AlfalfaGEDB | MsaG016266

M. sativa ssp. caerulea / MsaG016266

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016266	XP_003602234.1	98.221	281	5	0	1	281	1	281	0.0	571

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016266	G7J6V3	98.221	281	5	0	1	281	1	281	0.0	571

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TFs/TRs:

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Gene ID	Type	Classification
MsaG016266	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG016266	MsaG032700	0.805788	1.907681e-49	2.945734e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016266	MtrunA17_Chr3g0126721	98.221	281	5	0	1	281	1	281	0.0	571
MsaG016266	MtrunA17_Chr1g0147111	72.028	286	70	5	1	280	1	282	4.86e-143	403
MsaG016266	MtrunA17_Chr8g0387241	49.412	85	41	1	192	274	185	269	6.37e-20	87.8
MsaG016266	MtrunA17_Chr4g0030421	45.783	83	41	2	192	274	1	79	1.84e-16	74.3
MsaG016266	MtrunA17_Chr1g0168401	42.268	97	42	2	192	274	267	363	9.94e-16	76.6
MsaG016266	MtrunA17_Chr5g0397361	41.573	89	48	1	192	280	139	223	2.87e-15	73.6
MsaG016266	MtrunA17_Chr1g0186171	65.306	49	17	0	226	274	312	360	3.57e-15	75.1
MsaG016266	MtrunA17_Chr2g0327621	57.692	52	22	0	226	277	151	202	1.26e-14	72.0
MsaG016266	MtrunA17_Chr2g0311591	58.000	50	21	0	226	275	166	215	1.21e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016266	AT5G53420.1	49.291	282	115	10	1	274	1	262	7.56e-82	247
MsaG016266	AT4G27900.1	49.458	277	118	9	1	274	1	258	2.52e-80	243
MsaG016266	AT4G27900.2	49.458	277	118	9	1	274	1	258	2.52e-80	243
MsaG016266	AT5G53420.2	54.229	201	67	8	81	274	1	183	1.66e-59	187
MsaG016266	AT5G53420.5	54.229	201	67	8	81	274	1	183	1.66e-59	187
MsaG016266	AT5G53420.4	54.229	201	67	8	81	274	1	183	1.66e-59	187
MsaG016266	AT5G53420.3	41.364	220	106	8	1	212	1	205	2.52e-45	152
MsaG016266	AT1G63820.1	45.918	98	38	1	192	274	139	236	4.37e-19	85.5
MsaG016266	AT5G41380.1	47.253	91	36	2	192	274	173	259	5.41e-18	82.4
MsaG016266	AT1G04500.4	67.347	49	16	0	226	274	284	332	4.84e-16	77.8

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Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGAAGAATCTGATC+AGG	0.470069	3:-96103201	MsaT016266.1:CDS
AAAGGATCTATTTGAAAAGG+CGG	0.598414	3:-96104229	MsaT016266.1:CDS
AAATTGTGTAGATAAGACCA+TGG	0.672601	3:+96105869	None:intergenic
AAGAAGACAAAGAGGAATTT+TGG	0.219086	3:-96103677	MsaT016266.1:CDS
AAGGATCTATTTGAAAAGGC+GGG	0.547844	3:-96104228	MsaT016266.1:CDS
AATAATGGCATATCAGGAAG+TGG	0.576682	3:+96104123	None:intergenic
AATCTATTCCTGAGATACCA+AGG	0.616072	3:+96104025	None:intergenic
AATTGTGTAGATAAGACCAT+GGG	0.640817	3:+96105870	None:intergenic
ACAGGAACAAGAAGACAAAG+AGG	0.587806	3:-96103685	MsaT016266.1:CDS
ACATTGCAGAAAACTGAACA+AGG	0.668264	3:+96104442	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	96103187	96105918	96103187	ID=MsaG016266
Chr3	mRNA	96103187	96105918	96103187	ID=MsaT016266.1;Parent=MsaG016266
Chr3	exon	96103187	96103279	96103187	ID=MsaT016266.1.exon4;Parent=MsaT016266.1
Chr3	CDS	96103187	96103279	96103187	ID=cds.MsaT016266.1;Parent=MsaT016266.1
Chr3	exon	96103664	96103810	96103664	ID=MsaT016266.1.exon3;Parent=MsaT016266.1
Chr3	CDS	96103664	96103810	96103664	ID=cds.MsaT016266.1;Parent=MsaT016266.1
Chr3	exon	96103975	96104469	96103975	ID=MsaT016266.1.exon2;Parent=MsaT016266.1
Chr3	CDS	96103975	96104469	96103975	ID=cds.MsaT016266.1;Parent=MsaT016266.1
Chr3	exon	96105808	96105918	96105808	ID=MsaT016266.1.exon1;Parent=MsaT016266.1
Chr3	CDS	96105808	96105918	96105808	ID=cds.MsaT016266.1;Parent=MsaT016266.1

Gene Sequence

>MsaT016266.1

ATGTATAGAGAAAATGGTCTTCTTTTCCCATGGTCTTATCTACACAATTTCTCTCAAGAGCTTCATCAACTTGAAGACTACTACAGAAACCAGAAGTTCAATGCTTCAATGAGTGACCTTGTTCAGTTTTCTGCAATGTCCGAGTATGATTTTGCAGCAGAAGGAGATCTGTTCAAAGCACCTGAACCGATGATTGAAGAGTCAGGCATTGACCTTGATCCCATGACAGCAGCCATCTCAATGATATCTTGTGGCGAAGATGTCAAGTCCACAGATATTTCTATTCTTCAAAACGAACAGCTTCTCAGCGATGTATTCTATGATTGCAAAAAGGATCTATTTGAAAAGGCGGGAATGGAGTCACCGCTCTCTGAGATTCTAGAAATCAAGGTTCCATTACTGAACATTGACGAGAACATAATTCAAGAAAACAAGCCACTTCCTGATATGCCATTATTACCGAAGAGCGTTAGCTCAGGAAGTTTAAGTTCGATGGATTGGATGCATGGATCTGCTGCAATGAAGCCTGCTTTCCTTGGTATCTCAGGAATAGATTTTGATGCGGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTCTTGGCAATGCTAATATGAACGTTGTCCAATCTCCCGTGGAGAGGCCGTTTTTTACCAGTAACTGCAGCAGTGAGGAGCGCCTACAAAAGCTCTCTAGATACAGGAACAAGAAGACAAAGAGGAATTTTGGAAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTAGCTGACAGTCAACCAAGAGTCCGTGGAAGATTTGCAAAGAATGAAGAATCTGATCAGGCAAAGAAGGACTGA

Protein sequence

>MsaT016266.1

MYRENGLLFPWSYLHNFSQELHQLEDYYRNQKFNASMSDLVQFSAMSEYDFAAEGDLFKAPEPMIEESGIDLDPMTAAISMISCGEDVKSTDISILQNEQLLSDVFYDCKKDLFEKAGMESPLSEILEIKVPLLNIDENIIQENKPLPDMPLLPKSVSSGSLSSMDWMHGSAAMKPAFLGISGIDFDAVYGMRRSFSEGDIKTLGNANMNVVQSPVERPFFTSNCSSEERLQKLSRYRNKKTKRNFGRKIKYACRKALADSQPRVRGRFAKNEESDQAKKD*