AlfalfaGEDB | MsaG016333

M. sativa ssp. caerulea / MsaG016333

KEGG: K09338
GO: -
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016333	QNO30513.1	99.130	230	2	0	7	236	16	245	2.82e-167	471

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016333	sp\|P46897\|ATHB7_ARATH	42.324	241	118	5	16	236	19	258	1.31e-44	153

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016333	A0A7G9X583	99.130	230	2	0	7	236	16	245	1.35e-167	471

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TFs/TRs:

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Gene ID	Type	Classification
MsaG016333	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016333	MtrunA17_Chr3g0127511	98.261	230	4	0	7	236	16	245	1.54e-169	466
MsaG016333	MtrunA17_Chr8g0346251	43.750	208	109	4	33	236	45	248	3.11e-48	159
MsaG016333	MtrunA17_Chr6g0450991	57.447	94	40	0	28	121	66	159	6.21e-30	112
MsaG016333	MtrunA17_Chr4g0060031	56.122	98	43	0	28	125	94	191	3.38e-29	112
MsaG016333	MtrunA17_Chr6g0453021	56.383	94	41	0	28	121	95	188	4.81e-29	110
MsaG016333	MtrunA17_Chr8g0362151	54.255	94	43	0	28	121	76	169	2.97e-28	108
MsaG016333	MtrunA17_Chr5g0415941	55.435	92	41	0	30	121	88	179	1.15e-26	105
MsaG016333	MtrunA17_Chr8g0381741	55.435	92	41	0	30	121	55	146	1.74e-26	104
MsaG016333	MtrunA17_Chr5g0416391	54.255	94	43	0	28	121	76	169	1.96e-26	103
MsaG016333	MtrunA17_Chr1g0179581	51.648	91	37	1	28	118	27	110	3.24e-26	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016333	AT2G46680.1	42.324	241	118	5	16	236	19	258	1.34e-45	153
MsaG016333	AT2G46680.2	43.162	234	114	5	21	236	24	256	1.46e-44	150
MsaG016333	AT3G61890.1	68.132	91	29	0	32	122	33	123	1.40e-38	134
MsaG016333	AT3G01470.1	43.382	136	77	0	28	163	67	202	1.09e-29	112
MsaG016333	AT2G22430.1	56.383	94	41	0	28	121	61	154	3.96e-29	111
MsaG016333	AT4G40060.1	50.485	103	51	0	28	130	58	160	1.87e-28	109
MsaG016333	AT1G69780.1	54.255	94	43	0	28	121	84	177	6.43e-28	108
MsaG016333	AT5G15150.1	53.191	94	44	0	28	121	114	207	2.66e-26	104
MsaG016333	AT2G18550.1	50.943	106	45	1	30	128	62	167	5.46e-26	101
MsaG016333	AT5G65310.2	51.064	94	46	0	28	121	53	146	2.67e-25	101

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Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAGAAGCACAACA+TGG	0.668449	3:-96864770	MsaT016333.1:CDS
AAACATCGCATGATGGAGGA+AGG	0.574577	3:-96864923	MsaT016333.1:CDS
AACATCGCATGATGGAGGAA+GGG	0.628539	3:-96864922	MsaT016333.1:CDS
AACATGGACAGAGAAAATTG+AGG	0.710156	3:-96864754	MsaT016333.1:CDS
AACCATATAGCAACTTGTCT+AGG	0.580258	3:+96865351	None:intergenic
AAGAAGAGAATATTCATGAA+GGG	0.590509	3:-96865564	None:intergenic
AAGACTCTTTCTCTTCCTTA+AGG	0.407960	3:+96865232	None:intergenic
AAGGAAAATAGCACAGAAGA+TGG	0.540540	3:-96864894	MsaT016333.1:CDS
AATATTCATGAAGGGTTCAA+AGG	0.493550	3:-96865556	None:intergenic
AATCATGCAATAGTTCTCAA+TGG	0.553811	3:-96864629	MsaT016333.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	96864611	96865571	96864611	ID=MsaG016333
Chr3	mRNA	96864611	96865571	96864611	ID=MsaT016333.1;Parent=MsaG016333
Chr3	exon	96864611	96864970	96864611	ID=MsaT016333.1.exon2;Parent=MsaT016333.1
Chr3	CDS	96864611	96864970	96864611	ID=cds.MsaT016333.1;Parent=MsaT016333.1
Chr3	exon	96865221	96865571	96865221	ID=MsaT016333.1.exon1;Parent=MsaT016333.1
Chr3	CDS	96865221	96865571	96865221	ID=cds.MsaT016333.1;Parent=MsaT016333.1

Gene Sequence

>MsaT016333.1

ATGAAGGGTTCAAAGGAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCATTGGAATGCATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCGCATGATGGAGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAATTGCAGGTTTGAAGAAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTATTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA

Protein sequence

>MsaT016333.1

MKGSKENVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNNCRFEETKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT*