AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG016493

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016493 MtrunA17_Chr3g0129361 70.902 244 17 2 1 214 1 220 2.61e-120 340
MsaG016493 MtrunA17_Chr8g0383351 57.551 245 58 12 4 214 2 234 2.79e-81 242
MsaG016493 MtrunA17_Chr8g0335811 75.862 87 21 0 118 204 134 220 4.52e-44 147
MsaG016493 MtrunA17_Chr5g0418781 64.198 81 29 0 114 194 100 180 3.43e-31 115
MsaG016493 MtrunA17_Chr1g0194481 62.353 85 31 1 119 203 139 222 1.24e-30 114
MsaG016493 MtrunA17_Chr4g0051881 70.423 71 21 0 124 194 164 234 1.52e-30 114
MsaG016493 MtrunA17_Chr5g0432161 47.200 125 49 2 80 194 360 477 4.94e-30 116
MsaG016493 MtrunA17_Chr5g0432161 56.140 57 24 1 138 194 244 299 1.08e-14 72.4
MsaG016493 MtrunA17_Chr2g0294231 68.056 72 23 0 123 194 188 259 7.36e-30 114
MsaG016493 MtrunA17_Chr5g0445311 39.860 143 66 1 52 194 298 420 3.17e-29 114
MsaG016493 MtrunA17_Chr5g0445311 42.697 89 47 2 122 207 184 271 2.28e-14 71.2
MsaG016493 MtrunA17_Chr5g0443131 66.197 71 24 0 124 194 143 213 5.76e-29 110
MsaG016493 MtrunA17_Chr7g0218081 63.889 72 26 0 123 194 395 466 7.01e-29 112
MsaG016493 MtrunA17_Chr7g0218081 59.649 57 22 1 138 194 228 283 2.10e-16 77.0
MsaG016493 MtrunA17_Chr3g0106491 60.256 78 31 0 117 194 344 421 1.27e-28 112
MsaG016493 MtrunA17_Chr3g0106491 43.678 87 43 3 113 194 168 253 9.54e-16 75.1
MsaG016493 MtrunA17_Chr7g0248721 57.955 88 35 2 118 205 121 206 1.35e-28 107
MsaG016493 MtrunA17_Chr7g0224801 63.768 69 25 0 126 194 81 149 1.83e-28 105
MsaG016493 MtrunA17_Chr4g0068541 68.571 70 22 0 125 194 195 264 1.97e-28 110
MsaG016493 MtrunA17_Chr5g0418191 62.500 72 27 0 123 194 305 376 2.88e-28 110
MsaG016493 MtrunA17_Chr5g0418191 49.367 79 34 3 138 212 151 227 2.50e-15 73.9
MsaG016493 MtrunA17_Chr3g0101131 62.500 72 27 0 123 194 400 471 3.47e-28 111
MsaG016493 MtrunA17_Chr3g0101131 56.140 57 24 1 138 194 243 298 9.44e-15 72.4
MsaG016493 MtrunA17_Chr7g0270191 61.039 77 30 0 118 194 125 201 5.08e-28 107
MsaG016493 MtrunA17_Chr7g0243891 46.667 120 54 3 80 194 316 430 1.87e-27 108
MsaG016493 MtrunA17_Chr7g0243891 50.000 76 35 2 138 211 216 290 3.72e-15 73.6
MsaG016493 MtrunA17_Chr4g0042831 59.722 72 29 0 123 194 263 334 2.63e-27 107
MsaG016493 MtrunA17_Chr4g0042831 47.945 73 37 1 123 194 129 201 8.29e-15 72.4
MsaG016493 MtrunA17_Chr4g0004911 58.228 79 33 0 116 194 314 392 3.22e-27 107
MsaG016493 MtrunA17_Chr4g0004911 52.632 57 27 0 138 194 184 240 2.26e-15 73.9
MsaG016493 MtrunA17_Chr1g0150801 57.500 80 34 0 115 194 79 158 4.13e-27 101
MsaG016493 MtrunA17_Chr3g0079691 62.500 72 27 0 123 194 480 551 4.19e-27 108
MsaG016493 MtrunA17_Chr3g0079691 56.140 57 24 1 138 194 280 335 4.67e-15 73.2
MsaG016493 MtrunA17_Chr8g0386241 46.939 98 50 2 116 213 81 176 1.24e-25 98.2
MsaG016493 MtrunA17_Chr3g0129321 57.895 76 31 1 124 198 104 179 1.84e-25 98.6
MsaG016493 MtrunA17_Chr7g0249311 58.333 72 30 0 123 194 377 448 2.96e-25 102
MsaG016493 MtrunA17_Chr7g0249311 55.172 58 25 1 138 195 179 235 5.29e-16 76.3
MsaG016493 MtrunA17_Chr7g0249301 59.155 71 29 0 124 194 278 348 1.05e-24 99.8
MsaG016493 MtrunA17_Chr7g0249301 52.381 63 29 1 136 198 60 121 1.89e-15 73.9
MsaG016493 MtrunA17_Chr1g0188941 53.947 76 35 0 119 194 32 107 1.35e-24 93.6
MsaG016493 MtrunA17_Chr7g0263531 56.944 72 31 0 123 194 346 417 4.16e-24 99.0
MsaG016493 MtrunA17_Chr7g0263531 57.143 56 23 1 139 194 190 244 1.22e-14 72.0
MsaG016493 MtrunA17_Chr8g0383251 43.925 107 57 2 88 194 61 164 3.68e-23 92.0
MsaG016493 MtrunA17_Chr1g0189391 47.727 88 45 1 125 211 84 171 1.65e-22 93.2
MsaG016493 MtrunA17_Chr5g0447701 51.351 74 36 0 123 196 237 310 1.97e-21 90.9
MsaG016493 MtrunA17_Chr7g0238921 64.912 57 20 0 138 194 124 180 8.36e-21 88.2
MsaG016493 MtrunA17_Chr4g0074001 48.684 76 39 0 119 194 340 415 5.95e-20 87.4
MsaG016493 MtrunA17_Chr6g0485431 48.611 72 36 1 124 194 140 211 9.75e-20 85.9
MsaG016493 MtrunA17_Chr4g0060271 44.318 88 46 2 111 195 226 313 2.02e-19 85.9
MsaG016493 MtrunA17_Chr2g0322391 47.059 85 43 2 125 207 336 420 3.91e-19 85.1
MsaG016493 MtrunA17_Chr4g0075201 39.796 98 58 1 98 194 227 324 4.34e-19 84.7
MsaG016493 MtrunA17_Chr1g0147881 42.105 95 51 2 109 202 236 327 1.15e-18 82.8
MsaG016493 MtrunA17_Chr7g0270831 49.296 71 35 1 125 194 203 273 4.92e-18 81.6
MsaG016493 MtrunA17_Chr3g0099641 45.333 75 40 1 122 195 235 309 7.56e-18 81.3
MsaG016493 MtrunA17_Chr2g0288871 47.887 71 36 1 125 194 292 362 1.28e-17 80.9
MsaG016493 MtrunA17_Chr2g0333851 47.945 73 35 2 125 194 154 226 1.56e-17 79.3
MsaG016493 MtrunA17_Chr7g0216891 38.835 103 58 2 93 194 178 276 8.17e-17 78.6
MsaG016493 MtrunA17_Chr4g0025061 41.489 94 53 2 123 214 345 438 8.45e-17 78.6
MsaG016493 MtrunA17_Chr5g0401821 45.946 74 39 1 125 197 186 259 1.19e-16 76.3
MsaG016493 MtrunA17_Chr3g0139021 51.613 62 29 1 134 194 310 371 1.47e-16 77.4
MsaG016493 MtrunA17_Chr7g0228941 52.459 61 28 1 135 194 49 109 1.85e-16 72.8
MsaG016493 MtrunA17_Chr1g0150281 52.632 57 26 1 139 194 141 197 3.16e-16 75.5
MsaG016493 MtrunA17_Chr4g0071521 39.175 97 53 3 102 195 210 303 3.36e-16 75.9
MsaG016493 MtrunA17_Chr3g0136961 50.000 60 29 1 137 195 137 196 7.15e-16 74.7
MsaG016493 MtrunA17_Chr4g0001361 38.144 97 58 2 109 203 132 228 7.73e-16 74.7
MsaG016493 MtrunA17_Chr2g0302391 36.134 119 68 3 98 213 176 289 9.69e-16 75.1
MsaG016493 MtrunA17_Chr1g0150271 44.615 65 35 1 136 199 99 163 9.82e-16 73.6
MsaG016493 MtrunA17_Chr4g0053281 49.231 65 32 1 134 197 262 326 2.14e-15 73.6
MsaG016493 MtrunA17_Chr4g0051181 45.070 71 38 1 125 194 230 300 3.38e-15 73.6
MsaG016493 MtrunA17_Chr8g0387981 51.471 68 30 1 138 202 132 199 4.68e-15 72.8
MsaG016493 MtrunA17_Chr3g0126391 53.333 60 25 1 137 193 132 191 5.61e-15 72.4
MsaG016493 MtrunA17_Chr1g0184691 47.619 63 32 1 134 195 289 351 6.67e-15 72.4
MsaG016493 MtrunA17_Chr5g0447711 43.243 74 42 0 123 196 215 288 2.68e-14 70.5
MsaG016493 MtrunA17_Chr7g0275531 42.353 85 44 2 122 201 102 186 5.55e-14 69.7
MsaG016493 MtrunA17_Chr4g0025051 39.130 92 54 2 125 214 322 413 6.53e-14 70.1
MsaG016493 MtrunA17_Chr7g0244981 50.847 59 26 1 138 193 122 180 8.43e-14 68.6
MsaG016493 MtrunA17_Chr8g0348311 46.053 76 37 3 139 210 156 231 9.08e-14 68.9
MsaG016493 MtrunA17_Chr5g0432071 41.558 77 43 2 138 213 104 179 1.03e-13 67.4
MsaG016493 MtrunA17_Chr2g0315381 50.820 61 27 1 136 193 142 202 1.50e-13 68.2
MsaG016493 MtrunA17_Chr8g0379461 48.276 58 29 1 139 195 77 134 4.53e-13 66.2
MsaG016493 MtrunA17_Chr2g0315361 45.902 61 30 1 136 193 146 206 5.34e-13 66.6
MsaG016493 MtrunA17_Chr2g0284321 38.095 84 47 2 117 195 10 93 6.46e-13 65.1
MsaG016493 MtrunA17_Chr2g0293481 46.667 60 31 1 136 194 265 324 7.81e-13 66.6
MsaG016493 MtrunA17_Chr8g0387501 47.458 59 30 1 137 194 128 186 1.21e-12 65.1
MsaG016493 MtrunA17_Chr2g0289181 40.845 71 39 2 126 195 4 72 1.33e-12 64.7
MsaG016493 MtrunA17_Chr7g0248691 46.053 76 37 3 139 210 155 230 2.96e-12 64.7
MsaG016493 MtrunA17_Chr8g0347251 41.096 73 40 1 137 206 135 207 3.20e-12 64.7
MsaG016493 MtrunA17_Chr8g0334541 43.750 64 33 1 138 198 103 166 3.28e-12 63.9
MsaG016493 MtrunA17_Chr7g0270051 49.123 57 28 1 139 194 54 110 3.88e-12 63.9
MsaG016493 MtrunA17_Chr7g0244971 45.000 60 30 1 137 193 122 181 4.65e-12 63.9
MsaG016493 MtrunA17_Chr8g0350621 44.068 59 30 1 138 193 111 169 6.87e-12 63.2
MsaG016493 MtrunA17_Chr2g0319961 46.552 58 30 1 139 195 81 138 2.26e-11 61.6
MsaG016493 MtrunA17_Chr2g0315371 42.623 61 32 1 136 193 139 199 5.07e-11 60.8
MsaG016493 MtrunA17_Chr1g0202461 35.443 79 49 2 118 195 242 319 5.32e-11 61.2
MsaG016493 MtrunA17_Chr1g0188961 49.091 55 28 0 158 212 3 57 7.33e-11 56.2
MsaG016493 MtrunA17_Chr4g0024391 35.870 92 57 2 125 214 216 307 8.38e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016493 AT4G39410.1 75.490 102 20 1 118 214 203 304 9.87e-53 172
MsaG016493 AT2G44745.1 65.812 117 31 3 88 199 94 206 1.54e-45 150
MsaG016493 AT1G69310.4 63.415 82 30 0 113 194 122 203 1.50e-32 119
MsaG016493 AT1G69310.2 63.415 82 30 0 113 194 122 203 1.50e-32 119
MsaG016493 AT1G69310.1 63.415 82 30 0 113 194 122 203 1.50e-32 119
MsaG016493 AT1G64000.1 60.000 95 34 2 109 203 88 178 2.64e-32 116
MsaG016493 AT2G46130.1 59.770 87 34 1 119 205 11 96 1.27e-31 111
MsaG016493 AT5G41570.1 59.140 93 37 1 111 203 71 162 1.52e-31 114
MsaG016493 AT5G26170.1 53.535 99 46 0 100 198 75 173 3.37e-31 112
MsaG016493 AT5G49520.1 68.056 72 23 0 123 194 206 277 3.15e-30 115
MsaG016493 AT4G18170.1 61.628 86 32 1 109 194 144 228 8.62e-30 112
MsaG016493 AT5G07100.2 50.000 108 45 2 87 194 99 197 2.73e-29 108
MsaG016493 AT5G07100.2 47.826 69 36 0 126 194 12 80 7.09e-15 70.9
MsaG016493 AT5G07100.4 50.000 108 45 2 87 194 99 197 2.73e-29 108
MsaG016493 AT5G07100.4 47.826 69 36 0 126 194 12 80 7.09e-15 70.9
MsaG016493 AT5G07100.5 50.000 108 45 2 87 194 99 197 2.73e-29 108
MsaG016493 AT5G07100.5 47.826 69 36 0 126 194 12 80 7.09e-15 70.9
MsaG016493 AT5G07100.3 50.000 108 45 2 87 194 99 197 2.73e-29 108
MsaG016493 AT5G07100.3 47.826 69 36 0 126 194 12 80 7.09e-15 70.9
MsaG016493 AT5G13080.1 64.286 70 25 0 125 194 54 123 4.22e-29 106
MsaG016493 AT5G07100.1 50.000 108 45 2 87 194 192 290 4.67e-29 110
MsaG016493 AT5G07100.1 47.826 69 36 0 126 194 105 173 6.12e-15 72.4
MsaG016493 AT1G13960.2 63.889 72 26 0 123 194 241 312 1.47e-28 110
MsaG016493 AT1G13960.2 55.932 59 25 1 138 196 76 133 8.15e-15 72.4
MsaG016493 AT1G29860.1 65.278 72 25 0 123 194 121 192 1.60e-28 108
MsaG016493 AT1G13960.1 63.889 72 26 0 123 194 394 465 1.60e-28 112
MsaG016493 AT1G13960.1 55.932 59 25 1 138 196 229 286 2.32e-15 74.7
MsaG016493 AT2G03340.1 63.889 72 26 0 123 194 400 471 1.94e-28 111
MsaG016493 AT2G03340.1 56.140 57 24 1 138 194 250 305 4.05e-14 70.9
MsaG016493 AT4G26640.5 62.500 72 27 0 123 194 190 261 2.76e-28 110
MsaG016493 AT4G26640.5 54.237 59 26 1 136 194 33 90 5.21e-14 70.5
MsaG016493 AT4G26640.6 62.500 72 27 0 123 194 190 261 2.76e-28 110
MsaG016493 AT4G26640.6 54.237 59 26 1 136 194 33 90 5.21e-14 70.5
MsaG016493 AT4G26640.4 62.500 72 27 0 123 194 190 261 2.76e-28 110
MsaG016493 AT4G26640.4 54.237 59 26 1 136 194 33 90 5.21e-14 70.5
MsaG016493 AT4G26640.3 62.500 72 27 0 123 194 190 261 2.76e-28 110
MsaG016493 AT4G26640.3 54.237 59 26 1 136 194 33 90 5.21e-14 70.5
MsaG016493 AT4G26640.7 62.500 72 27 0 123 194 326 397 4.44e-28 110
MsaG016493 AT4G26640.7 54.237 59 26 1 136 194 169 226 3.08e-14 71.2
MsaG016493 AT4G26640.1 62.500 72 27 0 123 194 294 365 4.57e-28 110
MsaG016493 AT4G26640.1 54.237 59 26 1 136 194 137 194 3.56e-14 70.9
MsaG016493 AT4G26640.2 62.500 72 27 0 123 194 366 437 5.52e-28 110
MsaG016493 AT4G26640.2 54.237 59 26 1 136 194 209 266 3.05e-14 71.2
MsaG016493 AT2G47260.1 59.524 84 33 1 111 194 148 230 7.70e-28 108
MsaG016493 AT2G30250.1 52.941 102 39 1 111 203 292 393 1.16e-27 108
MsaG016493 AT2G30250.1 47.222 72 36 2 138 209 166 235 1.53e-12 66.2
MsaG016493 AT5G46350.1 64.789 71 25 0 124 194 169 239 1.51e-27 107
MsaG016493 AT3G01080.2 63.889 72 26 0 123 194 329 400 1.75e-27 108
MsaG016493 AT3G01080.2 56.140 57 24 1 138 194 205 260 2.50e-15 74.3
MsaG016493 AT2G38470.1 63.889 72 26 0 123 194 347 418 1.91e-27 108
MsaG016493 AT2G38470.1 54.386 57 25 1 138 194 184 239 1.42e-13 69.3
MsaG016493 AT3G01970.1 53.409 88 38 1 125 209 52 139 2.56e-27 102
MsaG016493 AT3G01080.1 63.889 72 26 0 123 194 291 362 2.59e-27 107
MsaG016493 AT3G01080.1 56.140 57 24 1 138 194 167 222 4.46e-15 73.6
MsaG016493 AT5G56270.1 63.889 72 26 0 123 194 472 543 2.72e-27 109
MsaG016493 AT5G56270.1 50.769 65 31 1 130 194 265 328 1.12e-15 75.5
MsaG016493 AT5G64810.1 44.348 115 49 2 85 194 62 166 2.93e-27 103
MsaG016493 AT1G69310.3 58.537 82 30 1 113 194 122 199 6.79e-27 104
MsaG016493 AT4G26440.1 53.659 82 38 0 113 194 347 428 4.02e-26 105
MsaG016493 AT4G26440.1 55.172 58 25 1 138 195 178 234 4.07e-16 76.6
MsaG016493 AT2G46130.2 55.172 87 34 2 119 205 11 92 5.84e-26 97.1
MsaG016493 AT3G62340.1 64.789 71 25 0 124 194 104 174 2.28e-24 97.8
MsaG016493 AT2G37260.2 65.000 60 21 0 135 194 264 323 2.98e-23 95.9
MsaG016493 AT2G37260.2 49.333 75 36 2 139 212 84 157 8.89e-14 69.3
MsaG016493 AT2G37260.3 65.000 60 21 0 135 194 266 325 3.05e-23 95.9
MsaG016493 AT2G37260.3 49.333 75 36 2 139 212 86 159 9.06e-14 69.3
MsaG016493 AT2G37260.1 65.000 60 21 0 135 194 346 405 5.06e-23 96.3
MsaG016493 AT2G37260.1 49.333 75 36 2 139 212 166 239 7.50e-14 70.1
MsaG016493 AT2G21900.1 46.939 98 47 3 105 197 72 169 1.30e-22 91.3
MsaG016493 AT2G04880.2 54.286 70 32 0 125 194 270 339 1.78e-21 92.0
MsaG016493 AT2G04880.2 55.932 59 25 1 136 194 109 166 1.64e-14 72.0
MsaG016493 AT2G04880.1 54.286 70 32 0 125 194 294 363 2.25e-21 91.7
MsaG016493 AT2G04880.1 55.932 59 25 1 136 194 109 166 1.78e-14 72.0
MsaG016493 AT1G55600.1 55.714 70 31 0 125 194 294 363 3.14e-21 91.3
MsaG016493 AT4G30935.1 48.684 76 39 0 119 194 312 387 9.41e-20 87.0
MsaG016493 AT5G15130.2 50.000 72 35 1 125 195 172 243 2.03e-19 86.3
MsaG016493 AT5G15130.1 50.000 72 35 1 125 195 214 285 2.15e-19 86.3
MsaG016493 AT4G31550.1 39.252 107 60 3 109 214 220 322 1.49e-18 82.8
MsaG016493 AT4G31550.2 38.053 113 64 4 104 214 213 321 3.68e-18 81.6
MsaG016493 AT4G04450.2 44.578 83 45 1 113 194 173 255 9.20e-18 81.3
MsaG016493 AT5G43290.1 50.704 71 34 1 125 194 100 170 1.08e-17 79.7
MsaG016493 AT2G25000.2 51.667 60 28 1 137 195 102 161 1.75e-17 78.2
MsaG016493 AT2G25000.4 51.667 60 28 1 137 195 102 161 1.75e-17 78.2
MsaG016493 AT2G25000.3 51.667 60 28 1 137 195 124 183 2.54e-17 78.2
MsaG016493 AT4G04450.1 50.704 71 34 1 125 194 279 349 2.56e-17 80.1
MsaG016493 AT4G31800.2 51.667 60 28 1 136 194 109 168 3.33e-17 77.8
MsaG016493 AT2G25000.1 51.667 60 28 1 137 195 145 204 3.73e-17 78.2
MsaG016493 AT1G62300.1 43.617 94 50 2 102 194 278 369 3.99e-17 79.7
MsaG016493 AT4G31800.1 51.667 60 28 1 136 194 174 233 5.41e-17 78.2
MsaG016493 AT4G22070.4 49.296 71 35 1 125 194 284 354 5.55e-17 79.3
MsaG016493 AT4G22070.3 49.296 71 35 1 125 194 284 354 5.55e-17 79.3
MsaG016493 AT4G22070.2 49.296 71 35 1 125 194 284 354 5.55e-17 79.3
MsaG016493 AT4G22070.1 49.296 71 35 1 125 194 284 354 5.55e-17 79.3
MsaG016493 AT1G80840.1 39.655 116 63 5 82 194 92 203 8.33e-17 77.4
MsaG016493 AT4G01720.1 49.296 71 35 1 125 194 226 296 1.06e-16 78.6
MsaG016493 AT2G23320.1 45.556 90 45 3 109 197 214 300 2.16e-16 76.6
MsaG016493 AT2G24570.1 43.678 87 45 2 109 194 217 300 2.39e-16 76.6
MsaG016493 AT3G01080.3 56.140 57 24 1 138 194 205 260 7.07e-16 75.1
MsaG016493 AT1G18860.1 45.070 71 38 1 125 194 226 296 1.07e-15 75.5
MsaG016493 AT5G28650.1 42.045 88 47 2 109 195 236 320 1.21e-15 74.7
MsaG016493 AT4G24240.1 39.773 88 49 2 109 195 255 339 2.60e-15 73.9
MsaG016493 AT3G04670.1 39.423 104 55 3 93 195 224 320 2.78e-15 73.6
MsaG016493 AT2G30590.1 40.230 87 48 2 109 194 287 370 4.71e-15 73.2
MsaG016493 AT1G68150.1 46.479 71 37 1 125 194 222 292 8.21e-15 72.4
MsaG016493 AT2G40740.1 35.593 118 69 4 81 192 114 230 5.59e-14 69.7
MsaG016493 AT2G40740.3 35.593 118 69 4 81 192 123 239 7.85e-14 69.3
MsaG016493 AT1G66550.2 47.458 59 28 1 138 193 103 161 1.32e-13 68.2
MsaG016493 AT1G69810.2 45.833 72 37 2 125 194 132 203 1.48e-13 68.6
MsaG016493 AT1G66560.1 34.821 112 70 1 85 193 50 161 1.73e-13 67.8
MsaG016493 AT1G69810.1 45.833 72 37 2 125 194 190 261 1.76e-13 68.9
MsaG016493 AT1G66550.1 47.458 59 28 1 138 193 108 166 1.76e-13 67.8
MsaG016493 AT4G01250.1 50.877 57 27 1 139 194 129 185 2.05e-13 68.2
MsaG016493 AT3G56400.1 39.726 73 41 1 136 205 118 190 4.45e-13 67.0
MsaG016493 AT1G29280.1 47.368 57 29 1 139 194 75 131 4.66e-13 66.6
MsaG016493 AT1G66600.1 40.506 79 43 2 137 212 102 179 7.08e-13 65.9
MsaG016493 AT2G34830.1 46.667 60 31 1 136 194 213 272 7.40e-13 67.0
MsaG016493 AT2G34830.2 46.667 60 31 1 136 194 222 281 8.01e-13 67.0
MsaG016493 AT4G12020.10 43.478 69 38 1 137 205 467 534 2.01e-12 66.2
MsaG016493 AT4G12020.3 43.478 69 38 1 137 205 467 534 2.04e-12 66.2
MsaG016493 AT4G12020.2 43.478 69 38 1 137 205 467 534 2.12e-12 66.2
MsaG016493 AT4G12020.4 43.478 69 38 1 137 205 467 534 2.14e-12 66.2
MsaG016493 AT5G52830.1 49.123 57 28 1 139 194 166 222 2.15e-12 65.5
MsaG016493 AT4G12020.6 43.478 69 38 1 137 205 467 534 2.24e-12 66.2
MsaG016493 AT4G12020.8 43.478 69 38 1 137 205 467 534 2.24e-12 66.2
MsaG016493 AT4G12020.7 43.478 69 38 1 137 205 467 534 2.24e-12 66.2
MsaG016493 AT4G12020.5 43.478 69 38 1 137 205 400 467 2.24e-12 66.2
MsaG016493 AT5G01900.1 45.312 64 32 2 132 192 104 167 2.25e-12 64.7
MsaG016493 AT4G12020.1 43.478 69 38 1 137 205 467 534 2.28e-12 66.2
MsaG016493 AT4G12020.9 43.478 69 38 1 137 205 467 534 2.28e-12 66.2
MsaG016493 AT2G40750.1 36.190 105 53 4 109 199 112 216 2.31e-12 65.5
MsaG016493 AT1G30650.1 46.667 60 31 1 136 194 215 274 2.55e-12 65.5
MsaG016493 AT4G23550.1 44.262 61 33 1 135 194 137 197 2.55e-12 65.1
MsaG016493 AT4G12020.11 43.478 69 38 1 137 205 467 534 3.37e-12 65.5
MsaG016493 AT1G80590.1 46.552 58 28 1 139 193 86 143 8.67e-12 62.8
MsaG016493 AT5G22570.1 47.368 57 27 1 139 192 111 167 1.90e-11 62.4
MsaG016493 AT5G24110.1 39.759 83 38 2 136 206 111 193 2.90e-11 62.0
MsaG016493 AT5G45050.4 47.368 57 29 1 139 194 1042 1098 5.83e-11 62.0
MsaG016493 AT5G45050.2 47.368 57 29 1 139 194 1153 1209 6.53e-11 61.6
MsaG016493 AT5G45050.1 47.368 57 29 1 139 194 1181 1237 6.86e-11 61.6
MsaG016493 AT4G11070.2 44.286 70 36 1 138 204 109 178 9.14e-11 60.5

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATCTTACTTCTAGTTT+TGG 0.279525 3:+98538770 MsaT016493.1:CDS
TCAGCAAAATTTGCAGCTTC+AGG 0.298513 3:-98538704 None:intergenic
TATGTGGTTATCACCATTCT+TGG 0.301275 3:-98540645 None:intergenic
GATTCTTCAAGTTCATTTGA+TGG 0.326616 3:-98540690 None:intergenic
AAACATGACCTTACCTCCTT+TGG 0.332541 3:+98538622 MsaT016493.1:CDS
CTGAACTTACTAATTTCTTC+TGG 0.337305 3:+98540724 MsaT016493.1:CDS
ACAGATCCAAAGTGAATTCA+TGG 0.376673 3:+98538819 MsaT016493.1:CDS
CTTTGGATCTGTTCAAAGAA+AGG 0.382028 3:-98538808 None:intergenic
AAAGGAGGTAAGGTCATGTT+TGG 0.420084 3:-98538620 None:intergenic
TCATGAGATCCCTATGCAAA+TGG 0.425861 3:+98538577 MsaT016493.1:CDS
CCATAGCTTGTTTGATCAAG+AGG 0.452922 3:+98538550 MsaT016493.1:CDS
TACCTTTCAAAGATTGATGA+TGG 0.466958 3:-98538652 None:intergenic
TGAAGAAAATGAAGGGAAGA+AGG 0.467112 3:+98539370 MsaT016493.1:CDS
AGAAGGAAGGTGAGGAGCCT+AGG 0.468448 3:+98539387 MsaT016493.1:CDS
CATGAGATCCCTATGCAAAT+GGG 0.477999 3:+98538578 MsaT016493.1:CDS
ATCTCACCATGAATTCACTT+TGG 0.483028 3:-98538825 None:intergenic
AAGGTCATGTTTGGAGGGAA+AGG 0.503288 3:-98538611 None:intergenic
ACGTGTGGAGCGGTTGGCTG+AGG 0.504103 3:+98540620 MsaT016493.1:CDS
TTGAACAGCTGTTGCAAGGA+GGG 0.504686 3:-98538729 None:intergenic
ATCTGTTCAAAGAAAGGAGT+TGG 0.513213 3:-98538802 None:intergenic
CCTCTTGATCAAACAAGCTA+TGG 0.514036 3:-98538550 None:intergenic
AATAAAGATGAAGAAAATGA+AGG 0.519125 3:+98539362 MsaT016493.1:CDS
AGCATGTCTTCCTTCATATG+TGG 0.525478 3:-98540661 None:intergenic
GCAATTATCCAAAGGAGGTA+AGG 0.525699 3:-98538630 None:intergenic
GAAAATGAAGGGAAGAAGGA+AGG 0.526149 3:+98539374 MsaT016493.1:CDS
GGAGGTAAGGTCATGTTTGG+AGG 0.539020 3:-98538617 None:intergenic
TGAAGGGAAGAAGGAAGGTG+AGG 0.539101 3:+98539379 MsaT016493.1:CDS
GGTTACAAGTGGAGGAAGTA+CGG 0.540793 3:+98539452 MsaT016493.1:CDS
TGCCATCATCAATCTTTGAA+AGG 0.544773 3:+98538650 MsaT016493.1:CDS
TATTGAACCCCATTTGCATA+GGG 0.544992 3:-98538586 None:intergenic
ATATTGAACCCCATTTGCAT+AGG 0.547777 3:-98538587 None:intergenic
ATAAAGATGAAGAAAATGAA+GGG 0.547814 3:+98539363 MsaT016493.1:CDS
ATGGTGATAACCACATATGA+AGG 0.551016 3:+98540651 MsaT016493.1:CDS
AAAGAAACGTGTGGAGCGGT+TGG 0.558270 3:+98540614 MsaT016493.1:CDS
GCTTCAGGAGAAAGTGATGA+AGG 0.566189 3:-98538689 None:intergenic
GACGTGGATGTGTTGGATGA+TGG 0.572793 3:+98539431 MsaT016493.1:CDS
GAGGTAAGGTCATGTTTGGA+GGG 0.578786 3:-98538616 None:intergenic
GAGGAAGTACGGACAGAAAG+TGG 0.580020 3:+98539463 MsaT016493.1:CDS
TATGAGCGACGTGGATGTGT+TGG 0.583583 3:+98539424 MsaT016493.1:CDS
GTTGGCTGAGGATCCAAGAA+TGG 0.588263 3:+98540632 MsaT016493.1:CDS
TAAAGAACACACAGCATCCA+AGG 0.591239 3:+98539486 MsaT016493.1:CDS
AGATGATCTTCAAATTCTCG+TGG 0.612771 3:-98538755 None:intergenic
GACAATTATCTTGTGTGCAA+CGG 0.619219 3:-98540587 None:intergenic
TGGATGATGGTTACAAGTGG+AGG 0.635586 3:+98539444 MsaT016493.1:CDS
ATGAGATCCCTATGCAAATG+GGG 0.638441 3:+98538579 MsaT016493.1:CDS
TGATGATGGCAATTATCCAA+AGG 0.643521 3:-98538638 None:intergenic
ATAGTCTTGAAGCAAAACCT+AGG 0.654328 3:-98539404 None:intergenic
TTGTCGAGTAAAGAAACGTG+TGG 0.654452 3:+98540605 MsaT016493.1:CDS
CTTCAAGACTATGAGCGACG+TGG 0.655053 3:+98539415 MsaT016493.1:CDS
TGTTGGATGATGGTTACAAG+TGG 0.666245 3:+98539441 MsaT016493.1:CDS
TTTGAACAGCTGTTGCAAGG+AGG 0.670990 3:-98538730 None:intergenic
TGATGGCAATTATCCAAAGG+AGG 0.672690 3:-98538635 None:intergenic
GAGTAAAGAAACGTGTGGAG+CGG 0.683085 3:+98540610 MsaT016493.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 98538524 98540749 98538524 ID=MsaG016493
Chr3 mRNA 98538524 98540749 98538524 ID=MsaT016493.1;Parent=MsaG016493
Chr3 exon 98538524 98538840 98538524 ID=MsaT016493.1.exon1;Parent=MsaT016493.1
Chr3 CDS 98538524 98538840 98538524 ID=cds.MsaT016493.1;Parent=MsaT016493.1
Chr3 exon 98539352 98539507 98539352 ID=MsaT016493.1.exon2;Parent=MsaT016493.1
Chr3 CDS 98539352 98539507 98539352 ID=cds.MsaT016493.1;Parent=MsaT016493.1
Chr3 exon 98540578 98540749 98540578 ID=MsaT016493.1.exon3;Parent=MsaT016493.1
Chr3 CDS 98540578 98540749 98540578 ID=cds.MsaT016493.1;Parent=MsaT016493.1
Gene Sequence

>MsaT016493.1

ATGTCAACAACAAATATTGTTAATCACCATAGCTTGTTTGATCAAGAGGAAGATCATGAGATCCCTATGCAAATGGGGTTCAATATTCCTTTCCCTCCAAACATGACCTTACCTCCTTTGGATAATTGCCATCATCAATCTTTGAAAGGTATCAGTGCAATAACACCTTCATCACTTTCTCCTGAAGCTGCAAATTTTGCTGAAACCCTCCTTGCAACAGCTGTTCAAAAACCACGAGAATTTGAAGATCATCTTACTTCTAGTTTTGGAGGAGGAGGCCAACTCCTTTCTTTGAACAGATCCAAAGTGAATTCATGGGGTTTCTGCAATAAAGATGAAGAAAATGAAGGGAAGAAGGAAGGTGAGGAGCCTAGGTTTTGCTTCAAGACTATGAGCGACGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGGTTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAATGAACTTGAAGAATCACAAACTCAATCTGAACTTACTAATTTCTTCTGGTAG
Protein sequence

>MsaT016493.1

MSTTNIVNHHSLFDQEEDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPEAANFAETLLATAVQKPREFEDHLTSSFGGGGQLLSLNRSKVNSWGFCNKDEENEGKKEGEEPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEESQTQSELTNFFW*