AlfalfaGEDB | MsaG016160

M. sativa ssp. caerulea / MsaG016160

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016160	KEH35374.1	93.475	705	45	1	1	705	1	704	0.0	1373

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016160	sp\|Q9LMN8\|WAK3_ARATH	45.506	712	341	18	5	696	4	688	0.0	570

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016160	A0A072V058	93.475	705	45	1	1	705	1	704	0.0	1373

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG016160	MtrunA17_Chr3g0125431	72.535	710	187	5	1	705	1	707	1046
MsaG016160	MtrunA17_Chr3g0125461	71.429	707	188	6	1	701	23	721	1004
MsaG016160	MtrunA17_Chr2g0279661	70.464	711	203	4	1	705	3	712	999
MsaG016160	MtrunA17_Chr3g0125441	66.988	727	214	7	1	705	15	737	984
MsaG016160	MtrunA17_Chr3g0125451	68.106	718	200	8	1	705	1	702	953
MsaG016160	MtrunA17_Chr3g0125471	62.465	706	181	9	6	701	7	638	820
MsaG016160	MtrunA17_Chr3g0125481	91.549	355	29	1	1	355	1	354	684
MsaG016160	MtrunA17_Chr3g0125491	95.858	338	14	0	368	705	1	338	672
MsaG016160	MtrunA17_Chr1g0158201	46.788	716	332	17	8	707	14	696	599
MsaG016160	MtrunA17_Chr1g0158261	46.853	715	328	18	8	707	15	692	591

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016160	AT1G21240.1	45.506	712	341	18	5	696	4	688	0.0	570
MsaG016160	AT1G21230.1	45.467	706	335	19	9	696	8	681	0.0	560
MsaG016160	AT1G21270.1	44.130	707	347	19	5	696	4	677	0.0	552
MsaG016160	AT1G21250.1	44.741	713	346	18	1	696	1	682	0.0	550
MsaG016160	AT1G21210.1	40.762	709	373	17	6	696	4	683	2.64e-171	509
MsaG016160	AT1G69730.1	39.357	747	359	22	10	696	9	721	1.19e-151	460
MsaG016160	AT1G16130.1	39.082	719	365	22	9	696	13	689	4.14e-149	452
MsaG016160	AT1G16120.1	38.897	725	373	18	8	696	12	702	7.05e-146	443
MsaG016160	AT1G79670.1	38.347	738	349	21	8	696	14	694	1.80e-143	437
MsaG016160	AT1G16150.1	36.992	738	362	23	9	696	13	697	4.41e-140	429

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Find 156 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATAACCACATGAAC+GGG	0.470682	3:-94791034	None:intergenic
AAACTGTTCCCTGACCACCT+TGG	0.622674	3:-94792179	None:intergenic
AAAGCTTTACCACATTTCTA+TGG	0.328352	3:-94792314	None:intergenic
AACAGAAACTGCTGGAGTCT+TGG	0.459162	3:+94792467	MsaT016160.1:CDS
AACGTGTCAGCAAGCTCAGA+AGG	0.576419	3:+94791152	MsaT016160.1:CDS
AAGAAACAAAATGCATTGCA+AGG	0.523797	3:-94792791	None:intergenic
AAGACCCACCATGAAAGAAG+TGG	0.633601	3:+94792932	MsaT016160.1:CDS
AAGAGTGATGTCTATAGCTT+TGG	0.380724	3:+94792699	MsaT016160.1:CDS
AAGTTGCCATAATTGTAGAA+AGG	0.601440	3:+94792886	MsaT016160.1:CDS
AATGACGAACTTACTGTCGA+GGG	0.637235	3:-94790575	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	94790424	94793216	94790424	ID=MsaG016160
Chr3	mRNA	94790424	94793216	94790424	ID=MsaT016160.1;Parent=MsaG016160
Chr3	exon	94790424	94791303	94790424	ID=MsaT016160.1.exon1;Parent=MsaT016160.1
Chr3	CDS	94790424	94791303	94790424	ID=cds.MsaT016160.1;Parent=MsaT016160.1
Chr3	exon	94791518	94791700	94791518	ID=MsaT016160.1.exon2;Parent=MsaT016160.1
Chr3	CDS	94791518	94791700	94791518	ID=cds.MsaT016160.1;Parent=MsaT016160.1
Chr3	exon	94791950	94793002	94791950	ID=MsaT016160.1.exon3;Parent=MsaT016160.1
Chr3	CDS	94791950	94793002	94791950	ID=cds.MsaT016160.1;Parent=MsaT016160.1
Chr3	exon	94793203	94793216	94793203	ID=MsaT016160.1.exon4;Parent=MsaT016160.1
Chr3	CDS	94793203	94793216	94793203	ID=cds.MsaT016160.1;Parent=MsaT016160.1

Gene Sequence

>MsaT016160.1

ATGGCTTTGTCAAAACAACAGGTGCTTCTGATTGTAGTTTTTGCTGTTTTTTATACAAAAGTAGCAACTCAACCTATGTCACTACCAAACTGTCAAACAAAATGTGGTTCTGTCACCATTCCCTTTCCATTTGGAATCACAAAAGATTGTTCCCTCGACAGTAAGTTCGTCATTAGTTGCTACAATACATCTTCAACACCAAAATCCACAACATACGAACCTTTCTTGGCAAACACTGACCAAAGGGTCCTAAATATCTCACTCAATGGTGAATTGCGTGTTGCATGGCCAGTAGCCAGTCATTGTTATGCAGAAAGTGCCATGCTCGTGGCCCAAACATCTCAAAATATCATCGTGACGCATTTTCAGGTTTCACCGACTCGAAACAAATTGATAGTAGTTGGCGATTACATAGTTGGACTACTCACAACATATGATTCTGATGGACGCAACTATACCACTGGATGTTTGACTTTGTGCAACATGAATGATAATATCACGGTTCATGAACCTTGTTCTTGTGAGAGTTCAATACCCACTGGTCATGCGACAACGGGAGTATCATATGATTCTGAAAGTGTAGTGAATAATCACATAGTAGAAAATAACTCCCGTTCATGTGGTTATGCTTTTGTGGTTGAATATGGAGCCTACAGCTTCAATTCCACAGACCTCAGGTTGATAAACAAGGAGTTTCCTGTGTTGTTGGACTGGGCAGTAGGTAACCAAACGTGTCAGCAAGCTCAGAAGGATCTTTCCACTTATGCATGTAAGGCCGACAAAAGTACATGTTACGATGCAACAACTGACAGATCTGGTTACCTTTGTAGATGTCTTTATGGATATCGGGGAAATCCTTATCTCGTTCATGGTTGCCAAGATGTTAATGATTGCATGGAATCCAAATACTGTGTTGAGGAGGCGAGATGCATCAATCGTCCCGGAAGCTACCATTGTTTATGCCCAGAAGGATATGAGGGAGACGGGAAAAATAATGGAACAGGATGCAGTCCGAACTCCAGTACCAAATCAAGGAATGATATCTTGGATATCATTGCATTGAGTGTCTGCGTAGGCCTCATATCATTACTGGTAGGAAGCATTTATGCATATTTAGCATTGAAGAAAAGAAGTCTTGTTAAACTTAAAGAACATTTTTTTCAACAAAACGGTGGTTTACTGTTACAACAACAAATAGTGAAGCATGGAGGATCAGCTGGAACACCTAAAGTCTTCACTATTGAGGAGCTAAATAAAGCAACCAACAACTTCAATGAAGGCAGGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAACAGAATTGTAGCAATAAAAAAGTCCACAATCAGTGACGAAAACCAGATTGAGCCGTTCATCAATGAAGTGGTCATTCTTTCTCAAATCAACCATAGAAATGTGGTAAAGCTTTTGGGTTGCTGTTTAGAAACAGAAGTTCCATTGCTTGTTTATGAGTTTATTTCCAATGGTACTGTTTATGATCATCTTCATGATCAAAACCAATCTATAAAGCTGACATGGAACACAAGATTAAGAATAGCAACAGAAACTGCTGGAGTCTTGGCATACTTACATTCGGCTGTTTCTACTCCAATCATTCATAGAGATATAAAATCTACAAACATCCTCCTAGATGGCAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCAAAGATTGTTCCTCTTGATCACAGTCAGATAAACACTCTTGTGCAGGGGACATTGGGGTATCTTGACCCAGAATACTTCCAGACAAGCATGTTAACTGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTATTGACAGGAAAGAAAGCACTGTGTTTTAGTAGGCCAGATGTAGAAAGAAGCCTTGCAATGCATTTTGTTTCTTCAATGAAAGAAGATTGCTTGCTTCATATTCTGGACAGCAACATTGATTGGGAAGATGTTGATCATCTAACGGAAGTTGCCATAATTGTAGAAAGGTGTTTAAAGATGAACAGTGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATATTAGGTATTGAAGAGCAGCCTTTGGGAAGGACGTTGTTTTGA

Protein sequence

>MsaT016160.1

MALSKQQVLLIVVFAVFYTKVATQPMSLPNCQTKCGSVTIPFPFGITKDCSLDSKFVISCYNTSSTPKSTTYEPFLANTDQRVLNISLNGELRVAWPVASHCYAESAMLVAQTSQNIIVTHFQVSPTRNKLIVVGDYIVGLLTTYDSDGRNYTTGCLTLCNMNDNITVHEPCSCESSIPTGHATTGVSYDSESVVNNHIVENNSRSCGYAFVVEYGAYSFNSTDLRLINKEFPVLLDWAVGNQTCQQAQKDLSTYACKADKSTCYDATTDRSGYLCRCLYGYRGNPYLVHGCQDVNDCMESKYCVEEARCINRPGSYHCLCPEGYEGDGKNNGTGCSPNSSTKSRNDILDIIALSVCVGLISLLVGSIYAYLALKKRSLVKLKEHFFQQNGGLLLQQQIVKHGGSAGTPKVFTIEELNKATNNFNEGRILGQGGQGTVYKGVLQDNRIVAIKKSTISDENQIEPFINEVVILSQINHRNVVKLLGCCLETEVPLLVYEFISNGTVYDHLHDQNQSIKLTWNTRLRIATETAGVLAYLHSAVSTPIIHRDIKSTNILLDGNLIAKVSDFGASKIVPLDHSQINTLVQGTLGYLDPEYFQTSMLTEKSDVYSFGVVLAELLTGKKALCFSRPDVERSLAMHFVSSMKEDCLLHILDSNIDWEDVDHLTEVAIIVERCLKMNSEERPTMKEVAMELEGILGIEEQPLGRTLF*