AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG016391

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016391 MtrunA17_Chr3g0128151 92.969 512 15 2 1 491 1 512 0.0 983
MsaG016391 MtrunA17_Chr5g0428991 52.734 512 196 9 1 487 1 491 3.28e-177 512
MsaG016391 MtrunA17_Chr3g0128111 84.615 208 25 1 25 232 45 245 9.63e-129 374
MsaG016391 MtrunA17_Chr6g0481091 47.577 227 112 3 17 239 1 224 1.10e-61 201
MsaG016391 MtrunA17_Chr3g0109821 61.688 154 58 1 21 173 5 158 1.25e-59 207
MsaG016391 MtrunA17_Chr5g0433781 60.131 153 61 0 21 173 5 157 2.60e-57 201
MsaG016391 MtrunA17_Chr2g0309891 49.029 206 78 4 21 220 5 189 2.98e-57 193
MsaG016391 MtrunA17_Chr5g0400461 55.828 163 62 3 21 176 5 164 4.02e-54 185
MsaG016391 MtrunA17_Chr1g0201021 52.601 173 79 2 1 173 1 170 3.34e-51 183
MsaG016391 MtrunA17_Chr4g0054791 54.268 164 70 3 21 180 5 167 5.87e-51 176
MsaG016391 MtrunA17_Chr8g0345691 54.839 155 61 4 18 169 8 156 7.04e-51 179
MsaG016391 MtrunA17_Chr8g0364791 50.641 156 77 0 17 172 1 156 3.14e-50 177
MsaG016391 MtrunA17_Chr8g0345671 56.954 151 56 5 22 169 11 155 7.27e-50 175
MsaG016391 MtrunA17_Chr3g0092671 53.797 158 70 3 17 173 1 156 1.21e-49 178
MsaG016391 MtrunA17_Chr3g0091921 45.498 211 101 4 22 221 16 223 1.46e-49 172
MsaG016391 MtrunA17_Chr5g0398971 50.000 156 75 3 19 172 4 158 1.80e-49 173
MsaG016391 MtrunA17_Chr4g0018391 51.282 156 73 3 18 172 3 156 2.06e-49 172
MsaG016391 MtrunA17_Chr1g0197361 54.667 150 66 2 25 173 11 159 2.31e-49 178
MsaG016391 MtrunA17_Chr4g0060931 54.902 153 65 2 22 172 17 167 2.36e-49 173
MsaG016391 MtrunA17_Chr1g0197351 54.375 160 67 1 21 174 41 200 3.32e-49 176
MsaG016391 MtrunA17_Chr3g0130101 42.654 211 97 3 25 220 10 211 6.61e-49 172
MsaG016391 MtrunA17_Chr4g0056541 46.061 165 86 2 18 181 3 165 2.53e-48 170
MsaG016391 MtrunA17_Chr6g0453451 52.727 165 67 3 22 184 20 175 2.93e-48 169
MsaG016391 MtrunA17_Chr8g0372121 49.673 153 74 2 22 173 6 156 3.35e-48 168
MsaG016391 MtrunA17_Chr7g0217721 43.860 228 95 7 25 232 22 236 2.10e-47 167
MsaG016391 MtrunA17_Chr6g0484441 52.318 151 68 2 22 172 5 151 2.97e-47 166
MsaG016391 MtrunA17_Chr4g0017921 50.314 159 73 3 18 174 4 158 5.59e-47 166
MsaG016391 MtrunA17_Chr8g0384201 47.436 156 82 0 17 172 1 156 7.26e-47 169
MsaG016391 MtrunA17_Chr5g0405211 50.658 152 72 2 22 172 8 157 1.11e-46 166
MsaG016391 MtrunA17_Chr7g0217711 58.871 124 49 1 25 148 22 143 2.19e-46 159
MsaG016391 MtrunA17_Chr8g0361731 47.273 165 74 4 25 178 17 179 4.94e-46 165
MsaG016391 MtrunA17_Chr2g0309331 49.359 156 75 3 21 174 9 162 5.89e-46 163
MsaG016391 MtrunA17_Chr2g0318081 48.750 160 80 1 17 176 11 168 1.18e-45 163
MsaG016391 MtrunA17_Chr6g0461661 47.977 173 76 4 22 190 18 180 1.39e-45 163
MsaG016391 MtrunA17_Chr3g0139331 54.545 154 64 3 21 172 10 159 1.40e-45 162
MsaG016391 MtrunA17_Chr4g0042561 50.955 157 67 3 22 172 9 161 1.70e-45 160
MsaG016391 MtrunA17_Chr1g0200561 50.658 152 72 2 22 172 19 168 1.77e-45 162
MsaG016391 MtrunA17_Chr8g0384721 37.410 278 134 10 22 265 7 278 9.96e-45 158
MsaG016391 MtrunA17_Chr3g0130731 45.902 183 78 6 22 197 7 175 1.25e-44 158
MsaG016391 MtrunA17_Chr5g0417001 45.732 164 77 4 25 178 17 178 1.26e-44 161
MsaG016391 MtrunA17_Chr2g0316971 50.617 162 64 4 22 174 23 177 1.66e-44 160
MsaG016391 MtrunA17_Chr1g0147421 52.903 155 66 4 21 172 26 176 2.43e-44 159
MsaG016391 MtrunA17_Chr5g0417791 50.000 162 65 3 22 174 3 157 2.97e-44 156
MsaG016391 MtrunA17_Chr3g0124761 50.641 156 67 4 22 172 7 157 4.99e-44 157
MsaG016391 MtrunA17_Chr7g0253011 50.920 163 62 4 22 173 17 172 5.20e-44 159
MsaG016391 MtrunA17_Chr8g0359921 50.920 163 74 3 17 176 9 168 5.36e-44 158
MsaG016391 MtrunA17_Chr7g0252971 45.652 184 80 4 22 187 8 189 1.27e-43 157
MsaG016391 MtrunA17_Chr4g0076731 49.664 149 70 3 25 172 57 201 2.23e-43 159
MsaG016391 MtrunA17_Chr2g0318101 45.181 166 76 3 22 174 15 178 5.01e-43 156
MsaG016391 MtrunA17_Chr6g0453131 35.496 262 142 7 14 264 7 252 5.46e-43 157
MsaG016391 MtrunA17_Chr2g0312321 48.750 160 67 4 22 175 11 161 5.70e-43 154
MsaG016391 MtrunA17_Chr8g0346001 43.787 169 85 2 14 172 7 175 4.82e-42 155
MsaG016391 MtrunA17_Chr7g0214071 50.000 154 66 4 22 172 15 160 2.06e-41 149
MsaG016391 MtrunA17_Chr2g0321741 50.000 144 59 3 43 181 13 148 7.28e-41 150
MsaG016391 MtrunA17_Chr4g0047841 44.444 180 73 4 22 176 15 192 1.31e-40 149
MsaG016391 MtrunA17_Chr7g0263931 43.229 192 97 5 22 203 11 200 2.36e-40 148
MsaG016391 MtrunA17_Chr8g0345731 53.030 132 55 4 22 147 24 154 5.14e-40 142
MsaG016391 MtrunA17_Chr3g0144271 55.385 130 53 3 22 148 23 150 1.14e-39 148
MsaG016391 MtrunA17_Chr2g0326361 45.251 179 85 6 21 192 13 185 1.80e-39 145
MsaG016391 MtrunA17_Chr8g0345711 50.355 141 66 3 20 157 10 149 2.26e-39 140
MsaG016391 MtrunA17_Chr1g0183741 47.403 154 73 3 21 172 9 156 2.28e-39 144
MsaG016391 MtrunA17_Chr3g0113001 38.739 222 121 6 77 286 18 236 1.47e-37 139
MsaG016391 MtrunA17_Chr7g0261411 47.368 152 72 3 21 170 9 154 2.13e-37 139
MsaG016391 MtrunA17_Chr8g0385991 43.195 169 81 4 19 178 11 173 4.54e-37 136
MsaG016391 MtrunA17_Chr4g0038751 45.806 155 73 4 21 172 15 161 1.09e-36 137
MsaG016391 MtrunA17_Chr5g0442771 46.250 160 72 5 25 172 21 178 1.20e-36 137
MsaG016391 MtrunA17_Chr2g0311651 40.984 183 87 6 9 173 8 187 2.44e-36 136
MsaG016391 MtrunA17_Chr2g0311661 40.556 180 86 6 12 173 10 186 1.13e-35 134
MsaG016391 MtrunA17_Chr3g0131911 42.353 170 84 3 19 178 11 176 3.32e-35 131
MsaG016391 MtrunA17_Chr8g0345741 46.099 141 67 4 33 170 2 136 1.29e-33 124
MsaG016391 MtrunA17_Chr8g0345701 50.000 144 52 6 21 147 6 146 4.22e-33 124
MsaG016391 MtrunA17_Chr8g0345721 41.026 156 59 4 24 147 37 191 3.76e-31 119
MsaG016391 MtrunA17_Chr4g0026141 40.764 157 84 5 22 170 5 160 2.24e-30 119
MsaG016391 MtrunA17_Chr2g0321631 40.385 156 85 5 23 170 5 160 8.45e-30 117
MsaG016391 MtrunA17_Chr3g0113031 37.559 213 117 7 87 286 3 212 3.18e-29 116
MsaG016391 MtrunA17_Chr7g0266701 37.349 166 92 6 19 173 1 165 4.72e-29 115
MsaG016391 MtrunA17_Chr7g0243371 51.351 74 34 1 77 148 17 90 1.48e-20 87.0
MsaG016391 MtrunA17_Chr4g0050701 30.864 162 94 4 22 175 11 162 8.32e-19 84.3
MsaG016391 MtrunA17_Chr7g0251651 34.058 138 81 4 11 147 13 141 7.86e-16 75.9
MsaG016391 MtrunA17_Chr3g0130321 33.333 165 84 7 22 171 7 160 5.08e-14 71.2
MsaG016391 MtrunA17_Chr7g0251661 32.283 127 82 3 22 147 10 133 2.12e-12 65.1
MsaG016391 MtrunA17_Chr2g0282871 29.814 161 92 6 10 153 41 197 1.38e-11 65.5
MsaG016391 MtrunA17_Chr4g0040541 28.395 162 88 6 7 147 33 187 3.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016391 AT4G35580.2 65.049 206 68 1 14 219 1 202 6.77e-92 290
MsaG016391 AT4G35580.3 65.049 206 68 1 14 219 1 202 7.74e-92 290
MsaG016391 AT4G35580.1 65.049 206 68 1 14 219 1 202 8.21e-92 289
MsaG016391 AT1G33060.2 62.981 208 76 1 7 213 9 216 1.33e-89 287
MsaG016391 AT1G33060.1 65.000 200 69 1 7 205 9 208 1.39e-89 287
MsaG016391 AT5G24590.2 55.274 237 89 4 10 230 1 236 6.02e-85 269
MsaG016391 AT3G49530.2 52.453 265 103 6 14 273 5 251 2.73e-84 266
MsaG016391 AT3G49530.1 52.453 265 103 6 14 273 5 251 6.94e-84 267
MsaG016391 AT3G17730.1 60.131 153 61 0 21 173 5 157 1.46e-61 202
MsaG016391 AT1G65910.1 47.083 240 112 4 21 249 5 240 5.67e-60 208
MsaG016391 AT5G17260.1 61.438 153 58 1 21 172 5 157 1.25e-57 198
MsaG016391 AT3G03200.1 61.438 153 58 1 21 172 5 157 9.96e-57 196
MsaG016391 AT4G17980.1 42.169 249 118 6 20 244 4 250 2.00e-55 186
MsaG016391 AT3G10480.2 53.892 167 77 0 8 174 13 179 2.47e-55 191
MsaG016391 AT4G17980.2 41.667 252 121 6 17 244 1 250 3.06e-55 187
MsaG016391 AT3G10490.1 56.774 155 66 1 21 174 26 180 3.37e-55 185
MsaG016391 AT3G10480.1 54.706 170 72 2 8 174 13 180 3.79e-55 191
MsaG016391 AT3G10490.2 56.774 155 66 1 21 174 26 180 5.27e-54 188
MsaG016391 AT5G46590.1 56.688 157 62 3 22 174 6 160 2.09e-53 182
MsaG016391 AT3G10500.1 54.375 160 73 0 14 173 1 160 2.62e-53 189
MsaG016391 AT1G54330.1 57.516 153 62 1 21 173 5 154 3.90e-52 179
MsaG016391 AT5G04410.1 52.500 160 76 0 14 173 1 160 5.09e-52 186
MsaG016391 AT5G07680.2 47.525 202 87 5 22 211 3 197 3.91e-51 177
MsaG016391 AT5G07680.1 47.525 202 87 5 22 211 17 211 4.01e-51 177
MsaG016391 AT5G61430.1 42.982 228 115 5 22 245 16 232 1.49e-50 176
MsaG016391 AT5G46590.2 61.719 128 48 1 22 148 6 133 1.74e-50 174
MsaG016391 AT5G39610.1 54.375 160 69 2 22 179 20 177 3.56e-50 173
MsaG016391 AT1G12260.2 51.282 156 73 3 18 172 3 156 2.22e-49 173
MsaG016391 AT1G62700.1 51.282 156 73 3 18 172 3 156 2.41e-49 174
MsaG016391 AT1G62700.2 51.282 156 73 3 18 172 3 156 2.41e-49 174
MsaG016391 AT1G12260.1 51.282 156 73 3 18 172 3 156 4.79e-49 173
MsaG016391 AT5G62380.2 48.485 165 82 2 18 181 3 165 6.73e-49 172
MsaG016391 AT5G62380.1 48.485 165 82 2 18 181 3 165 6.73e-49 172
MsaG016391 AT4G10350.1 49.383 162 81 1 14 174 1 162 1.03e-48 171
MsaG016391 AT3G10480.3 45.813 203 72 3 8 174 13 213 1.22e-48 176
MsaG016391 AT2G27300.1 50.633 158 70 3 17 174 9 158 1.48e-48 171
MsaG016391 AT1G32510.1 50.303 165 74 2 22 178 6 170 8.59e-48 167
MsaG016391 AT2G18060.3 51.634 153 71 2 21 172 8 158 9.09e-48 169
MsaG016391 AT2G18060.1 51.634 153 71 2 21 172 8 158 9.09e-48 169
MsaG016391 AT3G29035.1 56.291 151 62 3 22 170 24 172 1.05e-47 167
MsaG016391 AT1G33280.1 51.266 158 73 2 18 174 4 158 1.24e-47 167
MsaG016391 AT3G18400.1 53.289 152 66 3 22 172 5 152 1.26e-47 167
MsaG016391 AT3G04060.1 48.588 177 76 4 22 190 20 189 1.58e-47 168
MsaG016391 AT4G36160.1 42.857 196 105 3 21 215 9 198 1.68e-47 169
MsaG016391 AT4G36160.3 42.857 196 105 3 21 215 9 198 1.68e-47 169
MsaG016391 AT4G36160.2 42.857 196 105 3 21 215 13 202 1.98e-47 169
MsaG016391 AT3G44290.2 52.318 151 63 3 25 175 17 158 3.21e-47 164
MsaG016391 AT2G24430.2 53.165 158 69 3 21 176 15 169 3.26e-47 166
MsaG016391 AT2G24430.1 53.165 158 69 3 21 176 15 169 3.26e-47 166
MsaG016391 AT5G22290.1 48.780 164 76 3 12 175 11 166 4.28e-47 167
MsaG016391 AT5G18270.2 52.795 161 71 3 19 176 18 176 1.13e-46 166
MsaG016391 AT5G18270.1 52.795 161 71 3 19 176 18 176 1.79e-46 165
MsaG016391 AT3G44290.1 52.318 151 63 3 25 175 17 158 1.94e-46 165
MsaG016391 AT5G09330.5 40.081 247 135 6 25 267 9 246 3.50e-46 168
MsaG016391 AT5G09330.2 40.081 247 135 6 25 267 9 246 3.50e-46 168
MsaG016391 AT5G09330.4 40.081 247 135 6 25 267 9 246 3.50e-46 168
MsaG016391 AT5G09330.3 40.081 247 135 6 25 267 9 246 3.50e-46 168
MsaG016391 AT5G09330.1 40.081 247 135 6 25 267 9 246 3.50e-46 168
MsaG016391 AT4G27410.2 49.375 160 79 1 17 176 9 166 4.93e-46 162
MsaG016391 AT1G69490.1 48.521 169 77 3 14 176 1 165 8.22e-46 161
MsaG016391 AT5G66300.1 49.351 154 76 2 21 173 11 163 8.40e-46 162
MsaG016391 AT5G64060.1 47.134 157 83 0 17 173 1 157 3.66e-45 162
MsaG016391 AT3G15170.1 50.932 161 63 4 22 173 20 173 9.51e-45 159
MsaG016391 AT1G56010.2 47.191 178 86 5 22 193 19 194 9.90e-45 160
MsaG016391 AT1G71930.2 49.673 153 74 2 21 172 8 158 1.06e-44 160
MsaG016391 AT1G71930.1 49.673 153 74 2 21 172 8 158 1.06e-44 160
MsaG016391 AT3G12977.1 49.375 160 76 4 22 179 18 174 1.17e-44 158
MsaG016391 AT1G76420.1 49.383 162 77 3 21 180 21 179 1.95e-44 159
MsaG016391 AT5G08790.1 43.689 206 96 5 22 220 7 199 2.14e-44 158
MsaG016391 AT1G34190.1 53.020 149 70 0 25 173 19 167 2.24e-44 164
MsaG016391 AT1G34180.3 51.678 149 72 0 25 173 19 167 3.19e-44 162
MsaG016391 AT2G02450.2 50.336 149 69 3 25 172 54 198 5.07e-44 160
MsaG016391 AT2G02450.1 50.336 149 69 3 25 172 54 198 5.47e-44 159
MsaG016391 AT3G04070.2 46.067 178 82 5 20 185 8 183 1.06e-43 157
MsaG016391 AT3G15500.1 49.359 156 77 1 17 172 9 162 1.25e-43 157
MsaG016391 AT2G33480.1 50.993 151 69 1 22 172 15 160 1.44e-43 155
MsaG016391 AT1G34180.1 51.678 149 72 0 25 173 19 167 1.70e-43 162
MsaG016391 AT1G52890.1 49.359 156 77 1 17 172 9 162 1.73e-43 156
MsaG016391 AT5G53950.1 34.810 316 180 9 22 324 17 319 1.98e-43 158
MsaG016391 AT1G26870.1 44.785 163 77 3 25 176 19 179 2.70e-43 159
MsaG016391 AT4G27410.3 45.143 175 81 1 17 176 9 183 2.93e-43 155
MsaG016391 AT2G46770.1 40.394 203 98 4 14 193 8 210 4.84e-43 156
MsaG016391 AT1G01720.1 48.447 161 72 4 19 173 4 159 5.60e-43 154
MsaG016391 AT5G13180.1 46.199 171 79 4 4 172 1 160 1.50e-42 152
MsaG016391 AT2G33480.2 50.993 151 67 2 22 172 15 158 2.50e-42 152
MsaG016391 AT1G32770.1 38.298 235 110 7 12 226 3 222 2.57e-42 154
MsaG016391 AT5G63790.1 50.314 159 67 5 21 172 49 202 2.64e-42 153
MsaG016391 AT5G63790.2 50.314 159 67 5 21 172 59 212 2.97e-42 153
MsaG016391 AT5G39820.1 43.931 173 72 5 25 174 23 193 5.00e-42 153
MsaG016391 AT1G77450.1 48.077 156 71 4 22 172 10 160 1.51e-41 149
MsaG016391 AT2G43000.1 47.097 155 78 3 20 172 15 167 1.59e-41 150
MsaG016391 AT1G61110.1 48.485 165 70 4 22 173 16 178 4.49e-41 150
MsaG016391 AT3G04070.1 42.268 194 82 5 20 185 8 199 4.60e-41 151
MsaG016391 AT1G34180.4 47.826 161 72 1 25 173 19 179 5.50e-41 153
MsaG016391 AT3G15510.1 44.379 169 79 3 26 181 21 187 8.99e-41 150
MsaG016391 AT1G79580.3 47.134 157 78 3 21 175 16 169 1.02e-40 150
MsaG016391 AT1G79580.5 47.134 157 78 3 21 175 16 169 1.02e-40 150
MsaG016391 AT1G79580.4 47.134 157 78 3 21 175 16 169 1.02e-40 150
MsaG016391 AT1G79580.2 47.134 157 78 3 21 175 16 169 1.02e-40 150
MsaG016391 AT1G79580.1 47.134 157 78 3 21 175 16 169 1.02e-40 150
MsaG016391 AT3G61910.1 42.135 178 83 3 14 174 3 177 2.31e-40 148
MsaG016391 AT1G34180.2 47.826 161 72 1 25 173 19 179 2.93e-40 153
MsaG016391 AT2G17040.1 46.358 151 71 3 25 172 9 152 2.80e-38 141
MsaG016391 AT4G28530.1 37.387 222 115 4 22 225 10 225 1.07e-37 142
MsaG016391 AT5G04395.1 47.183 142 61 2 20 147 26 167 6.54e-37 135
MsaG016391 AT1G32870.2 50.000 154 73 2 22 173 10 161 6.80e-37 143
MsaG016391 AT1G32870.1 50.000 154 73 2 22 173 10 161 7.17e-37 143
MsaG016391 AT1G32870.3 50.000 154 73 2 22 173 46 197 1.27e-36 142
MsaG016391 AT4G01550.1 44.654 159 73 4 24 175 6 156 2.68e-35 137
MsaG016391 AT5G61430.2 42.197 173 87 4 77 245 6 169 4.57e-35 132
MsaG016391 AT3G12910.1 41.237 194 79 8 25 190 24 210 1.71e-34 132
MsaG016391 AT1G52880.1 44.785 163 76 4 26 176 21 181 3.63e-34 131
MsaG016391 AT3G12977.2 51.376 109 52 1 72 179 13 121 1.07e-32 124
MsaG016391 AT1G02230.1 39.773 176 90 8 23 190 4 171 1.43e-31 125
MsaG016391 AT4G01520.1 39.759 166 83 6 23 180 5 161 4.06e-31 122
MsaG016391 AT4G10350.2 53.125 96 45 0 79 174 20 115 2.02e-30 120
MsaG016391 AT4G01540.4 38.788 165 84 6 24 180 6 161 1.53e-29 120
MsaG016391 AT4G01540.3 38.788 165 84 6 24 180 6 161 1.56e-29 120
MsaG016391 AT5G22380.1 37.975 158 91 4 20 170 3 160 2.22e-29 115
MsaG016391 AT1G56010.1 48.062 129 60 4 70 193 1 127 2.74e-29 116
MsaG016391 AT4G01540.2 38.788 165 84 6 24 180 6 161 2.92e-29 119
MsaG016391 AT4G01540.1 38.788 165 84 6 24 180 6 161 3.72e-29 120
MsaG016391 AT3G44350.2 38.750 160 93 4 22 176 5 164 1.06e-28 114
MsaG016391 AT3G04420.2 37.688 199 104 7 23 209 4 194 4.56e-28 114
MsaG016391 AT1G02250.1 37.714 175 94 7 23 190 4 170 7.55e-28 114
MsaG016391 AT3G04420.1 37.688 199 104 7 23 209 4 194 8.08e-28 114
MsaG016391 AT3G44350.1 41.985 131 72 3 22 148 5 135 3.25e-27 107
MsaG016391 AT2G33480.3 51.042 96 47 0 77 172 8 103 3.78e-27 108
MsaG016391 AT3G10490.4 65.000 80 27 1 96 174 1 80 5.58e-27 112
MsaG016391 AT3G10490.3 65.000 80 27 1 96 174 1 80 5.58e-27 112
MsaG016391 AT1G01010.1 36.810 163 86 4 24 176 5 160 6.44e-25 107
MsaG016391 AT1G02220.1 37.748 151 82 4 23 170 4 145 1.90e-22 99.8
MsaG016391 AT4G28530.2 45.872 109 41 2 22 114 10 116 5.34e-21 94.0
MsaG016391 AT2G18060.2 54.286 70 30 1 103 172 3 70 1.49e-19 89.4
MsaG016391 AT2G43000.2 44.318 88 48 1 86 172 2 89 5.31e-18 82.8
MsaG016391 AT5G22290.2 53.425 73 27 2 103 175 2 67 1.82e-17 82.4
MsaG016391 AT5G64530.1 28.877 187 97 6 21 185 2 174 4.70e-17 79.7
MsaG016391 AT5G64530.2 34.375 128 68 4 22 147 3 116 1.73e-16 77.4
MsaG016391 AT5G14000.2 32.812 128 80 2 22 147 15 138 9.98e-16 75.1
MsaG016391 AT5G14000.1 31.429 140 90 2 10 147 3 138 2.63e-14 72.4
MsaG016391 AT3G56530.1 27.632 152 105 3 21 170 51 199 2.69e-14 74.3
MsaG016391 AT3G04430.1 35.294 136 74 5 28 151 6 139 2.79e-14 72.0
MsaG016391 AT3G55210.1 28.834 163 96 6 22 170 11 167 2.02e-13 71.2
MsaG016391 AT4G28500.1 31.579 152 80 7 15 147 52 198 1.40e-11 65.9
MsaG016391 AT5G50820.1 31.298 131 76 4 22 148 17 137 1.89e-11 63.5
MsaG016391 AT1G25580.1 25.112 223 141 7 6 215 42 251 4.19e-11 65.5
MsaG016391 AT1G28470.1 30.667 150 83 7 15 147 70 215 7.19e-11 63.9

Find 143 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTCATAATTGTATTAT+AGG 0.165272 3:+97458078 None:intergenic
GAGAGATTGATGTCTGTAAA+TGG 0.244895 3:-97460691 MsaT016391.1:CDS
CCATCGGATGTTAATAATAC+TGG 0.246728 3:-97458142 MsaT016391.1:CDS
CCAAAGGGAAGAGGACTAAT+TGG 0.267361 3:-97459655 MsaT016391.1:CDS
TATTTCTTCTGGAGAGTAAT+TGG 0.285534 3:+97459367 None:intergenic
CTAACAATAGATCATCTTTC+GGG 0.285939 3:+97458731 None:intergenic
GGATCAGATTGTATTTCTTC+TGG 0.288766 3:+97459356 None:intergenic
CCAATTAGTCCTCTTCCCTT+TGG 0.296425 3:+97459655 None:intergenic
CAATTAGTCCTCTTCCCTTT+GGG 0.307407 3:+97459656 None:intergenic
ATGGAAATGGTGACGAGGTT+TGG 0.308267 3:-97460721 MsaT016391.1:CDS
AATGTTAAGGACAGTGGTTC+AGG 0.328510 3:-97458509 MsaT016391.1:CDS
CGAGGTTACAGCATTAGATA+TGG 0.348081 3:+97459253 None:intergenic
TGGAAATGGTGACGAGGTTT+GGG 0.354029 3:-97460720 MsaT016391.1:CDS
CTTCCCCATGTTAAATGTTA+AGG 0.357270 3:-97458522 MsaT016391.1:CDS
GCAAACTACTTCAGCTCCTT+TGG 0.357575 3:-97459393 MsaT016391.1:CDS
TCTAACAATAGATCATCTTT+CGG 0.362215 3:+97458730 None:intergenic
CAGATTATTCTCCCCACCTT+TGG 0.375953 3:-97458704 MsaT016391.1:CDS
CATGGATACTGGAAGGCAAC+AGG 0.381571 3:-97459755 MsaT016391.1:CDS
GCAGTTACTTACAGTCATAT+TGG 0.382336 3:+97458463 None:intergenic
AAGGATCGTAAAATCAAATC+TGG 0.393585 3:-97459731 MsaT016391.1:CDS
CTGTTCAATCGATGTCCGTT+TGG 0.395786 3:+97459788 None:intergenic
TTTCTTACCACAGCAATAAT+CGG 0.399051 3:+97457885 None:intergenic
ATGGTTTCCTCAGAGATATC+AGG 0.402055 3:+97459272 None:intergenic
GAGCAACAAATCATGGATAC+TGG 0.402836 3:-97459766 MsaT016391.1:CDS
AGAAAAGAATTTACCTGTCC+CGG 0.402976 3:+97459584 None:intergenic
AAATCTGGAACCATCTTGAT+TGG 0.406417 3:-97459716 MsaT016391.1:CDS
ATATTTCCTGCAGGAGGATC+AGG 0.408393 3:-97458779 MsaT016391.1:intron
TCTTTGAATTCGCTTCCGTT+AGG 0.413347 3:-97460803 MsaT016391.1:CDS
ACATTTAACATGGGGAAGTT+CGG 0.413654 3:+97458527 None:intergenic
CTTTGAATTCGCTTCCGTTA+GGG 0.416452 3:-97460802 MsaT016391.1:CDS
TGTGATGTGGATACTGTAAT+AGG 0.423403 3:+97459329 None:intergenic
CCCACCCTCAAGGAGCTTGA+TGG 0.429254 3:-97459614 MsaT016391.1:CDS
TTCTCTTGATTGTGTTCCAT+CGG 0.437033 3:-97460849 MsaT016391.1:CDS
AACGACGGTGTTGTCGCAAA+AGG 0.438910 3:+97458244 None:intergenic
AATAATCGACAGAGGACATA+TGG 0.439649 3:+97459464 None:intergenic
TGTCTCATGTGGGATGGTTA+AGG 0.445720 3:-97457949 MsaT016391.1:CDS
CGTTCGAAGATCAATGGAAA+TGG 0.451849 3:-97460734 MsaT016391.1:CDS
TACTTACGTTCGAAGATCAA+TGG 0.455738 3:-97460740 MsaT016391.1:CDS
ATAATTGTATTATAGGTCCT+TGG 0.455759 3:+97458085 None:intergenic
GTGGTTCTTCTTCTGTCCTC+AGG 0.458036 3:-97459822 MsaT016391.1:CDS
GTACTGCTCAAAGGAGAATT+CGG 0.460146 3:-97457989 MsaT016391.1:CDS
CATCCGATGGAAAAGCCGTC+TGG 0.463423 3:+97458155 None:intergenic
TTGAACAGAGCAACAAATCA+TGG 0.463690 3:-97459773 MsaT016391.1:CDS
CTTCTTCATTCCAATCAAGA+TGG 0.465917 3:+97459706 None:intergenic
GGTACCATCAAGCTCCTTGA+GGG 0.487153 3:+97459610 None:intergenic
TGTGTTCCATCGGTCGATGA+TGG 0.492641 3:-97460839 MsaT016391.1:CDS
AGAGATTGATGTCTGTAAAT+GGG 0.493465 3:-97460690 MsaT016391.1:CDS
ACAATTATGAGCAGTGAAAG+TGG 0.495068 3:-97458070 MsaT016391.1:CDS
CAAAGGGAAGAGGACTAATT+GGG 0.501722 3:-97459654 MsaT016391.1:CDS
TGGTTGCTCATATCCATTGA+CGG 0.503137 3:+97458105 None:intergenic
TTCAGGAAGCAACTCGGATG+TGG 0.505403 3:-97458492 MsaT016391.1:CDS
GTGACTAACGGACACCTCAC+AGG 0.510714 3:+97458553 None:intergenic
AAAGCTGGAAAATCATGCTT+CGG 0.514183 3:-97457784 MsaT016391.1:CDS
AGAAGAAATACAATCTGATC+CGG 0.517670 3:-97459354 MsaT016391.1:CDS
TGATGGTACCAACCCGGGAC+AGG 0.525518 3:-97459597 MsaT016391.1:intron
CTTTGAGCAGTACCTTGCAT+CGG 0.525564 3:+97457999 None:intergenic
TTAACATGGGGAAGTTCGGC+TGG 0.526190 3:+97458531 None:intergenic
CATATCTAATGCTGTAACCT+CGG 0.526983 3:-97459252 MsaT016391.1:CDS
GAAGTGTACAATGCCGTCAA+TGG 0.528860 3:-97458118 MsaT016391.1:CDS
TGGGAACCCTGGGACATGCC+TGG 0.531073 3:-97460671 MsaT016391.1:intron
GTGTTCCATCGGTCGATGAT+GGG 0.532265 3:-97460838 MsaT016391.1:CDS
GAAAAGAATTTACCTGTCCC+GGG 0.534071 3:+97459585 None:intergenic
TACAGTGGTCGTGCACCCAA+AGG 0.535914 3:-97459671 MsaT016391.1:CDS
TTCAAAACCGATTATTGCTG+TGG 0.538149 3:-97457892 MsaT016391.1:intron
TCGATAAGTTCCTCGTCAGT+AGG 0.541389 3:+97460767 None:intergenic
TCGTTTAACAATTAATCAGA+TGG 0.543825 3:-97458656 MsaT016391.1:intron
TGGTACCATCAAGCTCCTTG+AGG 0.544119 3:+97459609 None:intergenic
CACGGAAGAGGATAAGCAGC+TGG 0.545379 3:-97459303 MsaT016391.1:CDS
ACAGTGGTCGTGCACCCAAA+GGG 0.554173 3:-97459670 MsaT016391.1:CDS
CCAGTATTATTAACATCCGA+TGG 0.557242 3:+97458142 None:intergenic
GTCGTGCACCCAAAGGGAAG+AGG 0.558317 3:-97459664 MsaT016391.1:CDS
CACATCACAGGTCACGGAAG+AGG 0.559271 3:-97459315 MsaT016391.1:CDS
CTGTCCTTAACATTTAACAT+GGG 0.559386 3:+97458518 None:intergenic
GTGAAAGTGGAATTGTAAGG+AGG 0.560136 3:-97458057 MsaT016391.1:CDS
GTGGATACTGTAATAGGAGC+CGG 0.562139 3:+97459335 None:intergenic
GCAGTGAAAGTGGAATTGTA+AGG 0.564087 3:-97458060 MsaT016391.1:CDS
CTCTTCCGTGACCTGTGATG+TGG 0.566229 3:+97459316 None:intergenic
AGTGGTACGAAACAAGGATC+CGG 0.568363 3:-97459846 MsaT016391.1:CDS
ACCATCAAGCTCCTTGAGGG+TGG 0.568524 3:+97459613 None:intergenic
AAACGATAGTGAAATTCTTG+TGG 0.570283 3:+97458673 None:intergenic
GTGGCATATGCACCAAAGGT+GGG 0.571599 3:+97458692 None:intergenic
TTTGTCAGTGGTACGAAACA+AGG 0.573682 3:-97459852 MsaT016391.1:CDS
CGATGCAAGGTACTGCTCAA+AGG 0.575026 3:-97457998 MsaT016391.1:CDS
AAGATTGAACATGTCTCATG+TGG 0.575379 3:-97457960 MsaT016391.1:CDS
ACTGTCCTTAACATTTAACA+TGG 0.576387 3:+97458517 None:intergenic
AATTGCAAAACTAGCTGCAG+AGG 0.578693 3:-97459183 MsaT016391.1:intron
CAGGATCGCAAGTATCCAAA+CGG 0.580718 3:-97459803 MsaT016391.1:CDS
ATTTACAGACATCAATCTCT+CGG 0.583234 3:+97460693 None:intergenic
GAGCATCATATCCATCGCTA+TGG 0.583583 3:+97459222 None:intergenic
TCCATCGGTCGATGATGGGA+TGG 0.586571 3:-97460834 MsaT016391.1:CDS
TGAGTATCGTCCCACCCTCA+AGG 0.587441 3:-97459624 MsaT016391.1:CDS
AGAATTTACCTGTCCCGGGT+TGG 0.588022 3:+97459589 None:intergenic
ATCATCACCACTGTAATCAA+AGG 0.589896 3:+97458213 None:intergenic
TGGTTTCCTCAGAGATATCA+GGG 0.590219 3:+97459273 None:intergenic
TAAGTTCCTCGTCAGTAGGT+CGG 0.593408 3:+97460771 None:intergenic
GAGCTTGATGGTACCAACCC+GGG 0.595115 3:-97459602 MsaT016391.1:CDS
AGTTTCAAACTGTGGTGAAG+TGG 0.597493 3:-97459417 MsaT016391.1:CDS
ATGTCTGTAAATGGGAACCC+TGG 0.597611 3:-97460682 MsaT016391.1:CDS
ATTACAAAACAATTTCCAGA+CGG 0.599672 3:-97458170 MsaT016391.1:CDS
GGAGAGTAATTGGCAGCCAA+AGG 0.600092 3:+97459377 None:intergenic
TCGGTTGATTACCATAGCGA+TGG 0.603183 3:-97459233 MsaT016391.1:CDS
GAAGTTCGGCTGGTGACTAA+CGG 0.603490 3:+97458541 None:intergenic
TTTGGATACTTGCGATCCTG+AGG 0.603602 3:+97459806 None:intergenic
ATGTTAAATGTTAAGGACAG+TGG 0.603691 3:-97458515 MsaT016391.1:CDS
TATTACAGTATCCACATCAC+AGG 0.607630 3:-97459327 MsaT016391.1:CDS
CCATCAAGCTCCTTGAGGGT+GGG 0.612423 3:+97459614 None:intergenic
TGTGGCATATGCACCAAAGG+TGG 0.615705 3:+97458691 None:intergenic
TTTAAATTATGATCTTAACT+GGG 0.616370 3:-97458585 MsaT016391.1:CDS
GGTCGGAATCGAAACCCTAA+CGG 0.616800 3:+97460788 None:intergenic
AACAAATCATGGATACTGGA+AGG 0.619020 3:-97459762 MsaT016391.1:CDS
TCTTGTGGCATATGCACCAA+AGG 0.619439 3:+97458688 None:intergenic
CAGTGGTTCAGGAAGCAACT+CGG 0.619958 3:-97458498 MsaT016391.1:CDS
TGAAAGTGGAATTGTAAGGA+GGG 0.623090 3:-97458056 MsaT016391.1:intron
AGCCACACCTTTGATTACAG+TGG 0.625963 3:-97458220 MsaT016391.1:CDS
GCCATCCCATCATCGACCGA+TGG 0.629071 3:+97460833 None:intergenic
CACCACTGTAATCAAAGGTG+TGG 0.629668 3:+97458218 None:intergenic
CTCACGAGGCAATTGACAGA+AGG 0.630848 3:-97458270 MsaT016391.1:CDS
TTTAAGACAAATCCGATGCA+AGG 0.634026 3:-97458011 MsaT016391.1:intron
AAAATACCAGGCATGTCCCA+GGG 0.634126 3:+97460665 None:intergenic
GTTTGTTGTAGATTTGTCAG+TGG 0.637707 3:-97459864 MsaT016391.1:intron
ATGGATACTGGAAGGCAACA+GGG 0.638784 3:-97459754 MsaT016391.1:CDS
CTTCTGTCAATTGCCTCGTG+AGG 0.643214 3:+97458271 None:intergenic
GGAGCTTGATGGTACCAACC+CGG 0.644442 3:-97459603 MsaT016391.1:CDS
AGTATCCACATCACAGGTCA+CGG 0.646407 3:-97459321 MsaT016391.1:CDS
TGACTAACGGACACCTCACA+GGG 0.648297 3:+97458554 None:intergenic
TGTCCTTAACATTTAACATG+GGG 0.648596 3:+97458519 None:intergenic
TGTCTGTAAATGGGAACCCT+GGG 0.651893 3:-97460681 MsaT016391.1:CDS
ATACTGGAAGGCAACAGGGA+AGG 0.655689 3:-97459750 MsaT016391.1:CDS
TGGCATATGCACCAAAGGTG+GGG 0.660078 3:+97458693 None:intergenic
TCAATGGATATGAGCAACCA+AGG 0.669058 3:-97458102 MsaT016391.1:CDS
ATCGGTCGATGATGGGATGG+CGG 0.670540 3:-97460831 MsaT016391.1:CDS
TGAACATGTCTCATGTGGGA+TGG 0.675641 3:-97457955 MsaT016391.1:CDS
GCAAGCTGCTTATCCTCACG+AGG 0.677048 3:-97458284 MsaT016391.1:CDS
AGCATTGAAGTTTCAAACTG+TGG 0.683843 3:-97459425 MsaT016391.1:CDS
TCAAAGGTGTGGCTAAACGA+CGG 0.685567 3:+97458229 None:intergenic
GGACAGAAGAAGAACCACTC+CGG 0.686334 3:+97459827 None:intergenic
CTGGGATCAAATTCCCTGTG+AGG 0.690111 3:-97458567 MsaT016391.1:CDS
TCGATTCCGACCTACTGACG+AGG 0.696170 3:-97460777 MsaT016391.1:CDS
TGTTATCCCTGATATCTCTG+AGG 0.698772 3:-97459279 MsaT016391.1:CDS
ATCGCTATGGTAATCAACCG+AGG 0.702461 3:+97459235 None:intergenic
AGATTGAACATGTCTCATGT+GGG 0.719131 3:-97457959 MsaT016391.1:CDS
GATCAATGGAAATGGTGACG+AGG 0.722632 3:-97460726 MsaT016391.1:CDS
TACGAAACAAGGATCCGGAG+TGG 0.730421 3:-97459841 MsaT016391.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 97457780 97460876 97457780 ID=MsaG016391
Chr3 mRNA 97457780 97460876 97457780 ID=MsaT016391.1;Parent=MsaG016391
Chr3 exon 97457780 97457812 97457780 ID=MsaT016391.1.exon8;Parent=MsaT016391.1
Chr3 CDS 97457780 97457812 97457780 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97457893 97458027 97457893 ID=MsaT016391.1.exon7;Parent=MsaT016391.1
Chr3 CDS 97457893 97458027 97457893 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97458057 97458311 97458057 ID=MsaT016391.1.exon6;Parent=MsaT016391.1
Chr3 CDS 97458057 97458311 97458057 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97458475 97458624 97458475 ID=MsaT016391.1.exon5;Parent=MsaT016391.1
Chr3 CDS 97458475 97458624 97458475 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97458657 97458788 97458657 ID=MsaT016391.1.exon4;Parent=MsaT016391.1
Chr3 CDS 97458657 97458788 97458657 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97459184 97459489 97459184 ID=MsaT016391.1.exon3;Parent=MsaT016391.1
Chr3 CDS 97459184 97459489 97459184 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97459598 97459875 97459598 ID=MsaT016391.1.exon2;Parent=MsaT016391.1
Chr3 CDS 97459598 97459875 97459598 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Chr3 exon 97460672 97460876 97460672 ID=MsaT016391.1.exon1;Parent=MsaT016391.1
Chr3 CDS 97460672 97460876 97460672 ID=cds.MsaT016391.1;Parent=MsaT016391.1
Gene Sequence

>MsaT016391.1

ATGGGTTCTCTTGATTGTGTTCCATCGGTCGATGATGGGATGGCGGTGTTGTCTTTGAATTCGCTTCCGTTAGGGTTTCGATTCCGACCTACTGACGAGGAACTTATCGATTACTACTTACGTTCGAAGATCAATGGAAATGGTGACGAGGTTTGGGTTATCCGAGAGATTGATGTCTGTAAATGGGAACCCTGGGACATGCCTGATTTGTCAGTGGTACGAAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCTCAGGATCGCAAGTATCCAAACGGACATCGATTGAACAGAGCAACAAATCATGGATACTGGAAGGCAACAGGGAAGGATCGTAAAATCAAATCTGGAACCATCTTGATTGGAATGAAGAAGACTTTAGTTTTCTACAGTGGTCGTGCACCCAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATCGTCCCACCCTCAAGGAGCTTGATGGTACCAACCCGGGACAGAATCCATATGTCCTCTGTCGATTATTTAAGAAAAACGATGAGAGCATTGAAGTTTCAAACTGTGGTGAAGTGGAGCAAACTACTTCAGCTCCTTTGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATCCGGCTCCTATTACAGTATCCACATCACAGGTCACGGAAGAGGATAAGCAGCTGGCTGTTATCCCTGATATCTCTGAGGAAACCATATCTAATGCTGTAACCTCGGTTGATTACCATAGCGATGGATATGATGCTCATGATGTCCAAAATCAAATTGCAAAACTAGCTGCAGAGGAGGATCAGGCGTTGAACTTTGACATGTATTATAACCCGAAAGATGATCTATTGTTAGATGACAGATTATTCTCCCCACCTTTGGTGCATATGCCACAAGAATTTCACTATCGTTTAACAATTAATCAGATGATAAATATTTCAGACTTTTTAAATTATGATCTTAACTGGGATCAAATTCCCTGTGAGGTGTCCGTTAGTCACCAGCCGAACTTCCCCATGTTAAATGTTAAGGACAGTGGTTCAGGAAGCAACTCGGATGTGGAAGTAGCCAATATGACTGGTATGCAAGCTGCTTATCCTCACGAGGCAATTGACAGAAGGATTCCTTTTGCGACAACACCGTCGTTTAGCCACACCTTTGATTACAGTGGTGATGATCAAAAGAGCAATGTTGTTTTATTACAAAACAATTTCCAGACGGCTTTTCCATCGGATGTTAATAATACTGGTGAAGTGTACAATGCCGTCAATGGATATGAGCAACCAAGGACCTATAATACAATTATGAGCAGTGAAAGTGGAATTGTAAGGAGGACAAATCCGATGCAAGGTACTGCTCAAAGGAGAATTCGGTTGTCAAAGATTGAACATGTCTCATGTGGGATGGTTAAGGTTAAAGATGAGAGTTGTACACAAGAACAACATAATTCAAAACCGATTATTGCTGTGGAGAAGAAAGCTGGAAAATCATGCTTCGGATGA
Protein sequence

>MsaT016391.1

MGSLDCVPSVDDGMAVLSLNSLPLGFRFRPTDEELIDYYLRSKINGNGDEVWVIREIDVCKWEPWDMPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGTILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDESIEVSNCGEVEQTTSAPLAANYSPEEIQSDPAPITVSTSQVTEEDKQLAVIPDISEETISNAVTSVDYHSDGYDAHDVQNQIAKLAAEEDQALNFDMYYNPKDDLLLDDRLFSPPLVHMPQEFHYRLTINQMINISDFLNYDLNWDQIPCEVSVSHQPNFPMLNVKDSGSGSNSDVEVANMTGMQAAYPHEAIDRRIPFATTPSFSHTFDYSGDDQKSNVVLLQNNFQTAFPSDVNNTGEVYNAVNGYEQPRTYNTIMSSESGIVRRTNPMQGTAQRRIRLSKIEHVSCGMVKVKDESCTQEQHNSKPIIAVEKKAGKSCFG*