AlfalfaGEDB | MsaG016416

M. sativa ssp. caerulea / MsaG016416

KEGG: -
GO: -
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016416	XP_003602454.1	91.829	257	16	3	1	254	1	255	8.10e-163	461

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016416	G7J9R3	91.829	257	16	3	1	254	1	255	3.87e-163	461

TFs/TRs:

Gene ID	Type	Classification
MsaG016416	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG016416	0.807193	9.674394e-50	1.544236e-47
MsaG000161	MsaG016416	0.881431	5.124702e-70	9.888157e-67
MsaG000315	MsaG016416	0.824092	1.722380e-53	4.226696e-51
MsaG000566	MsaG016416	0.816358	1.000188e-51	2.001249e-49
MsaG000545	MsaG016416	0.829862	7.294433e-55	2.102771e-52
MsaG001045	MsaG016416	0.808358	5.483533e-50	9.000757e-48
MsaG001120	MsaG016416	0.830829	4.243772e-55	1.257632e-52
MsaG001127	MsaG016416	0.804137	4.208741e-49	6.254356e-47
MsaG001291	MsaG016416	0.802346	9.842173e-49	1.403426e-46
MsaG002142	MsaG016416	0.808832	4.348283e-50	7.219622e-48
MsaG002810	MsaG016416	0.813881	3.527812e-51	6.630544e-49
MsaG004010	MsaG016416	0.829610	8.394510e-55	2.402512e-52
MsaG004091	MsaG016416	0.819647	1.820432e-52	3.966346e-50
MsaG005414	MsaG016416	0.815844	1.300928e-51	2.569128e-49
MsaG005831	MsaG016416	0.801564	1.422594e-48	1.992562e-46
MsaG006762	MsaG016416	0.829474	9.055306e-55	2.581437e-52
MsaG007146	MsaG016416	0.805521	2.169127e-49	3.328504e-47
MsaG007286	MsaG016416	0.813122	5.170942e-51	9.535501e-49
MsaG007836	MsaG016416	0.823792	2.024277e-53	4.927275e-51
MsaG008125	MsaG016416	0.836394	1.756229e-56	6.134281e-54
MsaG010307	MsaG016416	0.806644	1.262349e-49	1.989088e-47
MsaG010604	MsaG016416	0.838137	6.316684e-57	2.326524e-54
MsaG011095	MsaG016416	0.819174	2.331539e-52	5.017625e-50
MsaG012012	MsaG016416	0.812330	7.692799e-51	1.390894e-48
MsaG012162	MsaG016416	0.810305	2.106051e-50	3.623409e-48
MsaG012334	MsaG016416	0.811949	9.308328e-51	1.667267e-48
MsaG012565	MsaG016416	0.841830	6.954782e-58	2.876466e-55
MsaG014135	MsaG016416	0.815253	1.758783e-51	3.421824e-49
MsaG014207	MsaG016416	0.814039	3.257432e-51	6.146338e-49
MsaG014554	MsaG016416	0.805259	2.459873e-49	3.751779e-47
MsaG015144	MsaG016416	0.814486	2.596821e-51	4.955290e-49
MsaG015319	MsaG016416	0.823864	1.946642e-53	4.747483e-51
MsaG015719	MsaG016416	0.803167	6.674057e-49	9.697701e-47
MsaG016118	MsaG016416	0.814191	3.015434e-51	5.711649e-49
MsaG016384	MsaG016416	0.824143	1.675936e-53	4.118322e-51
MsaG016416	MsaG017849	0.803800	4.941695e-49	7.286273e-47
MsaG016416	MsaG017867	0.800512	2.328562e-48	3.184945e-46
MsaG016416	MsaG018405	0.843072	3.269150e-58	1.407009e-55
MsaG016416	MsaG018923	0.839378	3.029055e-57	1.159545e-54
MsaG016416	MsaG019435	0.822356	4.361068e-53	1.021081e-50
MsaG016416	MsaG020730	0.803792	4.960941e-49	7.313179e-47
MsaG016416	MsaG020738	0.815046	1.954570e-51	3.782665e-49
MsaG016416	MsaG020850	0.907624	9.893919e-81	8.027575e-77
MsaG016416	MsaG021165	0.821644	6.362851e-53	1.461699e-50
MsaG016416	MsaG021592	0.802559	8.900953e-49	1.275406e-46
MsaG016416	MsaG021996	0.851623	1.504216e-60	8.621876e-58
MsaG016416	MsaG022034	0.800297	2.573944e-48	3.503475e-46
MsaG016416	MsaG022767	0.821972	5.347907e-53	1.239282e-50
MsaG016416	MsaG022880	0.813565	4.137368e-51	7.714824e-49
MsaG016416	MsaG023078	0.809428	3.245827e-50	5.467082e-48
MsaG016416	MsaG023214	0.809653	2.905820e-50	4.920945e-48
MsaG016416	MsaG023302	0.814472	2.615384e-51	4.988970e-49
MsaG016416	MsaG023997	0.827207	3.169428e-54	8.476530e-52
MsaG016416	MsaG024105	0.803380	6.032236e-49	8.808295e-47
MsaG016416	MsaG025334	0.824157	1.662804e-53	4.087629e-51
MsaG016416	MsaG027305	0.812022	8.973040e-51	1.610051e-48
MsaG016416	MsaG027500	0.812030	8.938754e-51	1.604204e-48
MsaG016416	MsaG027526	0.829134	1.093941e-54	3.088275e-52
MsaG016416	MsaG027543	0.824227	1.601575e-53	3.944574e-51
MsaG016416	MsaG027547	0.837602	8.658905e-57	3.137109e-54
MsaG016416	MsaG028483	0.837877	7.364918e-57	2.690849e-54
MsaG016416	MsaG028606	0.840869	1.242001e-57	4.982485e-55
MsaG016416	MsaG028820	0.806323	1.473906e-49	2.304944e-47
MsaG016416	MsaG028968	0.858247	1.834715e-62	1.335249e-59
MsaG016416	MsaG028969	0.831626	2.707580e-55	8.212299e-53
MsaG016416	MsaG028983	0.828875	1.262774e-54	3.539080e-52
MsaG016416	MsaG028928	0.803660	5.281387e-49	7.761913e-47
MsaG016416	MsaG029087	0.820492	1.168724e-52	2.604160e-50
MsaG016416	MsaG029106	0.827391	2.864924e-54	7.701992e-52
MsaG016416	MsaG029162	0.801245	1.651866e-48	2.297033e-46
MsaG016416	MsaG029384	0.805510	2.181120e-49	3.346041e-47
MsaG016416	MsaG029539	0.803275	6.339723e-49	9.234917e-47
MsaG016416	MsaG029635	0.822411	4.234963e-53	9.930169e-51
MsaG016416	MsaG029606	0.813533	4.203801e-51	7.832352e-49
MsaG016416	MsaG029986	0.831433	3.020253e-55	9.108499e-53
MsaG016416	MsaG030197	0.838392	5.435896e-57	2.017872e-54
MsaG016416	MsaG030455	0.830833	4.233653e-55	1.254781e-52
MsaG016416	MsaG030494	0.815330	1.691744e-51	3.297690e-49
MsaG016416	MsaG030698	0.801128	1.745250e-48	2.420512e-46
MsaG016416	MsaG031104	0.807236	9.475641e-50	1.513990e-47
MsaG016416	MsaG032401	0.815011	1.989663e-51	3.847313e-49
MsaG016416	MsaG033570	0.819296	2.187279e-52	4.722340e-50
MsaG016416	MsaG033588	0.806853	1.140465e-49	1.805863e-47
MsaG016416	MsaG034446	0.803126	6.806069e-49	9.880039e-47
MsaG016416	MsaG034763	0.827057	3.442623e-54	9.168272e-52
MsaG016416	MsaG035166	0.801970	1.175055e-48	1.661165e-46
MsaG016416	MsaG036482	0.823205	2.772214e-53	6.641169e-51
MsaG016416	MsaG037421	0.806481	1.365997e-49	2.144188e-47
MsaG016416	MsaG038520	0.818487	3.333034e-52	7.044891e-50
MsaG016416	MsaG039683	0.813880	3.530319e-51	6.634978e-49
MsaG016416	MsaG040450	0.832115	2.053801e-55	6.318778e-53
MsaG016416	MsaG040452	0.817150	6.657225e-52	1.359447e-49
MsaG016416	MsaG040453	0.805147	2.595989e-49	3.949207e-47
MsaG016416	MsaG040511	0.801044	1.815578e-48	2.513228e-46
MsaG016416	MsaG041564	0.806647	1.260640e-49	1.986514e-47
MsaG016416	MsaG042534	0.818273	3.725270e-52	7.830420e-50
MsaG016416	MsaG043029	0.807339	9.009738e-50	1.443167e-47
MsaG016416	MsaG043183	0.805682	2.007556e-49	3.092243e-47
MsaG016416	MsaG044050	0.821308	7.601057e-53	1.730637e-50
MsaG016416	MsaG044316	0.811160	1.378552e-50	2.421830e-48
MsaG016416	MsaG044321	0.814253	2.922842e-51	5.544939e-49
MsaG016416	MsaG045234	0.811354	1.251911e-50	2.209780e-48
MsaG016416	MsaG045242	0.847434	2.189494e-59	1.087943e-56
MsaG016416	MsaG045243	0.866280	6.420918e-65	6.385366e-62
MsaG016416	MsaG045600	0.809076	3.857951e-50	6.443122e-48
MsaG016416	MsaG045646	0.829745	7.786588e-55	2.237048e-52
MsaG016416	MsaG046137	0.820113	1.426256e-52	3.146373e-50
MsaG016416	MsaG046368	0.840296	1.750770e-57	6.898460e-55
MsaG016416	MsaG046740	0.813436	4.414559e-51	8.205109e-49
MsaG016416	MsaG046830	0.827787	2.304088e-54	6.263362e-52
MsaG016416	MsaG002461	0.803050	7.053632e-49	1.022153e-46
MsaG016416	MsaG002387	0.800018	2.931437e-48	3.965205e-46
MsaG016416	MsaG009146	0.806870	1.131262e-49	1.792004e-47
MsaG016416	MsaG006540	0.803363	6.081563e-49	8.876835e-47
MsaG016416	MsaG008699	0.826508	4.648190e-54	1.219176e-51
MsaG016416	MsaG009836	0.816513	9.236043e-52	1.855325e-49
MsaG016416	MsaG012002	0.836038	2.160003e-56	7.463673e-54
MsaG016416	MsaG012745	0.853703	3.859460e-61	2.380569e-58
MsaG016416	MsaG013040	0.817010	7.156542e-52	1.456149e-49
MsaG016416	MsaG019702	0.801016	1.839210e-48	2.544398e-46
MsaG016416	MsaG023034	0.846343	4.339085e-59	2.078670e-56
MsaG016416	MsaG020185	0.811943	9.335028e-51	1.671812e-48
MsaG016416	MsaG020545	0.861028	2.695185e-63	2.179092e-60
MsaG016416	MsaG017922	0.817979	4.337811e-52	9.049276e-50
MsaG016416	MsaG022159	0.840270	1.779115e-57	7.004183e-55
MsaG016416	MsaG027471	0.824372	1.481611e-53	3.663763e-51
MsaG016416	MsaG027637	0.815996	1.203631e-51	2.386181e-49
MsaG016416	MsaG028048	0.821346	7.448597e-53	1.697591e-50
MsaG016416	MsaG029847	0.803733	5.100014e-49	7.508364e-47
MsaG016416	MsaG033330	0.815003	1.997791e-51	3.862263e-49
MsaG016416	MsaG031514	0.824784	1.185976e-53	2.965758e-51
MsaG016416	MsaG030964	0.807993	6.553145e-50	1.066288e-47
MsaG016416	MsaG033560	0.812680	6.457704e-51	1.177761e-48
MsaG016416	MsaG033107	0.846145	4.908515e-59	2.336025e-56
MsaG016416	MsaG032454	0.807003	1.060715e-49	1.685538e-47
MsaG016416	MsaG032721	0.802436	9.431588e-49	1.347633e-46
MsaG016416	MsaG035515	0.817516	5.511769e-52	1.136181e-49
MsaG016416	MsaG040323	0.822379	4.308029e-53	1.009283e-50
MsaG016416	MsaG036355	0.805589	2.099657e-49	3.227023e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016416	MtrunA17_Chr3g0128471	91.829	257	16	3	1	254	1	255	7.45e-167	461

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016416	AT4G19985.6	48.052	231	89	5	17	223	14	237	3.25e-67	208
MsaG016416	AT4G19985.1	48.052	231	89	5	17	223	14	237	3.25e-67	208
MsaG016416	AT4G19985.4	42.205	263	89	6	17	223	14	269	5.05e-60	191
MsaG016416	AT4G19985.2	39.881	168	70	5	17	160	14	174	1.60e-30	112
MsaG016416	AT4G19985.5	39.881	168	70	5	17	160	14	174	1.60e-30	112
MsaG016416	AT4G19985.3	39.881	168	70	5	17	160	14	174	1.60e-30	112
MsaG016416	AT4G19985.7	39.181	171	73	5	17	163	14	177	1.90e-30	112

Find 59 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGAAATCAATGGAATTAAAA+TGG	0.164701	3:+97681593	MsaT016416.1:CDS
GGTCGTGCTGTTTCTGATTT+TGG	0.179788	3:+97681973	MsaT016416.1:CDS
TGGATTTGGTGGTGACATTT+TGG	0.201084	3:+97683655	MsaT016416.1:CDS
TGACGGTTTGCTCACTTTCC+TGG	0.239344	3:-97683721	None:intergenic
TTTGGAGATGTTGAGGATTA+AGG	0.248880	3:-97681714	None:intergenic
CAGGAGTGTCGGAGATATTA+AGG	0.273878	3:-97681780	None:intergenic
TGCAAATGGAGCAGAGGTTT+TGG	0.278048	3:-97681732	None:intergenic
CCTCACCACATTGATGTTGA+TGG	0.296205	3:+97681874	MsaT016416.1:CDS
CCTGAACGTGATTTGTTGAT+TGG	0.298630	3:+97681946	MsaT016416.1:CDS
ATTAAGGTGGTGTGGGTTAG+TGG	0.360151	3:-97681698	None:intergenic
TTGTTGATATCAACTGGTTC+AGG	0.374194	3:-97681799	None:intergenic
CGTGATTTGTTGATTGGGTT+TGG	0.384811	3:+97681952	MsaT016416.1:CDS
CGAAGCTTGTTGATATCAAC+TGG	0.398400	3:-97681805	None:intergenic
CTGAACGTGATTTGTTGATT+GGG	0.419104	3:+97681947	MsaT016416.1:CDS
TGCTTCTATATACGATGTTA+TGG	0.428860	3:+97682002	MsaT016416.1:CDS
TATTCCATCCTTGAGGAGAA+TGG	0.433471	3:+97682621	MsaT016416.1:CDS
TCCTTGAGGAGAATGGGAAT+TGG	0.440922	3:+97682628	MsaT016416.1:CDS
ATTCCATCCTTGAGGAGAAT+GGG	0.454926	3:+97682622	MsaT016416.1:CDS
GTGTCGGAGATATTAAGGTT+GGG	0.458757	3:-97681775	None:intergenic
CCAATCAACAAATCACGTTC+AGG	0.463909	3:-97681946	None:intergenic
CCTCTCATCCTCTGAGCAAA+GGG	0.464970	3:-97683539	None:intergenic
GGAAATGAAAAGTGGGAGAA+GGG	0.466176	3:-97681677	None:intergenic
GAAATCAATGGAATTAAAAT+GGG	0.468872	3:+97681594	MsaT016416.1:CDS
AACAATAGCTTTCGGCCTGC+AGG	0.469985	3:-97683746	None:intergenic
AAATCACGTTCAGGAGAAAC+CGG	0.482910	3:-97681937	None:intergenic
TTTAAGGCTTGTGGATTTGG+TGG	0.483526	3:+97683644	MsaT016416.1:CDS
GAGCAAACCGTCACACCTGC+AGG	0.493036	3:+97683731	MsaT016416.1:CDS
TCCAATTCCCATTCTCCTCA+AGG	0.504293	3:-97682629	None:intergenic
GTGAAAAGAGTGGTTGCAAA+TGG	0.508457	3:-97681746	None:intergenic
GCGGAACCAACAATAGCTTT+CGG	0.512055	3:-97683754	None:intergenic
TGCAGGCCGAAAGCTATTGT+TGG	0.512613	3:+97683748	MsaT016416.1:CDS
AACTGTTTCATCAACAATCC+AGG	0.512965	3:+97683703	MsaT016416.1:CDS
TGTCGGAGATATTAAGGTTG+GGG	0.519931	3:-97681774	None:intergenic
CTTTCGGCCTGCAGGTGTGA+CGG	0.523798	3:-97683738	None:intergenic
ACCTCTCATCCTCTGAGCAA+AGG	0.534812	3:-97683540	None:intergenic
CCCTTTGCTCAGAGGATGAG+AGG	0.537381	3:+97683539	MsaT016416.1:CDS
AGTGTCGGAGATATTAAGGT+TGG	0.549755	3:-97681776	None:intergenic
ATCAACTGGTTCAGGAGTGT+CGG	0.554412	3:-97681791	None:intergenic
TGTTGAGGATTAAGGTGGTG+TGG	0.555356	3:-97681706	None:intergenic
AACAGTTCTCGTGTACATCA+TGG	0.561270	3:-97683687	None:intergenic
GTTGAGGATTAAGGTGGTGT+GGG	0.570563	3:-97681705	None:intergenic
TGGAAATGAAAAGTGGGAGA+AGG	0.570598	3:-97681678	None:intergenic
ATTCCCATTCTCCTCAAGGA+TGG	0.579989	3:-97682625	None:intergenic
GGAGATGTTGAGGATTAAGG+TGG	0.587846	3:-97681711	None:intergenic
TGCAGGTTATTCCATCCTTG+AGG	0.587883	3:+97682614	MsaT016416.1:intron
ACTCAATATTATCATCCTTG+AGG	0.593636	3:-97683800	None:intergenic
GGGTTAGTGGAAATGAAAAG+TGG	0.602812	3:-97681685	None:intergenic
GACAGATTCAAGAATCCTCA+AGG	0.611144	3:+97683785	MsaT016416.1:CDS
GAAATGAAAAGTGGGAGAAG+GGG	0.622002	3:-97681676	None:intergenic
CATAGCAGCCCTTTGCTCAG+AGG	0.625766	3:+97683531	MsaT016416.1:CDS
AGTGGTTGCAAATGGAGCAG+AGG	0.626606	3:-97681738	None:intergenic
TTTCGAAGCGAAAACTTCAG+TGG	0.633639	3:-97681575	None:intergenic
TTCTTGAATCTGTCAATCAG+AGG	0.641603	3:-97683776	None:intergenic
CCATCAACATCAATGTGGTG+AGG	0.651681	3:-97681874	None:intergenic
GGTTAGTGGAAATGAAAAGT+GGG	0.652172	3:-97681684	None:intergenic
TGGGGAATCTGTGAAAAGAG+TGG	0.656361	3:-97681756	None:intergenic
TTGAATCTGTCAATCAGAGG+CGG	0.671155	3:-97683773	None:intergenic
TGATTGTTAGAAAAGTTGTG+AGG	0.694957	3:+97682656	MsaT016416.1:CDS
TTAAACCATCAACATCAATG+TGG	0.739906	3:-97681879	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	97681550	97683811	97681550	ID=MsaG016416
Chr3	mRNA	97681550	97683811	97681550	ID=MsaT016416.1;Parent=MsaG016416
Chr3	exon	97681550	97682023	97681550	ID=MsaT016416.1.exon1;Parent=MsaT016416.1
Chr3	CDS	97681550	97682023	97681550	ID=cds.MsaT016416.1;Parent=MsaT016416.1
Chr3	exon	97682619	97682677	97682619	ID=MsaT016416.1.exon2;Parent=MsaT016416.1
Chr3	CDS	97682619	97682677	97682619	ID=cds.MsaT016416.1;Parent=MsaT016416.1
Chr3	exon	97683504	97683560	97683504	ID=MsaT016416.1.exon3;Parent=MsaT016416.1
Chr3	CDS	97683504	97683560	97683504	ID=cds.MsaT016416.1;Parent=MsaT016416.1
Chr3	exon	97683637	97683811	97683637	ID=MsaT016416.1.exon4;Parent=MsaT016416.1
Chr3	CDS	97683637	97683811	97683637	ID=cds.MsaT016416.1;Parent=MsaT016416.1

Gene Sequence

>MsaT016416.1

ATGGCGGCAACAGGAGTTGCAGCAGCCACTGAAGTTTTCGCTTCGAAATCAATGGAATTAAAATGGGTAAGAACAAGAACAAGAAGAATCACCAAAACCACACACAAACAAAAAACGCTATCAACACCCCTTCTCCCACTTTTCATTTCCACTAACCCACACCACCTTAATCCTCAACATCTCCAAAACCTCTGCTCCATTTGCAACCACTCTTTTCACAGATTCCCCAACCTTAATATCTCCGACACTCCTGAACCAGTTGATATCAACAAGCTTCGCATTGCTCTTTCTCATAGTGACGTTCTTGTCTCTGTCTTCTGTAAACCTCACCACATTGATGTTGATGGTTTAACTGAATCTTCATCTTCCATTGTTGATTTTTTCACGCCGGTTTCTCCTGAACGTGATTTGTTGATTGGGTTTGGTCGTGCTGTTTCTGATTTTGGTCTCACTGCTTCTATATACGATGTTATGGTTATTCCATCCTTGAGGAGAATGGGAATTGGAAAAATGATTGTTAGAAAAGTTGTGAGAATGCTTACAAATAGAGACATCTATGACATAGCAGCCCTTTGCTCAGAGGATGAGAGGTTGTTTTTTAAGGCTTGTGGATTTGGTGGTGACATTTTGGACTCTACTACCATGATGTACACGAGAACTGTTTCATCAACAATCCAGGAAAGTGAGCAAACCGTCACACCTGCAGGCCGAAAGCTATTGTTGGTTCCGCCTCTGATTGACAGATTCAAGAATCCTCAAGGATGA

Protein sequence

>MsaT016416.1

MAATGVAAATEVFASKSMELKWVRTRTRRITKTTHKQKTLSTPLLPLFISTNPHHLNPQHLQNLCSICNHSFHRFPNLNISDTPEPVDINKLRIALSHSDVLVSVFCKPHHIDVDGLTESSSSIVDFFTPVSPERDLLIGFGRAVSDFGLTASIYDVMVIPSLRRMGIGKMIVRKVVRMLTNRDIYDIAALCSEDERLFFKACGFGGDILDSTTMMYTRTVSSTIQESEQTVTPAGRKLLLVPPLIDRFKNPQG*