AlfalfaGEDB | MsaG016126

M. sativa ssp. caerulea / MsaG016126

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016126	AIT11843.1	99.448	181	1	0	1	181	1	181	6.15e-128	367

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016126	sp\|Q0HA25\|MADS9_VITVI	72.881	177	46	2	1	176	1	176	5.82e-91	267

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016126	A0A097EU04	99.448	181	1	0	1	181	1	181	2.94e-128	367

TFs/TRs:

Gene ID	Type	Classification
MsaG016126	TF	MADS-MIKC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000534	MsaG016126	0.813820	3.637702e-51	6.826749e-49
MsaG001169	MsaG016126	0.805833	1.866739e-49	2.885600e-47
MsaG001366	MsaG016126	0.804679	3.249119e-49	4.889219e-47
MsaG002735	MsaG016126	0.812076	8.733118e-51	1.569038e-48
MsaG002889	MsaG016126	0.814307	2.844229e-51	5.403062e-49
MsaG003679	MsaG016126	0.806693	1.232567e-49	1.944447e-47
MsaG004146	MsaG016126	0.823896	1.913996e-53	4.671869e-51
MsaG004410	MsaG016126	0.823856	1.955066e-53	4.767006e-51
MsaG005010	MsaG016126	0.806704	1.226082e-49	1.934690e-47
MsaG005880	MsaG016126	0.803311	6.233099e-49	9.086968e-47
MsaG006257	MsaG016126	0.807265	9.343118e-50	1.493851e-47
MsaG006837	MsaG016126	0.807485	8.395696e-50	1.349460e-47
MsaG006863	MsaG016126	0.811772	1.016732e-50	1.813156e-48
MsaG006886	MsaG016126	0.834975	4.000144e-56	1.338885e-53
MsaG007070	MsaG016126	0.817103	6.821525e-52	1.391307e-49
MsaG007600	MsaG016126	0.803630	5.358315e-49	7.869330e-47
MsaG008112	MsaG016126	0.833531	9.174662e-56	2.941768e-53
MsaG008250	MsaG016126	0.819348	2.128950e-52	4.602725e-50
MsaG008434	MsaG016126	0.820835	9.755748e-53	2.193473e-50
MsaG008631	MsaG016126	0.800145	2.763614e-48	3.748713e-46
MsaG009185	MsaG016126	0.802257	1.026585e-48	1.460777e-46
MsaG010372	MsaG016126	0.832501	1.649763e-55	5.132594e-53
MsaG011225	MsaG016126	0.801216	1.674344e-48	2.326773e-46
MsaG011248	MsaG016126	0.825860	6.618226e-54	1.704930e-51
MsaG011405	MsaG016126	0.804144	4.194916e-49	6.234782e-47
MsaG012216	MsaG016126	0.826651	4.299778e-54	1.132246e-51
MsaG012553	MsaG016126	0.812781	6.137079e-51	1.122117e-48
MsaG012586	MsaG016126	0.817427	5.770160e-52	1.186761e-49
MsaG012772	MsaG016126	0.801886	1.222255e-48	1.724653e-46
MsaG016126	MsaG017771	0.804165	4.151814e-49	6.173816e-47
MsaG016126	MsaG018060	0.805515	2.175250e-49	3.337439e-47
MsaG016126	MsaG019571	0.812000	9.075358e-51	1.627519e-48
MsaG016126	MsaG020787	0.810070	2.365873e-50	4.047111e-48
MsaG016126	MsaG021477	0.800783	2.051004e-48	2.822645e-46
MsaG016126	MsaG021485	0.802244	1.032504e-48	1.468771e-46
MsaG016126	MsaG023205	0.810800	1.648753e-50	2.871061e-48
MsaG016126	MsaG024009	0.811416	1.214085e-50	2.146296e-48
MsaG016126	MsaG026868	0.833229	1.089880e-55	3.463948e-53
MsaG016126	MsaG028020	0.825785	6.892396e-54	1.771812e-51
MsaG016126	MsaG028250	0.807368	8.886846e-50	1.424427e-47
MsaG016126	MsaG028825	0.820696	1.050035e-52	2.352166e-50
MsaG016126	MsaG029482	0.808324	5.576559e-50	9.145965e-48
MsaG016126	MsaG029626	0.841425	8.885384e-58	3.628039e-55
MsaG016126	MsaG034418	0.815337	1.685353e-51	3.285864e-49
MsaG016126	MsaG034667	0.820898	9.438911e-53	2.125867e-50
MsaG016126	MsaG034673	0.808134	6.117657e-50	9.987852e-48
MsaG016126	MsaG035008	0.816179	1.095998e-51	2.182993e-49
MsaG016126	MsaG038043	0.809274	3.501347e-50	5.875167e-48
MsaG016126	MsaG040836	0.801897	1.215878e-48	1.716086e-46
MsaG016126	MsaG042116	0.804837	3.011320e-49	4.548225e-47
MsaG016126	MsaG042510	0.821681	6.238714e-53	1.434579e-50
MsaG016126	MsaG043881	0.824844	1.148496e-53	2.876696e-51
MsaG016126	MsaG044445	0.820938	9.239713e-53	2.083288e-50
MsaG016126	MsaG044880	0.823411	2.482670e-53	5.980831e-51
MsaG016126	MsaG045536	0.819787	1.692457e-52	3.701195e-50
MsaG016126	MsaG013008	0.802042	1.136076e-48	1.608668e-46
MsaG016126	MsaG012824	0.801709	1.328674e-48	1.867184e-46
MsaG016126	MsaG015242	0.806200	1.564466e-49	2.439458e-47
MsaG016126	MsaG011633	0.825200	9.471243e-54	2.395592e-51
MsaG016126	MsaG021945	0.803983	4.528389e-49	6.705271e-47
MsaG016126	MsaG019873	0.801560	1.425232e-48	1.996078e-46
MsaG016126	MsaG030982	0.808486	5.152491e-50	8.483598e-48
MsaG016126	MsaG033058	0.821552	6.682313e-53	1.531289e-50
MsaG016126	MsaG033283	0.822006	5.252635e-53	1.218322e-50
MsaG016126	MsaG035313	0.801948	1.187315e-48	1.677643e-46
MsaG016126	MsaG042966	0.810581	1.837202e-50	3.182184e-48
MsaG016126	MsaG042525	0.813440	4.406580e-51	8.191021e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016126	MtrunA17_Chr3g0125241	98.895	181	2	0	1	181	26	206	9.35e-132	367
MsaG016126	MtrunA17_Chr1g0159661	73.889	180	42	2	1	180	1	175	9.34e-93	268
MsaG016126	MtrunA17_Chr3g0142191	46.479	142	76	0	1	142	1	142	2.58e-44	146
MsaG016126	MtrunA17_Chr5g0404951	47.945	146	72	2	1	142	1	146	3.40e-41	138
MsaG016126	MtrunA17_Chr8g0351051	46.259	147	72	2	1	142	1	145	3.94e-38	131
MsaG016126	MtrunA17_Chr1g0164791	37.356	174	95	3	1	161	1	173	2.49e-35	123
MsaG016126	MtrunA17_Chr2g0284911	44.898	147	74	3	1	142	16	160	4.11e-35	124
MsaG016126	MtrunA17_Chr3g0077501	44.218	147	75	2	1	142	1	145	5.99e-35	122
MsaG016126	MtrunA17_Chr7g0220121	40.719	167	91	3	1	160	1	166	7.49e-35	123
MsaG016126	MtrunA17_Chr4g0061691	45.578	147	74	2	1	142	1	146	8.03e-35	122
MsaG016126	MtrunA17_Chr3g0097101	44.218	147	75	2	1	142	16	160	1.06e-34	122
MsaG016126	MtrunA17_Chr8g0366231	46.939	147	72	3	1	142	1	146	1.19e-34	122
MsaG016126	MtrunA17_Chr5g0420081	45.578	147	74	3	1	142	1	146	4.38e-34	120
MsaG016126	MtrunA17_Chr7g0220111	44.521	146	76	2	1	142	1	145	6.22e-34	120
MsaG016126	MtrunA17_Chr6g0455511	45.205	146	75	2	1	142	1	145	6.79e-34	120
MsaG016126	MtrunA17_Chr6g0474371	41.781	146	78	2	1	140	1	145	4.11e-33	116
MsaG016126	MtrunA17_Chr8g0380021	41.497	147	79	2	1	142	17	161	8.94e-33	117
MsaG016126	MtrunA17_Chr2g0279821	41.420	169	89	4	1	161	1	167	9.32e-33	117
MsaG016126	MtrunA17_Chr4g0061671	43.056	144	78	2	1	141	1	143	1.04e-32	115
MsaG016126	MtrunA17_Chr5g0411691	38.674	181	98	4	1	170	1	179	3.20e-32	115
MsaG016126	MtrunA17_Chr8g0351031	37.634	186	101	5	1	179	1	178	6.57e-32	114
MsaG016126	MtrunA17_Chr3g0122251	39.326	178	95	5	1	168	1	175	1.20e-31	114
MsaG016126	MtrunA17_Chr5g0420091	39.726	146	82	2	1	141	1	145	8.39e-31	111
MsaG016126	MtrunA17_Chr7g0246431	39.597	149	83	3	1	144	1	147	1.39e-30	110
MsaG016126	MtrunA17_Chr5g0412271	44.509	173	77	7	1	160	1	167	1.49e-30	111
MsaG016126	MtrunA17_Chr5g0412461	38.624	189	97	5	1	178	1	181	1.86e-30	110
MsaG016126	MtrunA17_Chr8g0351041	41.060	151	79	4	1	144	1	148	2.82e-30	108
MsaG016126	MtrunA17_Chr5g0427401	41.081	185	88	8	1	174	1	175	3.09e-30	110
MsaG016126	MtrunA17_Chr4g0057151	40.588	170	88	5	1	160	1	167	3.38e-30	109
MsaG016126	MtrunA17_Chr4g0049541	37.853	177	84	7	1	161	1	167	5.96e-29	107
MsaG016126	MtrunA17_Chr1g0204111	40.136	147	80	3	1	141	17	161	7.01e-28	104
MsaG016126	MtrunA17_Chr4g0018421	37.162	148	86	2	1	142	1	147	3.03e-27	102
MsaG016126	MtrunA17_Chr4g0020221	41.611	149	78	3	1	142	1	147	1.35e-25	99.0
MsaG016126	MtrunA17_Chr1g0173161	63.235	68	22	1	1	68	1	65	1.03e-24	92.0
MsaG016126	MtrunA17_Chr7g0246381	61.290	62	24	0	1	62	1	62	5.36e-24	89.7
MsaG016126	MtrunA17_Chr4g0049901	38.922	167	90	4	1	160	27	188	7.73e-24	94.0
MsaG016126	MtrunA17_Chr2g0308251	59.701	67	27	0	1	67	1	67	3.97e-23	87.8
MsaG016126	MtrunA17_Chr5g0427921	56.667	60	26	0	1	60	1	60	4.20e-23	87.0
MsaG016126	MtrunA17_Chr8g0377561	64.912	57	20	0	1	57	1	57	6.88e-23	87.8
MsaG016126	MtrunA17_Chr4g0044071	59.649	57	23	0	1	57	1	57	2.38e-20	81.6
MsaG016126	MtrunA17_Chr5g0425191	57.895	57	24	0	1	57	1	57	5.89e-20	80.1
MsaG016126	MtrunA17_Chr3g0134451	54.930	71	31	1	1	71	1	70	8.69e-19	82.0
MsaG016126	MtrunA17_Chr8g0379021	45.714	70	36	1	2	71	12	79	3.85e-17	75.1
MsaG016126	MtrunA17_Chr5g0417661	58.491	53	22	0	1	53	56	108	1.31e-16	72.4
MsaG016126	MtrunA17_Chr4g0060841	62.264	53	20	0	1	53	1	53	1.54e-16	75.9
MsaG016126	MtrunA17_Chr1g0208561	47.143	70	35	1	2	71	9	76	1.73e-16	74.3
MsaG016126	MtrunA17_Chr1g0208581	48.571	70	34	1	2	71	9	76	1.78e-16	74.3
MsaG016126	MtrunA17_Chr3g0089141	47.143	70	35	1	2	71	9	76	1.91e-16	74.3
MsaG016126	MtrunA17_Chr2g0333981	44.615	65	36	0	1	65	11	75	2.93e-16	72.8
MsaG016126	MtrunA17_Chr3g0099421	50.000	70	33	1	2	71	34	101	1.05e-15	72.8
MsaG016126	MtrunA17_Chr2g0325971	45.714	70	36	1	2	71	9	76	1.64e-15	71.6
MsaG016126	MtrunA17_Chr1g0206701	31.250	144	67	6	2	137	9	128	2.36e-15	71.2
MsaG016126	MtrunA17_Chr4g0052081	53.333	60	28	0	1	60	1	60	2.93e-15	70.1
MsaG016126	MtrunA17_Chr1g0187361	45.714	70	36	1	2	71	9	76	3.38e-15	70.9
MsaG016126	MtrunA17_Chr1g0188671	47.143	70	35	1	2	71	47	114	4.86e-15	71.2
MsaG016126	MtrunA17_Chr5g0419601	45.070	71	37	1	1	71	8	76	4.89e-15	70.5
MsaG016126	MtrunA17_Chr2g0317481	45.714	70	36	1	2	71	9	76	5.20e-15	70.5
MsaG016126	MtrunA17_Chr2g0317451	45.714	70	36	1	2	71	9	76	5.20e-15	70.5
MsaG016126	MtrunA17_Chr1g0166611	55.319	47	21	0	13	59	17	63	7.22e-15	67.8
MsaG016126	MtrunA17_Chr2g0292791	45.714	70	36	1	2	71	9	76	7.52e-15	70.1
MsaG016126	MtrunA17_Chr8g0355091	46.479	71	34	2	2	71	9	76	8.95e-15	69.7
MsaG016126	MtrunA17_Chr5g0422941	35.455	110	62	2	2	104	9	116	1.03e-14	69.7
MsaG016126	MtrunA17_Chr4g0052061	32.117	137	82	4	1	130	1	133	1.25e-14	67.8
MsaG016126	MtrunA17_Chr3g0099411	44.286	70	37	1	2	71	9	76	1.32e-14	68.9
MsaG016126	MtrunA17_Chr1g0206721	44.286	70	37	1	2	71	9	76	1.72e-14	68.9
MsaG016126	MtrunA17_Chr8g0376821	40.000	65	39	0	1	65	1	65	2.03e-14	67.8
MsaG016126	MtrunA17_Chr1g0149391	48.485	66	33	1	2	66	9	74	2.49e-14	68.6
MsaG016126	MtrunA17_Chr1g0175611	40.000	65	39	0	1	65	1	65	4.18e-14	66.6
MsaG016126	MtrunA17_Chr1g0169761	40.000	65	39	0	1	65	1	65	5.31e-14	66.6
MsaG016126	MtrunA17_Chr1g0206991	42.857	70	38	1	2	71	9	76	6.87e-14	66.6
MsaG016126	MtrunA17_Chr5g0422421	48.485	66	33	1	2	66	9	74	1.10e-13	67.0
MsaG016126	MtrunA17_Chr1g0175601	40.000	65	39	0	1	65	1	65	1.13e-13	65.9
MsaG016126	MtrunA17_Chr1g0180591	30.345	145	71	5	1	121	1	139	1.28e-13	65.5
MsaG016126	MtrunA17_Chr8g0357771	41.935	62	36	0	1	62	1	62	1.36e-13	65.5
MsaG016126	MtrunA17_Chr2g0300421	46.667	60	32	0	2	61	9	68	4.46e-13	64.3
MsaG016126	MtrunA17_Chr4g0074101	36.923	65	41	0	1	65	1	65	6.02e-13	64.3
MsaG016126	MtrunA17_Chr2g0300441	31.783	129	67	4	2	111	7	133	7.62e-13	64.7
MsaG016126	MtrunA17_Chr6g0449851	46.774	62	33	0	1	62	1	62	8.33e-13	65.1
MsaG016126	MtrunA17_Chr6g0457851	26.797	153	94	4	1	138	11	160	1.22e-12	65.1
MsaG016126	MtrunA17_Chr3g0089151	41.429	70	39	1	2	71	9	76	1.65e-12	61.6
MsaG016126	MtrunA17_Chr8g0356071	40.000	65	39	0	1	65	1	65	2.03e-12	62.0
MsaG016126	MtrunA17_Chr4g0018951	48.077	52	27	0	14	65	24	75	2.10e-12	62.4
MsaG016126	MtrunA17_Chr3g0119901	38.028	71	42	1	1	71	8	76	2.21e-12	62.8
MsaG016126	MtrunA17_Chr3g0111841	45.000	60	33	0	8	67	2	61	4.04e-12	58.9
MsaG016126	MtrunA17_Chr3g0085241	38.028	71	42	1	1	71	40	108	4.79e-12	62.4
MsaG016126	MtrunA17_Chr1g0187351	38.028	71	42	1	11	81	1	69	1.07e-11	57.8
MsaG016126	MtrunA17_Chr1g0212151	27.922	154	93	4	1	139	1	151	1.20e-11	62.0
MsaG016126	MtrunA17_Chr2g0283941	38.806	67	41	0	5	71	5	71	3.48e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016126	AT5G20240.1	63.473	167	61	0	1	167	1	167	1.02e-73	221
MsaG016126	AT5G20240.2	67.133	143	47	0	1	143	1	143	4.77e-68	204
MsaG016126	AT3G54340.1	47.143	140	74	0	1	140	1	140	6.88e-41	138
MsaG016126	AT5G23260.1	39.766	171	100	2	1	169	17	186	4.27e-38	132
MsaG016126	AT5G23260.2	39.429	175	100	2	1	169	1	175	1.17e-37	130
MsaG016126	AT5G23260.4	39.429	175	100	2	1	169	17	191	1.73e-37	130
MsaG016126	AT2G42830.1	44.898	147	74	2	1	142	16	160	1.13e-36	127
MsaG016126	AT2G42830.2	44.898	147	74	2	1	142	16	160	1.20e-36	127
MsaG016126	AT3G58780.1	44.218	147	75	2	1	142	16	160	2.08e-36	127
MsaG016126	AT5G23260.3	39.181	171	92	2	1	169	1	161	2.54e-36	126
MsaG016126	AT3G58780.5	44.218	147	75	2	1	142	22	166	2.57e-36	127
MsaG016126	AT3G58780.4	44.138	145	74	2	1	140	16	158	6.63e-36	126
MsaG016126	AT3G58780.2	43.537	147	69	2	1	142	16	153	2.30e-35	124
MsaG016126	AT2G45650.1	44.521	146	75	2	1	142	1	144	9.01e-35	123
MsaG016126	AT5G15800.1	47.260	146	71	3	1	141	1	145	2.41e-34	122
MsaG016126	AT5G15800.2	47.260	146	71	3	1	141	1	145	2.66e-34	122
MsaG016126	AT3G57230.1	38.144	194	99	6	1	178	1	189	3.12e-34	121
MsaG016126	AT3G57230.4	38.144	194	99	6	1	178	1	189	3.12e-34	121
MsaG016126	AT3G02310.2	48.227	141	67	3	1	136	1	140	5.78e-34	119
MsaG016126	AT1G24260.1	43.537	147	67	3	1	136	1	142	7.32e-34	120
MsaG016126	AT1G24260.3	43.243	148	67	3	1	136	1	143	8.58e-34	120
MsaG016126	AT1G24260.2	43.243	148	67	3	1	136	1	143	1.16e-33	120
MsaG016126	AT5G13790.2	47.887	142	67	3	1	139	1	138	1.28e-33	120
MsaG016126	AT3G02310.1	43.678	174	88	5	1	165	1	173	1.42e-33	119
MsaG016126	AT5G13790.1	47.482	139	69	2	1	139	1	135	1.72e-33	120
MsaG016126	AT4G09960.6	42.177	147	78	2	1	142	2	146	1.77e-33	119
MsaG016126	AT4G09960.1	42.177	147	78	2	1	142	1	145	1.98e-33	119
MsaG016126	AT4G09960.5	42.177	147	78	2	1	142	11	155	2.32e-33	119
MsaG016126	AT1G26310.1	45.205	146	72	3	1	139	1	145	2.33e-33	119
MsaG016126	AT3G58780.3	38.824	170	76	2	1	142	16	185	2.74e-33	119
MsaG016126	AT4G09960.3	42.177	147	78	2	1	142	27	171	3.50e-33	119
MsaG016126	AT4G24540.1	45.562	169	81	5	1	160	1	167	3.97e-33	117
MsaG016126	AT4G09960.2	42.361	144	76	2	1	139	1	142	4.41e-33	117
MsaG016126	AT1G69120.2	44.444	144	74	3	1	139	1	143	5.80e-33	117
MsaG016126	AT3G30260.1	43.448	145	74	3	1	139	1	143	6.71e-33	118
MsaG016126	AT5G60910.1	42.604	169	87	4	1	160	1	168	7.04e-33	117
MsaG016126	AT2G45660.2	40.940	149	81	2	1	144	1	147	1.07e-32	115
MsaG016126	AT2G45660.1	39.412	170	92	3	1	161	1	168	1.13e-32	116
MsaG016126	AT1G69120.1	44.444	144	74	3	1	139	1	143	1.20e-32	117
MsaG016126	AT3G57230.2	41.497	147	74	3	1	140	1	142	2.07e-32	114
MsaG016126	AT3G61120.1	44.218	147	73	3	1	142	1	143	2.32e-32	116
MsaG016126	AT3G57390.3	37.234	188	102	4	1	175	1	185	2.37e-32	116
MsaG016126	AT4G09960.4	39.181	171	89	3	1	166	96	256	2.66e-32	118
MsaG016126	AT2G14210.1	41.618	173	82	5	1	160	1	167	2.96e-32	116
MsaG016126	AT2G14210.2	41.618	173	82	5	1	160	1	167	3.56e-32	115
MsaG016126	AT3G57390.1	37.234	188	102	4	1	175	1	185	4.36e-32	116
MsaG016126	AT4G18960.1	43.151	146	76	2	2	142	18	161	1.04e-31	115
MsaG016126	AT5G51870.4	38.202	178	88	4	1	159	1	175	1.22e-31	114
MsaG016126	AT5G51870.1	40.761	184	93	6	1	177	1	175	1.29e-31	113
MsaG016126	AT5G51870.2	42.568	148	75	3	1	141	1	145	1.40e-31	112
MsaG016126	AT5G51870.3	38.202	178	88	4	1	159	11	185	1.81e-31	114
MsaG016126	AT5G51870.5	42.568	148	75	3	1	141	24	168	2.83e-31	112
MsaG016126	AT2G03710.3	39.189	148	76	2	1	139	1	143	2.83e-30	109
MsaG016126	AT2G03710.2	39.161	143	83	2	1	139	1	143	1.76e-29	109
MsaG016126	AT2G03710.1	39.161	143	83	2	1	139	1	143	1.84e-29	109
MsaG016126	AT4G22950.2	40.541	148	82	2	1	144	1	146	3.07e-29	106
MsaG016126	AT4G37940.3	36.943	157	79	3	1	146	1	148	7.37e-29	105
MsaG016126	AT4G22950.3	40.541	148	82	2	1	144	1	146	1.25e-28	106
MsaG016126	AT4G22950.1	40.541	148	82	2	1	144	1	146	1.25e-28	106
MsaG016126	AT4G37940.4	38.000	150	73	3	1	139	1	141	2.37e-28	105
MsaG016126	AT2G22540.3	40.000	170	89	4	1	160	1	167	2.81e-28	105
MsaG016126	AT2G22540.1	40.000	170	89	4	1	160	1	167	2.81e-28	105
MsaG016126	AT4G37940.1	38.000	150	73	3	1	139	1	141	2.83e-28	105
MsaG016126	AT4G11880.2	39.865	148	84	2	1	144	1	147	3.65e-28	103
MsaG016126	AT4G11880.3	39.865	148	84	2	1	144	1	147	3.65e-28	103
MsaG016126	AT5G62165.17	38.710	155	76	5	1	144	1	147	4.54e-28	103
MsaG016126	AT5G62165.12	38.710	155	76	5	1	144	1	147	4.54e-28	103
MsaG016126	AT5G62165.11	38.710	155	76	5	1	144	1	147	4.54e-28	103
MsaG016126	AT5G62165.6	39.216	153	74	5	1	142	1	145	5.33e-28	102
MsaG016126	AT5G62165.9	39.216	153	74	5	1	142	1	145	5.33e-28	102
MsaG016126	AT5G62165.7	39.216	153	74	5	1	142	1	145	5.33e-28	102
MsaG016126	AT5G62165.8	39.216	153	74	5	1	142	1	145	5.33e-28	102
MsaG016126	AT5G62165.13	39.216	153	74	5	1	142	1	145	5.33e-28	102
MsaG016126	AT5G10140.2	40.816	147	73	3	1	142	1	138	8.00e-28	102
MsaG016126	AT4G11880.4	39.865	148	84	2	1	144	1	147	9.06e-28	103
MsaG016126	AT4G11880.1	39.865	148	84	2	1	144	1	147	9.06e-28	103
MsaG016126	AT5G10140.3	40.816	147	73	3	1	142	1	138	1.65e-27	102
MsaG016126	AT5G10140.4	40.816	147	73	3	1	142	1	138	1.74e-27	102
MsaG016126	AT5G10140.1	40.816	147	73	3	1	142	1	138	2.19e-27	102
MsaG016126	AT5G62165.3	38.012	171	84	6	1	160	1	160	2.84e-27	102
MsaG016126	AT5G62165.1	38.012	171	84	6	1	160	1	160	2.84e-27	102
MsaG016126	AT5G62165.2	38.012	171	84	6	1	160	1	160	2.84e-27	102
MsaG016126	AT5G62165.10	40.000	150	71	5	1	139	1	142	1.31e-26	100
MsaG016126	AT5G62165.4	40.000	150	71	5	1	139	1	142	1.31e-26	100
MsaG016126	AT2G22630.1	36.601	153	77	3	1	142	1	144	2.77e-26	100
MsaG016126	AT2G22630.2	36.601	153	77	3	1	142	1	144	2.77e-26	100
MsaG016126	AT2G22540.2	38.235	170	87	4	1	160	1	162	3.90e-25	97.8
MsaG016126	AT5G51860.1	34.132	167	92	3	1	161	1	155	9.79e-24	93.6
MsaG016126	AT5G51860.2	34.337	166	91	3	1	160	1	154	1.02e-23	93.2
MsaG016126	AT5G65070.1	34.545	165	100	4	1	161	1	161	2.42e-23	92.0
MsaG016126	AT5G62165.14	54.795	73	31	1	1	73	1	71	5.50e-23	88.6
MsaG016126	AT1G31140.2	37.333	150	84	3	1	142	1	148	6.55e-23	91.3
MsaG016126	AT5G65060.3	34.146	164	100	3	1	160	1	160	9.84e-23	90.1
MsaG016126	AT1G31140.1	34.932	146	91	2	1	142	1	146	1.46e-22	90.5
MsaG016126	AT5G65060.1	33.951	162	99	3	1	158	1	158	1.48e-22	90.1
MsaG016126	AT1G71692.1	35.714	154	86	3	1	142	1	153	3.76e-22	89.4
MsaG016126	AT5G65070.4	35.000	140	87	2	1	140	1	136	7.93e-22	86.7
MsaG016126	AT5G65050.2	32.317	164	103	3	1	160	1	160	1.45e-21	87.0
MsaG016126	AT5G65050.3	32.317	164	103	3	1	160	1	160	2.02e-21	87.0
MsaG016126	AT5G65050.1	34.507	142	89	2	1	142	1	138	5.65e-21	85.5
MsaG016126	AT5G65050.5	34.146	164	89	6	1	160	1	149	6.44e-21	85.5
MsaG016126	AT5G65070.2	48.611	72	36	1	1	72	1	71	5.11e-20	84.0
MsaG016126	AT5G65070.5	48.611	72	36	1	1	72	1	71	6.24e-20	83.6
MsaG016126	AT5G65060.2	34.146	164	89	5	1	160	1	149	6.78e-20	82.8
MsaG016126	AT5G65080.3	34.014	147	83	5	1	142	8	145	1.45e-19	82.0
MsaG016126	AT1G77080.11	35.976	164	97	3	1	160	1	160	2.33e-19	81.3
MsaG016126	AT5G65070.3	29.082	196	101	3	1	161	1	193	2.35e-19	82.4
MsaG016126	AT1G77980.1	52.113	71	33	1	1	71	1	70	2.49e-19	84.0
MsaG016126	AT1G22130.1	52.113	71	33	1	1	71	1	70	3.30e-19	83.6
MsaG016126	AT1G77080.5	35.976	164	97	3	1	160	1	160	3.58e-19	80.5
MsaG016126	AT1G77080.4	35.976	164	97	3	1	160	1	160	5.10e-19	80.9
MsaG016126	AT1G18750.1	33.793	145	83	2	1	144	1	133	1.47e-18	82.4
MsaG016126	AT1G18750.4	33.793	145	83	2	1	144	1	133	1.76e-18	82.0
MsaG016126	AT5G65080.2	32.000	150	81	3	1	142	8	144	1.80e-18	79.3
MsaG016126	AT1G18750.3	44.156	77	43	0	1	77	1	77	2.83e-18	81.6
MsaG016126	AT1G77950.3	50.704	71	34	1	1	71	1	70	1.29e-17	78.2
MsaG016126	AT1G77950.2	50.704	71	34	1	1	71	1	70	1.29e-17	78.2
MsaG016126	AT1G77950.1	50.704	71	34	1	1	71	1	70	1.29e-17	78.2
MsaG016126	AT1G77950.4	50.704	71	34	1	1	71	1	70	1.29e-17	78.2
MsaG016126	AT1G77080.2	35.976	164	93	3	1	160	1	156	1.79e-17	76.6
MsaG016126	AT1G77080.12	36.620	142	82	2	1	142	1	134	6.56e-17	73.9
MsaG016126	AT1G77080.8	33.511	188	96	6	1	160	1	187	1.66e-16	74.7
MsaG016126	AT2G03060.2	38.202	89	55	0	1	89	1	89	3.78e-16	75.5
MsaG016126	AT2G03060.3	38.202	89	55	0	1	89	1	89	3.93e-16	75.5
MsaG016126	AT2G03060.7	38.202	89	55	0	1	89	1	89	3.93e-16	75.5
MsaG016126	AT2G03060.1	38.202	89	55	0	1	89	1	89	3.93e-16	75.5
MsaG016126	AT1G47760.1	31.788	151	85	4	1	143	1	141	6.97e-16	72.0
MsaG016126	AT4G37435.1	45.455	77	39	1	1	74	1	77	8.39e-16	72.0
MsaG016126	AT1G01530.1	44.776	67	36	1	1	66	6	72	1.81e-14	69.7
MsaG016126	AT1G65360.1	44.118	68	35	1	1	68	6	70	2.09e-14	68.9
MsaG016126	AT1G69540.1	54.717	53	24	0	1	53	1	53	6.40e-14	68.9
MsaG016126	AT1G69540.2	54.717	53	24	0	1	53	1	53	7.28e-14	68.9
MsaG016126	AT2G34440.1	38.356	73	43	1	1	73	1	71	9.96e-14	66.2
MsaG016126	AT1G72350.1	38.636	88	50	1	2	89	43	126	4.11e-13	65.5
MsaG016126	AT2G24840.1	42.254	71	39	1	1	71	62	130	4.26e-13	65.9
MsaG016126	AT4G36590.1	49.180	61	31	0	2	62	7	67	5.53e-13	65.5
MsaG016126	AT3G04100.1	37.838	74	44	1	2	75	14	85	9.12e-13	64.3
MsaG016126	AT5G60440.1	36.047	86	51	2	2	87	7	88	9.79e-13	65.5
MsaG016126	AT3G66656.1	36.923	65	41	0	1	65	1	65	2.59e-12	62.4
MsaG016126	AT1G28460.1	45.312	64	35	0	2	65	8	71	4.89e-12	62.0
MsaG016126	AT2G26320.1	39.437	71	43	0	1	71	17	87	5.86e-12	60.1
MsaG016126	AT1G29962.1	43.750	64	36	0	2	65	8	71	6.84e-12	61.6

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTAAGGTTGATTGATATTC+TGG	0.185614	3:+94415368	MsaT016126.1:intron
CTTATTCTCTTTGGTGCTTC+TGG	0.224800	3:+94415220	MsaT016126.1:CDS
CAAGTTTCGCTTATTCTCTT+TGG	0.230902	3:+94415211	MsaT016126.1:CDS
TCCCTTGAAAATGGTCTTAC+TGG	0.307586	3:+94416117	MsaT016126.1:CDS
GATCTTGGAGGATGAAAATA+AGG	0.308110	3:+94416551	MsaT016126.1:CDS
TTATTTCCTTTGCTTTCTTA+AGG	0.309717	3:-94415171	None:intergenic
TACTGGTGTCCGTGAGAAAA+AGG	0.354637	3:+94416134	MsaT016126.1:CDS
TGAAATTGATAGAATCAAAA+AGG	0.362176	3:+94415912	MsaT016126.1:CDS
GACAGATACCAGAGAGCCTC+TGG	0.368842	3:+94415390	MsaT016126.1:CDS
TGATCAACAGCAACAGCATA+TGG	0.396271	3:+94417203	MsaT016126.1:intron
TATTGCTCAGGGAAAGATCT+TGG	0.406615	3:+94416536	MsaT016126.1:intron
CTTGAGGAATCCCTTGAAAA+TGG	0.411239	3:+94416108	MsaT016126.1:CDS
TTCTATCAATTTCATTGCTA+AGG	0.430130	3:-94415903	None:intergenic
ACTTATTCAAAGAGAAAGAA+TGG	0.449287	3:+94415145	MsaT016126.1:CDS
GGATTGAAAACTCAAGCAAC+AGG	0.469738	3:+94415116	MsaT016126.1:CDS
GAGCCTCTGGGAAAACCCTA+TGG	0.475629	3:+94415403	MsaT016126.1:CDS
TATTAATTTCAGGCACTTGA+AGG	0.478480	3:+94416044	MsaT016126.1:intron
GCTAGAAGAAGAAGATGGGA+AGG	0.493097	3:+94415074	None:intergenic
GGGGTAAGATTGAGATCAAG+AGG	0.495877	3:+94415095	MsaT016126.1:CDS
CAACAGCATATGGCACTTGA+AGG	0.504524	3:+94417213	MsaT016126.1:CDS
TAGAAGAAGAAGATGGGAAG+GGG	0.534165	3:+94415076	None:intergenic
CCTCATGCTTAGCATCCCAT+AGG	0.537774	3:-94415419	None:intergenic
ATAAGTGCTTACGTGGTGGA+AGG	0.543600	3:-94415265	None:intergenic
TTTCAGGCACTTGAAGGGAG+AGG	0.544750	3:+94416050	MsaT016126.1:intron
ATTAATTTCAGGCACTTGAA+GGG	0.550773	3:+94416045	MsaT016126.1:intron
GCATATGGCACTTGAAGGTG+TGG	0.571758	3:+94417218	MsaT016126.1:CDS
TCCTACAGATGGAAGTGCAT+AGG	0.572079	3:+94416271	MsaT016126.1:intron
AGCCTCTGGGAAAACCCTAT+GGG	0.575896	3:+94415404	MsaT016126.1:CDS
ACAGCATGCAAATTGACCTC+AGG	0.580242	3:+94415941	MsaT016126.1:CDS
CTAGAAGAAGAAGATGGGAA+GGG	0.582114	3:+94415075	None:intergenic
TGCTCAGGGAAAGATCTTGG+AGG	0.595250	3:+94416539	MsaT016126.1:intron
CTCATGCTTAGCATCCCATA+GGG	0.604792	3:-94415418	None:intergenic
ACAGATACCAGAGAGCCTCT+GGG	0.613351	3:+94415391	MsaT016126.1:CDS
TAAGTGCTTACGTGGTGGAA+GGG	0.616789	3:-94415264	None:intergenic
CAAAGAGCTGATGTCCCTTG+AGG	0.627732	3:+94416092	MsaT016126.1:CDS
TGGAATCCTTAAGAAAGCAA+AGG	0.631436	3:+94415165	MsaT016126.1:CDS
TGGGAAACATGCATGGACAA+TGG	0.636022	3:+94417238	MsaT016126.1:CDS
GAAGGTGTGGGAAACATGCA+TGG	0.644321	3:+94417231	MsaT016126.1:CDS
CATATGGCACTTGAAGGTGT+GGG	0.672701	3:+94417219	MsaT016126.1:CDS
CAGCTCTTTGTAATTCAGTG+AGG	0.683025	3:-94416079	None:intergenic
CCTATGGGATGCTAAGCATG+AGG	0.686598	3:+94415419	MsaT016126.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	94415088	94417266	94415088	ID=MsaG016126
Chr3	mRNA	94415088	94417266	94415088	ID=MsaT016126.1;Parent=MsaG016126
Chr3	exon	94415088	94415275	94415088	ID=MsaT016126.1.exon1;Parent=MsaT016126.1
Chr3	CDS	94415088	94415275	94415088	ID=cds.MsaT016126.1;Parent=MsaT016126.1
Chr3	exon	94415374	94415440	94415374	ID=MsaT016126.1.exon2;Parent=MsaT016126.1
Chr3	CDS	94415374	94415440	94415374	ID=cds.MsaT016126.1;Parent=MsaT016126.1
Chr3	exon	94415901	94415962	94415901	ID=MsaT016126.1.exon3;Parent=MsaT016126.1
Chr3	CDS	94415901	94415962	94415901	ID=cds.MsaT016126.1;Parent=MsaT016126.1
Chr3	exon	94416056	94416155	94416056	ID=MsaT016126.1.exon4;Parent=MsaT016126.1
Chr3	CDS	94416056	94416155	94416056	ID=cds.MsaT016126.1;Parent=MsaT016126.1
Chr3	exon	94416279	94416308	94416279	ID=MsaT016126.1.exon5;Parent=MsaT016126.1
Chr3	CDS	94416279	94416308	94416279	ID=cds.MsaT016126.1;Parent=MsaT016126.1
Chr3	exon	94416546	94416590	94416546	ID=MsaT016126.1.exon6;Parent=MsaT016126.1
Chr3	CDS	94416546	94416590	94416546	ID=cds.MsaT016126.1;Parent=MsaT016126.1
Chr3	exon	94417213	94417266	94417213	ID=MsaT016126.1.exon7;Parent=MsaT016126.1
Chr3	CDS	94417213	94417266	94417213	ID=cds.MsaT016126.1;Parent=MsaT016126.1

Gene Sequence

>MsaT016126.1

ATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAAAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGAATCCTTAAGAAAGCAAAGGAAATAAGTGTTCTTTGTGATGCTCAAGTTTCGCTTATTCTCTTTGGTGCTTCTGGTAAGATGCATGAATACATCAGCCCTTCCACCACGTTGATTGATATTCTGGACAGATACCAGAGAGCCTCTGGGAAAACCCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGACAGCATGCAAATTGACCTCAGGCACTTGAAGGGAGAGGACATTACCTCACTGAATTACAAAGAGCTGATGTCCCTTGAGGAATCCCTTGAAAATGGTCTTACTGGTGTCCGTGAGAAAAAGATGGAAGTGCATAGGATGTTCAAGAGAAATGGAAAGATCTTGGAGGATGAAAATAAGGAACTCAATTTTCTTCTGCAACAGCATATGGCACTTGAAGGTGTGGGAAACATGCATGGACAATGGATTTAA

Protein sequence

>MsaT016126.1

MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIDLRHLKGEDITSLNYKELMSLEESLENGLTGVREKKMEVHRMFKRNGKILEDENKELNFLLQQHMALEGVGNMHGQWI*