKLFREENSLEDSDFLVFTHIENNVFKFKILELSSMCKKTKVMDEEENNNMLEDEEEEGDDDDGDGGDDDDDDGYTMVEEEEEEEDEDGDGDDEDDDEDEDADDDVHIIMKAEKKKGVDKGISRSCEHQHCRTFKAWSIGSSSAAPKLEDDEIDVEMYIQPGNPYFYAKHYRPNELYILKNVVKDFCLCFTKHITLVCCHCKDVRSNERAAYHHILPQINTTHTEKRGEIRKWKDVGETQESKIKIGVDGYIVWPGGHAIWQSTSGSSDGGGGGIIINFPSGGKGGGGGNIIIFPGSGKRGGRANVINFPGGGNGGGGGKINEGHKSSVGKAFIKT*