Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016184 | PQP91596.1 | 53.906 | 512 | 167 | 13 | 1 | 468 | 1 | 487 | 1.61e-150 | 447 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016184 | sp|Q9SDQ3|SCL1_ARATH | 62.232 | 233 | 72 | 3 | 252 | 468 | 361 | 593 | 1.56e-91 | 292 |
MsaG016184 | sp|Q9SDQ3|SCL1_ARATH | 42.553 | 282 | 116 | 15 | 1 | 253 | 16 | 280 | 7.70e-34 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016184 | A0A314XHW1 | 53.906 | 512 | 167 | 13 | 1 | 468 | 1 | 487 | 7.71e-151 | 447 |
Gene ID | Type | Classification |
---|---|---|
MsaG016184 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016184 | MtrunA17_Chr3g0125811 | 90.079 | 252 | 25 | 0 | 1 | 252 | 6 | 257 | 2.79e-145 | 427 |
MsaG016184 | MtrunA17_Chr3g0125811 | 76.923 | 247 | 40 | 4 | 239 | 468 | 324 | 570 | 1.65e-127 | 382 |
MsaG016184 | MtrunA17_Chr1g0159461 | 67.206 | 247 | 64 | 3 | 239 | 468 | 346 | 592 | 6.07e-111 | 340 |
MsaG016184 | MtrunA17_Chr1g0159461 | 52.128 | 282 | 94 | 7 | 1 | 248 | 1 | 275 | 4.35e-62 | 212 |
MsaG016184 | MtrunA17_Chr5g0447691 | 41.497 | 294 | 147 | 7 | 198 | 468 | 253 | 544 | 1.25e-65 | 220 |
MsaG016184 | MtrunA17_Chr2g0319091 | 42.915 | 247 | 124 | 3 | 239 | 468 | 333 | 579 | 9.17e-60 | 205 |
MsaG016184 | MtrunA17_Chr3g0101141 | 40.426 | 282 | 142 | 6 | 205 | 468 | 269 | 542 | 7.63e-59 | 202 |
MsaG016184 | MtrunA17_Chr5g0445331 | 42.339 | 248 | 125 | 3 | 239 | 468 | 285 | 532 | 1.88e-58 | 201 |
MsaG016184 | MtrunA17_Chr2g0290241 | 40.948 | 232 | 122 | 2 | 252 | 468 | 194 | 425 | 3.79e-52 | 181 |
MsaG016184 | MtrunA17_Chr4g0076091 | 37.805 | 246 | 136 | 3 | 239 | 467 | 297 | 542 | 6.82e-50 | 178 |
MsaG016184 | MtrunA17_Chr7g0236851 | 39.070 | 215 | 114 | 4 | 268 | 467 | 444 | 656 | 1.79e-39 | 150 |
MsaG016184 | MtrunA17_Chr6g0468561 | 38.914 | 221 | 105 | 7 | 272 | 468 | 448 | 662 | 9.39e-38 | 146 |
MsaG016184 | MtrunA17_Chr7g0224271 | 37.295 | 244 | 134 | 6 | 237 | 468 | 437 | 673 | 1.87e-37 | 145 |
MsaG016184 | MtrunA17_Chr8g0357601 | 32.746 | 284 | 156 | 10 | 205 | 468 | 284 | 552 | 3.12e-30 | 123 |
MsaG016184 | MtrunA17_Chr3g0110971 | 32.443 | 262 | 139 | 9 | 239 | 468 | 332 | 587 | 4.35e-30 | 123 |
MsaG016184 | MtrunA17_Chr8g0376381 | 34.538 | 249 | 139 | 11 | 239 | 468 | 279 | 522 | 7.75e-28 | 116 |
MsaG016184 | MtrunA17_Chr4g0057891 | 31.818 | 220 | 138 | 2 | 261 | 468 | 301 | 520 | 1.29e-26 | 112 |
MsaG016184 | MtrunA17_Chr2g0306641 | 32.669 | 251 | 143 | 10 | 239 | 468 | 242 | 487 | 1.54e-24 | 106 |
MsaG016184 | MtrunA17_Chr4g0031721 | 27.530 | 247 | 161 | 5 | 239 | 467 | 437 | 683 | 3.57e-24 | 105 |
MsaG016184 | MtrunA17_Chr4g0057291 | 34.496 | 258 | 126 | 14 | 239 | 467 | 418 | 661 | 2.41e-23 | 103 |
MsaG016184 | MtrunA17_Chr4g0031711 | 25.806 | 248 | 165 | 4 | 239 | 467 | 485 | 732 | 3.06e-22 | 100 |
MsaG016184 | MtrunA17_Chr4g0031741 | 27.016 | 248 | 162 | 5 | 239 | 467 | 402 | 649 | 1.16e-21 | 98.2 |
MsaG016184 | MtrunA17_Chr2g0328391 | 27.530 | 247 | 154 | 6 | 240 | 467 | 428 | 668 | 1.34e-21 | 98.2 |
MsaG016184 | MtrunA17_Chr4g0038851 | 37.815 | 119 | 73 | 1 | 351 | 468 | 351 | 469 | 1.90e-21 | 96.7 |
MsaG016184 | MtrunA17_Chr2g0328411 | 26.316 | 247 | 164 | 4 | 239 | 467 | 407 | 653 | 3.63e-21 | 96.7 |
MsaG016184 | MtrunA17_Chr7g0238891 | 26.210 | 248 | 165 | 4 | 239 | 468 | 493 | 740 | 5.12e-21 | 96.3 |
MsaG016184 | MtrunA17_Chr2g0328431 | 26.721 | 247 | 163 | 5 | 239 | 467 | 407 | 653 | 1.13e-20 | 95.1 |
MsaG016184 | MtrunA17_Chr4g0031701 | 25.101 | 247 | 166 | 4 | 239 | 466 | 378 | 624 | 5.01e-20 | 93.2 |
MsaG016184 | MtrunA17_Chr4g0031731 | 24.696 | 247 | 167 | 4 | 239 | 466 | 378 | 624 | 1.92e-19 | 91.3 |
MsaG016184 | MtrunA17_Chr3g0085681 | 37.398 | 123 | 75 | 1 | 348 | 468 | 314 | 436 | 3.29e-19 | 89.7 |
MsaG016184 | MtrunA17_Chr7g0245601 | 29.114 | 237 | 150 | 7 | 243 | 468 | 563 | 792 | 4.10e-19 | 90.5 |
MsaG016184 | MtrunA17_Chr5g0396491 | 36.036 | 111 | 70 | 1 | 359 | 468 | 368 | 478 | 1.03e-18 | 88.6 |
MsaG016184 | MtrunA17_Chr2g0328401 | 25.926 | 216 | 143 | 4 | 239 | 437 | 408 | 623 | 3.64e-18 | 87.4 |
MsaG016184 | MtrunA17_Chr2g0328341 | 25.703 | 249 | 161 | 6 | 239 | 467 | 393 | 637 | 9.48e-18 | 86.3 |
MsaG016184 | MtrunA17_Chr4g0039661 | 28.270 | 237 | 141 | 7 | 252 | 468 | 328 | 555 | 1.38e-17 | 85.5 |
MsaG016184 | MtrunA17_Chr2g0328381 | 26.939 | 245 | 155 | 7 | 243 | 467 | 400 | 640 | 1.81e-17 | 85.1 |
MsaG016184 | MtrunA17_Chr5g0401131 | 25.382 | 327 | 203 | 10 | 172 | 468 | 175 | 490 | 1.47e-16 | 82.0 |
MsaG016184 | MtrunA17_Chr5g0401421 | 27.660 | 235 | 130 | 6 | 272 | 467 | 212 | 445 | 1.67e-16 | 81.6 |
MsaG016184 | MtrunA17_Chr3g0085361 | 35.772 | 123 | 76 | 2 | 348 | 468 | 229 | 350 | 3.85e-16 | 79.7 |
MsaG016184 | MtrunA17_Chr2g0328371 | 28.358 | 201 | 122 | 5 | 239 | 421 | 52 | 248 | 5.11e-15 | 74.7 |
MsaG016184 | MtrunA17_Chr1g0183641 | 28.636 | 220 | 118 | 9 | 273 | 467 | 271 | 476 | 6.84e-13 | 70.5 |
MsaG016184 | MtrunA17_Chr2g0323111 | 22.291 | 323 | 207 | 8 | 156 | 467 | 16 | 305 | 1.02e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016184 | AT1G21450.1 | 62.232 | 233 | 72 | 3 | 252 | 468 | 361 | 593 | 1.58e-92 | 292 |
MsaG016184 | AT1G21450.1 | 42.553 | 282 | 116 | 15 | 1 | 253 | 16 | 280 | 7.82e-35 | 137 |
MsaG016184 | AT5G48150.1 | 42.908 | 282 | 135 | 6 | 205 | 468 | 217 | 490 | 6.62e-64 | 214 |
MsaG016184 | AT5G48150.4 | 42.908 | 282 | 135 | 6 | 205 | 468 | 217 | 490 | 6.62e-64 | 214 |
MsaG016184 | AT5G48150.2 | 42.908 | 282 | 135 | 6 | 205 | 468 | 217 | 490 | 6.62e-64 | 214 |
MsaG016184 | AT5G48150.3 | 42.908 | 282 | 135 | 6 | 205 | 468 | 217 | 490 | 6.62e-64 | 214 |
MsaG016184 | AT1G50600.3 | 42.105 | 247 | 126 | 3 | 239 | 468 | 280 | 526 | 2.72e-57 | 198 |
MsaG016184 | AT1G50600.1 | 42.105 | 247 | 126 | 3 | 239 | 468 | 351 | 597 | 5.99e-57 | 199 |
MsaG016184 | AT1G50600.2 | 42.105 | 247 | 126 | 3 | 239 | 468 | 355 | 601 | 6.75e-57 | 199 |
MsaG016184 | AT2G04890.1 | 39.924 | 263 | 131 | 7 | 224 | 468 | 160 | 413 | 1.38e-53 | 185 |
MsaG016184 | AT4G17230.1 | 37.097 | 248 | 139 | 3 | 238 | 468 | 278 | 525 | 1.91e-48 | 174 |
MsaG016184 | AT4G17230.2 | 37.097 | 248 | 139 | 3 | 238 | 468 | 278 | 525 | 1.91e-48 | 174 |
MsaG016184 | AT5G52510.1 | 38.426 | 216 | 116 | 4 | 269 | 468 | 426 | 640 | 7.97e-37 | 143 |
MsaG016184 | AT1G66350.1 | 35.484 | 248 | 131 | 12 | 239 | 468 | 270 | 506 | 3.32e-30 | 123 |
MsaG016184 | AT3G03450.1 | 33.065 | 248 | 144 | 9 | 239 | 468 | 302 | 545 | 3.64e-29 | 120 |
MsaG016184 | AT5G17490.1 | 33.466 | 251 | 137 | 9 | 239 | 468 | 275 | 516 | 1.22e-28 | 119 |
MsaG016184 | AT2G29065.1 | 28.400 | 250 | 158 | 7 | 239 | 467 | 378 | 627 | 3.76e-24 | 106 |
MsaG016184 | AT2G01570.1 | 31.727 | 249 | 145 | 11 | 239 | 468 | 339 | 581 | 2.30e-23 | 103 |
MsaG016184 | AT1G07530.1 | 26.724 | 232 | 154 | 2 | 252 | 467 | 533 | 764 | 3.60e-23 | 103 |
MsaG016184 | AT1G14920.1 | 30.645 | 248 | 149 | 10 | 239 | 468 | 287 | 529 | 6.84e-23 | 102 |
MsaG016184 | AT2G37650.2 | 26.609 | 233 | 155 | 4 | 252 | 468 | 469 | 701 | 1.91e-22 | 101 |
MsaG016184 | AT2G37650.1 | 26.609 | 233 | 155 | 4 | 252 | 468 | 481 | 713 | 2.17e-22 | 100 |
MsaG016184 | AT1G07520.3 | 26.271 | 236 | 153 | 6 | 252 | 467 | 459 | 693 | 5.94e-22 | 99.8 |
MsaG016184 | AT1G07520.1 | 26.271 | 236 | 153 | 6 | 252 | 467 | 458 | 692 | 6.15e-22 | 99.8 |
MsaG016184 | AT1G07520.2 | 26.271 | 236 | 153 | 6 | 252 | 467 | 294 | 528 | 1.74e-21 | 97.8 |
MsaG016184 | AT1G07520.4 | 26.271 | 236 | 153 | 6 | 252 | 467 | 294 | 528 | 1.74e-21 | 97.8 |
MsaG016184 | AT5G59450.1 | 25.200 | 250 | 167 | 4 | 239 | 468 | 349 | 598 | 8.00e-21 | 95.9 |
MsaG016184 | AT3G54220.1 | 27.758 | 281 | 174 | 8 | 200 | 467 | 385 | 649 | 3.29e-20 | 94.4 |
MsaG016184 | AT1G50420.1 | 40.179 | 112 | 64 | 2 | 359 | 468 | 369 | 479 | 6.38e-20 | 92.8 |
MsaG016184 | AT2G29060.1 | 26.613 | 248 | 163 | 5 | 239 | 467 | 444 | 691 | 5.21e-19 | 90.5 |
MsaG016184 | AT2G29060.2 | 26.180 | 233 | 155 | 4 | 252 | 467 | 422 | 654 | 5.48e-19 | 90.5 |
MsaG016184 | AT5G66770.1 | 30.709 | 254 | 147 | 9 | 239 | 468 | 336 | 584 | 6.05e-19 | 90.1 |
MsaG016184 | AT3G46600.1 | 24.597 | 248 | 169 | 3 | 239 | 468 | 332 | 579 | 2.30e-18 | 88.2 |
MsaG016184 | AT3G46600.2 | 25.806 | 248 | 166 | 5 | 239 | 468 | 124 | 371 | 2.71e-18 | 86.7 |
MsaG016184 | AT3G46600.3 | 25.806 | 248 | 166 | 5 | 239 | 468 | 300 | 547 | 3.26e-18 | 87.8 |
MsaG016184 | AT3G50650.1 | 29.046 | 241 | 143 | 6 | 252 | 468 | 306 | 542 | 3.42e-17 | 84.7 |
MsaG016184 | AT4G37650.1 | 28.125 | 224 | 135 | 9 | 269 | 468 | 308 | 529 | 9.31e-17 | 83.2 |
MsaG016184 | AT1G63100.1 | 26.996 | 263 | 147 | 6 | 239 | 467 | 377 | 628 | 5.01e-16 | 81.3 |
MsaG016184 | AT1G63100.2 | 28.959 | 221 | 126 | 5 | 239 | 439 | 402 | 611 | 5.60e-16 | 80.9 |
MsaG016184 | AT1G55580.1 | 24.336 | 226 | 150 | 4 | 264 | 468 | 220 | 445 | 3.36e-15 | 78.2 |
Find 101 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTATGAGAATAAGAAATT+TGG | 0.178504 | 3:-95064765 | None:intergenic |
GGTACAACCATGTCATTAAT+TGG | 0.248675 | 3:+95064658 | None:intergenic |
CCATGTAGGCTGCAATTCTT+TGG | 0.255636 | 3:-95065362 | None:intergenic |
CACCAAATCTGATCCGAAAT+TGG | 0.280682 | 3:-95064935 | None:intergenic |
GGTATGAAGTCGCGGGAAAA+TGG | 0.287860 | 3:+95066161 | MsaT016184.1:CDS |
GCTACTGATGCTGCTAATAT+TGG | 0.307471 | 3:-95065193 | None:intergenic |
TCCACGACCGTTACAAGTTT+TGG | 0.308347 | 3:-95065944 | None:intergenic |
AAGAAATAACGAAAATTTCT+AGG | 0.316566 | 3:+95065223 | MsaT016184.1:CDS |
GTCCAATTTCGGATCAGATT+TGG | 0.328151 | 3:+95064933 | MsaT016184.1:CDS |
CGCCGCTCGCCTCGCTGAAC+CGG | 0.333181 | 3:+95065395 | MsaT016184.1:CDS |
TTGATCCTAACATTATTGAT+TGG | 0.340862 | 3:+95065094 | MsaT016184.1:CDS |
CTTATGAGAATAAGAAATTT+GGG | 0.359390 | 3:-95064764 | None:intergenic |
TCAGCACCACGTTGCCTTGT+TGG | 0.374411 | 3:-95064907 | None:intergenic |
TCGATGCTTGATTGTCGAAT+TGG | 0.376588 | 3:+95065814 | MsaT016184.1:CDS |
GGTGCTGATCAGTCCAATTT+CGG | 0.378562 | 3:+95064922 | MsaT016184.1:CDS |
TACAAGATAAAGGAGGAAAA+AGG | 0.380442 | 3:+95066280 | MsaT016184.1:CDS |
TCACTCACATTTGTGCTCAT+TGG | 0.383131 | 3:-95066220 | None:intergenic |
ATTGAGGAAGAAGAGGAATA+TGG | 0.391911 | 3:+95065051 | MsaT016184.1:CDS |
TGATCCTAACATTATTGATT+GGG | 0.392056 | 3:+95065095 | MsaT016184.1:CDS |
CGACGAATTGTCTCAATTCA+AGG | 0.402603 | 3:+95065330 | MsaT016184.1:CDS |
GGCAAGGGATATTGTTAATA+CGG | 0.403210 | 3:+95066108 | MsaT016184.1:CDS |
CATTCATAAAGAAGTTGCTT+GGG | 0.414263 | 3:-95065249 | None:intergenic |
AACAGCAGCATATTCTGAAT+TGG | 0.421315 | 3:-95065129 | None:intergenic |
CTGTGATAGGTACAAGATAA+AGG | 0.425096 | 3:+95066270 | MsaT016184.1:CDS |
GGGTTAACATCGATTTCCTT+TGG | 0.428305 | 3:-95064730 | None:intergenic |
GTGAATTCAATTGAAGTTGA+TGG | 0.432801 | 3:+95064973 | MsaT016184.1:CDS |
TCAGCCCAATCAATAATGTT+AGG | 0.434921 | 3:-95065099 | None:intergenic |
CCATCACATGTTAGATTGAC+CGG | 0.440788 | 3:+95065652 | MsaT016184.1:intron |
ATGCTGCTAATATTGGAATC+TGG | 0.446519 | 3:-95065186 | None:intergenic |
CATGTAGGCTGCAATTCTTT+GGG | 0.448246 | 3:-95065361 | None:intergenic |
AAGTTAAGTTGTACTGTGAT+AGG | 0.450787 | 3:+95066257 | MsaT016184.1:CDS |
CCAAAGAATTGCAGCCTACA+TGG | 0.451697 | 3:+95065362 | MsaT016184.1:CDS |
TCACAGTTGAAACGCTCGTC+AGG | 0.453842 | 3:-95065880 | None:intergenic |
GAGATCAAAACTAGAAGCAT+TGG | 0.459866 | 3:+95065002 | MsaT016184.1:CDS |
TCTGGAGACGAATACTCCTT+TGG | 0.473491 | 3:-95065168 | None:intergenic |
TTCGGATCAGATTTGGTGAT+GGG | 0.474390 | 3:+95064940 | MsaT016184.1:CDS |
TACTCTTCCTAGAGAGAGCC+AGG | 0.477900 | 3:+95066057 | MsaT016184.1:CDS |
AGCATATTCTGAATTGGATC+AGG | 0.480387 | 3:-95065123 | None:intergenic |
TTGCATGTGAAGGTGAAGAT+AGG | 0.487421 | 3:+95066131 | MsaT016184.1:CDS |
TCTCAACATTCATCCTATCC+TGG | 0.491515 | 3:-95066075 | None:intergenic |
GTTGGAGGACTAAAGATCAT+AGG | 0.492091 | 3:+95065706 | MsaT016184.1:CDS |
ACGAGACCAACTTCTTCGCT+TGG | 0.503960 | 3:+95065907 | MsaT016184.1:CDS |
ACATTCATAAAGAAGTTGCT+TGG | 0.509000 | 3:-95065250 | None:intergenic |
ATCCTATCCTGGCTCTCTCT+AGG | 0.512100 | 3:-95066064 | None:intergenic |
CGTCAGGCATGTGATGAAGC+TGG | 0.517665 | 3:-95065864 | None:intergenic |
TCTTTACCAAGCGAAGAAGT+TGG | 0.520115 | 3:-95065913 | None:intergenic |
TCGCGGGAAAATGGAGAGCT+AGG | 0.521293 | 3:+95066170 | MsaT016184.1:CDS |
TCTGTGCAGCGATCCGTTGG+AGG | 0.533052 | 3:+95065691 | MsaT016184.1:CDS |
GTAGAGATGTCAGAACTAGA+TGG | 0.537559 | 3:-95064874 | None:intergenic |
GAGTCTGTGCAGCGATCCGT+TGG | 0.538684 | 3:+95065688 | MsaT016184.1:CDS |
TCCAAAACTTGTAACGGTCG+TGG | 0.541218 | 3:+95065943 | MsaT016184.1:CDS |
AGAGCTAGGATGACAATGGC+TGG | 0.548519 | 3:+95066184 | MsaT016184.1:CDS |
TTTGAATCCAAAACTTGTAA+CGG | 0.552516 | 3:+95065937 | MsaT016184.1:CDS |
ACTTGATTGTTGCTTCAGCA+TGG | 0.554425 | 3:+95066332 | MsaT016184.1:CDS |
TAGTGACATTGAGGAAGAAG+AGG | 0.556415 | 3:+95065044 | MsaT016184.1:CDS |
ACGGATCGCTGCACAGACTC+AGG | 0.557758 | 3:-95065685 | None:intergenic |
GAACAACTAGCAGAAACACT+TGG | 0.558635 | 3:+95065739 | MsaT016184.1:CDS |
ACTTGATGATAGTGACATTG+AGG | 0.558721 | 3:+95065035 | MsaT016184.1:CDS |
TTTCGGATCAGATTTGGTGA+TGG | 0.559466 | 3:+95064939 | MsaT016184.1:CDS |
ATATGGTAATTCTCAAAGCA+TGG | 0.562265 | 3:+95065068 | MsaT016184.1:CDS |
CATCACATGTTAGATTGACC+GGG | 0.567991 | 3:+95065653 | MsaT016184.1:intron |
CTCGTAACTCTCGCTCGAGT+AGG | 0.572630 | 3:-95064812 | None:intergenic |
TTGAGAGGCAATGCTTGGCA+AGG | 0.577561 | 3:+95066092 | MsaT016184.1:CDS |
AATTGCAGCCTACATGGTGG+AGG | 0.577669 | 3:+95065368 | MsaT016184.1:CDS |
TAGGCTGCAATTCTTTGGGA+AGG | 0.583102 | 3:-95065357 | None:intergenic |
CAAAACTAGAAGCATTGGAG+AGG | 0.583413 | 3:+95065007 | MsaT016184.1:CDS |
GAATGTTGAGAGGCAATGCT+TGG | 0.583862 | 3:+95066087 | MsaT016184.1:CDS |
CTACAAGTTTCATGCCAACA+AGG | 0.584293 | 3:+95064893 | MsaT016184.1:CDS |
TGTGCTACTGCAATTTCAGA+AGG | 0.584377 | 3:+95065270 | MsaT016184.1:CDS |
AATACTCCTTTGGTGAGTCA+TGG | 0.604923 | 3:-95065158 | None:intergenic |
CACTAAGCTCAAATCGCCAA+AGG | 0.608012 | 3:+95064714 | MsaT016184.1:CDS |
TATGATCTTTAGTCCTCCAA+CGG | 0.609253 | 3:-95065704 | None:intergenic |
TTCCGGTTCAGCGAGGCGAG+CGG | 0.609357 | 3:-95065397 | None:intergenic |
ATTCATAAAGAAGTTGCTTG+GGG | 0.610084 | 3:-95065248 | None:intergenic |
GTTAATACGGTTGCATGTGA+AGG | 0.612068 | 3:+95066121 | MsaT016184.1:CDS |
ATAGAACGGTATGAAGTCGC+GGG | 0.612894 | 3:+95066154 | MsaT016184.1:CDS |
AGACTCAGGATCATCAATCC+CGG | 0.614792 | 3:-95065671 | None:intergenic |
GATAGAACGGTATGAAGTCG+CGG | 0.616637 | 3:+95066153 | MsaT016184.1:CDS |
CCTTTGGTGAGTCATGGTCA+TGG | 0.621918 | 3:-95065152 | None:intergenic |
AAGGTGAAGATAGGATAGAA+CGG | 0.625100 | 3:+95066140 | MsaT016184.1:CDS |
TTCCTAGAGAGAGCCAGGAT+AGG | 0.625909 | 3:+95066062 | MsaT016184.1:CDS |
TCGAATTGGAGAAGCTCTTG+TGG | 0.628740 | 3:+95065828 | MsaT016184.1:CDS |
TGAGAGGCAATGCTTGGCAA+GGG | 0.635494 | 3:+95066093 | MsaT016184.1:CDS |
AAAACTAGAAGCATTGGAGA+GGG | 0.649054 | 3:+95065008 | MsaT016184.1:CDS |
AGAAGATCCAATTAATGACA+TGG | 0.650375 | 3:-95064665 | None:intergenic |
ATTGCAGCCTACATGGTGGA+GGG | 0.650477 | 3:+95065369 | MsaT016184.1:CDS |
GGCGAGTCCCTCCACCATGT+AGG | 0.652264 | 3:-95065376 | None:intergenic |
TTCATAAAGAAGTTGCTTGG+GGG | 0.656482 | 3:-95065247 | None:intergenic |
ATGAGAATAAGAAATTTGGG+AGG | 0.658872 | 3:-95064761 | None:intergenic |
AGGATAGGATGAATGTTGAG+AGG | 0.660140 | 3:+95066077 | MsaT016184.1:CDS |
AATTTCAGAAGGAAATGAAG+AGG | 0.662867 | 3:+95065281 | MsaT016184.1:CDS |
ATGGAGAGCTAGGATGACAA+TGG | 0.667953 | 3:+95066180 | MsaT016184.1:CDS |
CCATGACCATGACTCACCAA+AGG | 0.671972 | 3:+95065152 | MsaT016184.1:CDS |
CTTGAATTGAGACAATTCGT+CGG | 0.672967 | 3:-95065329 | None:intergenic |
AATTTCGAGCGGTCTCATCG+AGG | 0.679065 | 3:+95065773 | MsaT016184.1:CDS |
TTTGTCATTTGAATTTCGAG+CGG | 0.680630 | 3:+95065762 | MsaT016184.1:CDS |
AAGAATTGCAGCCTACATGG+TGG | 0.682524 | 3:+95065365 | MsaT016184.1:CDS |
TCGACAATCAAGCATCGATG+AGG | 0.688280 | 3:-95065809 | None:intergenic |
TGATAGGTACAAGATAAAGG+AGG | 0.692576 | 3:+95066273 | MsaT016184.1:CDS |
TTCATGCCAACAAGGCAACG+TGG | 0.722675 | 3:+95064901 | MsaT016184.1:CDS |
TGATTGTTGCTTCAGCATGG+AGG | 0.748962 | 3:+95066335 | MsaT016184.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 95064667 | 95066360 | 95064667 | ID=MsaG016184 |
Chr3 | mRNA | 95064667 | 95066360 | 95064667 | ID=MsaT016184.1;Parent=MsaG016184 |
Chr3 | exon | 95064667 | 95065421 | 95064667 | ID=MsaT016184.1.exon1;Parent=MsaT016184.1 |
Chr3 | CDS | 95064667 | 95065421 | 95064667 | ID=cds.MsaT016184.1;Parent=MsaT016184.1 |
Chr3 | exon | 95065666 | 95065973 | 95065666 | ID=MsaT016184.1.exon2;Parent=MsaT016184.1 |
Chr3 | CDS | 95065666 | 95065973 | 95065666 | ID=cds.MsaT016184.1;Parent=MsaT016184.1 |
Chr3 | exon | 95066017 | 95066360 | 95066017 | ID=MsaT016184.1.exon3;Parent=MsaT016184.1 |
Chr3 | CDS | 95066017 | 95066360 | 95066017 | ID=cds.MsaT016184.1;Parent=MsaT016184.1 |
Gene Sequence |
Protein sequence |