AlfalfaGEDB | MsaG016412

M. sativa ssp. caerulea / MsaG016412

KEGG: -
GO: -
PFAM: PF00515.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016412	XP_024635313.1	97.044	778	22	1	1	777	1	778	0.0	1558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016412	sp\|Q8BTK5\|SMYD4_MOUSE	26.619	278	159	4	461	735	510	745	8.53e-18	92.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016412	G7J9Q5	97.044	778	22	1	1	777	1	778	0.0	1558

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TFs/TRs:

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Gene ID	Type	Classification
MsaG016412	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000110	MsaG016412	0.800147	2.760944e-48	3.745264e-46
MsaG001286	MsaG016412	0.808247	5.791451e-50	9.481065e-48
MsaG001367	MsaG016412	0.816958	7.349515e-52	1.493395e-49
MsaG001726	MsaG016412	0.806210	1.556680e-49	2.427941e-47
MsaG004077	MsaG016412	0.836587	1.568834e-56	5.511294e-54
MsaG005632	MsaG016412	0.808040	6.405113e-50	1.043362e-47
MsaG010372	MsaG016412	0.813238	4.878458e-51	9.022302e-49
MsaG010860	MsaG016412	0.805740	1.952348e-49	3.011336e-47
MsaG014493	MsaG016412	0.810869	1.593113e-50	2.778807e-48
MsaG015382	MsaG016412	0.811055	1.452920e-50	2.545875e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016412	MtrunA17_Chr3g0128421	97.044	778	22	1	1	777	1	778	0.0	1558
MsaG016412	MtrunA17_Chr3g0115061	22.118	321	189	10	459	766	182	454	3.11e-11	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG016412	AT1G33400.1	44.823	792	417	7	1	776	1	788	682
MsaG016412	AT1G33400.2	44.667	750	395	7	43	776	55	800	662
MsaG016412	AT1G33400.3	44.160	625	329	7	168	776	2	622	536

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Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACACCTTTGAATAGCT+TGG	0.472303	3:-97640400	None:intergenic
AAATGTACACTGGAATGAAA+TGG	0.446196	3:-97643694	None:intergenic
AAATTGTTCTGGCGCAGTGT+TGG	0.499251	3:+97645151	MsaT016412.1:CDS
AAATTTGCATGCATACAATA+AGG	0.339149	3:+97645864	MsaT016412.1:CDS
AACACTGCGCCAGAACAATT+TGG	0.217761	3:-97645149	None:intergenic
AAGAACGTAATTATCTTCTG+TGG	0.542033	3:-97642895	None:intergenic
AAGAAGATGGAGACTCTGAA+AGG	0.627632	3:+97639678	None:intergenic
AAGACAATATAACAATACAA+TGG	0.671651	3:-97643295	None:intergenic
AAGAGTGTCGAATCATCAAC+AGG	0.494373	3:+97640952	MsaT016412.1:CDS
AAGCCTTAATATGCATAAAA+AGG	0.306459	3:+97645562	MsaT016412.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	97639684	97648403	97639684	ID=MsaG016412
Chr3	mRNA	97639684	97648403	97639684	ID=MsaT016412.1;Parent=MsaG016412
Chr3	exon	97639684	97639812	97639684	ID=MsaT016412.1.exon1;Parent=MsaT016412.1
Chr3	CDS	97639684	97639812	97639684	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97639891	97640025	97639891	ID=MsaT016412.1.exon2;Parent=MsaT016412.1
Chr3	CDS	97639891	97640025	97639891	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97640127	97640213	97640127	ID=MsaT016412.1.exon3;Parent=MsaT016412.1
Chr3	CDS	97640127	97640213	97640127	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97640343	97640414	97640343	ID=MsaT016412.1.exon4;Parent=MsaT016412.1
Chr3	CDS	97640343	97640414	97640343	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97640877	97641081	97640877	ID=MsaT016412.1.exon5;Parent=MsaT016412.1
Chr3	CDS	97640877	97641081	97640877	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97642167	97642285	97642167	ID=MsaT016412.1.exon6;Parent=MsaT016412.1
Chr3	CDS	97642167	97642285	97642167	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97642747	97643136	97642747	ID=MsaT016412.1.exon7;Parent=MsaT016412.1
Chr3	CDS	97642747	97643136	97642747	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97643234	97643368	97643234	ID=MsaT016412.1.exon8;Parent=MsaT016412.1
Chr3	CDS	97643234	97643368	97643234	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97643595	97643735	97643595	ID=MsaT016412.1.exon9;Parent=MsaT016412.1
Chr3	CDS	97643595	97643735	97643595	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97643932	97644087	97643932	ID=MsaT016412.1.exon10;Parent=MsaT016412.1
Chr3	CDS	97643932	97644087	97643932	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97645020	97645232	97645020	ID=MsaT016412.1.exon11;Parent=MsaT016412.1
Chr3	CDS	97645020	97645232	97645020	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97645426	97645583	97645426	ID=MsaT016412.1.exon12;Parent=MsaT016412.1
Chr3	CDS	97645426	97645583	97645426	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97645783	97645897	97645783	ID=MsaT016412.1.exon13;Parent=MsaT016412.1
Chr3	CDS	97645783	97645897	97645783	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97646470	97646550	97646470	ID=MsaT016412.1.exon14;Parent=MsaT016412.1
Chr3	CDS	97646470	97646550	97646470	ID=cds.MsaT016412.1;Parent=MsaT016412.1
Chr3	exon	97648206	97648403	97648206	ID=MsaT016412.1.exon15;Parent=MsaT016412.1
Chr3	CDS	97648206	97648403	97648206	ID=cds.MsaT016412.1;Parent=MsaT016412.1

Gene Sequence

>MsaT016412.1

ATGGAGACTCTGAAAGGTGCGATTCCAGAGAAACTCAAACAAGCAATTAGGGATAGCACTGTAAACACTCTTAGCGACACATGTTCTTCTCTTCATAACTTCTTTCTTCATTTCGACCCTTTTCACCAGACTATGACTCAACTTGCAGACCCTAGCTATGCTCTGTGCGGGAAAAGCAAAGAAGCTGCTTTGAAATATAAGCAGCTTGGTAATCAATGCTTCTCTAATGCTGATTATGTCAAGGCTTTAAATTATTATACTCAGGCATTACGAAAGGCTCCTTTTGAAGTTGGTGAAATTGAAAATAATCTCATTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTCAGTAGAATGTTTGCGCGACTGTGATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATATTGCATTGGGAAATAATAGAGATGCAATCTGTGACTTAAATATAGCTAAGAGTGTCGAATCATCAACAGGAGGGAAGCGACAAATAGAATGTGAGCTGAAAATTATTTTAGACCAATCCAAGAGCACAAATATAGTAGTACAGCCGCGACAGAAGGAGAACAGCTTGAGTACTACGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCGTACCTGATAAAGGAAGAGGCATGGTGCCGCCATCTGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCATATGCTATGGTAATATTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCATTGTACTGCTCGCACCAATGCCAAATAAAGGCAGGTGGGCAAATGTTCATGATATCCACAGAAGATAATTACGTTCTTAAAAACTTACCCAACAATCTTGCTGAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAGCAAAAGATTGGTAATGTTACTGAACATAAACATGAATGTCAAGGAGTGCATTGGCCTGCTGTACTGCCTTCTGACATAGTTTTGGCTGGCAGACTTCTAGCGAAGTTTTTGTCAAAGAACTCATCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGTTATGAACATATGCCATTTGAAAGTAAATTGGATTCACATTTGTACGCCATTGTATTGTTATATTGTCTTAAACATTCTTATGGAGCTATGCTTGCCATCAATGGAATCTCTATATCACAGGTGGTCATAGTTATTTCCCAGATTAAAGTGAATTGTATGACTGTTGTTAGTTTAAAATCAATAGACGCTCATGGACTGTCAGATCAGTCTGGAGGATTTCCATTTCATTCCAGTGTACATTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGTTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCGCGCACACTCTATTTACGAACAACACAAGCTGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTACGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTAAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATCGTCCTCAATGCTTTTCATTGTGTGAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAATGTGAAAAGCAGAAAATCAAACACCTAGCTGTTGCTGATAAAGTTATCAAGAACGATGACATCTATGAAGTTTGTCTTCAATTTAACCAAAATGACGCTTCTATTCATATTCAACCTGGAGTCTGTTTGAAATGCAGTTCTTACCGTGATCTGGAGTCTTCACGTGCAACAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATACTGTCAAAAGAAATTTCAAATACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGCAGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTGGGAGAATTACAATTATCGGCGGATCATTGTAAAGCATCTATTCAGATTTTGGAGAAGATATATGATCCTGATGATATAGTTATTGCTTATGAACTTGTGAAGCTTTCATCCGTCCAACTTTACTTGGGTGACAATAGTGCTGTCAACAGCATTGGTCGAATAGGTGCTATTTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTTCCTTATCTTCAGTACCTTAGGAGAGAAATTTAG

Protein sequence

>MsaT016412.1

METLKGAIPEKLKQAIRDSTVNTLSDTCSSLHNFFLHFDPFHQTMTQLADPSYALCGKSKEAALKYKQLGNQCFSNADYVKALNYYTQALRKAPFEVGEIENNLIATLYINRATVLHKMNLSVECLRDCDRALQICPSYSKAWYRRGKANIALGNNRDAICDLNIAKSVESSTGGKRQIECELKIILDQSKSTNIVVQPRQKENSLSTTGEMPQIKLQSVSVPDKGRGMVPPSDVSPGSLVHAEEPYAMVILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQMFMISTEDNYVLKNLPNNLAEYAAEVIQYNDCEQKIGNVTEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNSSGDITSFVEKLELSHCYEHMPFESKLDSHLYAIVLLYCLKHSYGAMLAINGISISQVVIVISQIKVNCMTVVSLKSIDAHGLSDQSGGFPFHSSVHLTSNVEQVRVGKAIYKVGSLFNHSCQPNVHAYFLSRTLYLRTTQAVAAGCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLECEKQKIKHLAVADKVIKNDDIYEVCLQFNQNDASIHIQPGVCLKCSSYRDLESSRATVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKIYDPDDIVIAYELVKLSSVQLYLGDNSAVNSIGRIGAIFSRYYGLHADLVFPYLQYLRREI*