AlfalfaGEDB | MsaG016506

M. sativa ssp. caerulea / MsaG016506

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576
PFAM: PF08711.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016506	XP_003602530.1	98.319	357	6	0	1	357	1	357	0.0	726

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016506	sp\|F4KFC7\|MD26C_ARATH	53.804	368	144	10	1	357	1	353	1.40e-115	342

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016506	G7JAV9	98.319	357	6	0	1	357	1	357	0.0	726

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TFs/TRs:

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Gene ID	Type	Classification
MsaG016506	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG016506	0.834505	5.243996e-56	1.730771e-53
MsaG000015	MsaG016506	0.830332	5.607525e-55	1.638322e-52
MsaG000030	MsaG016506	0.818959	2.608246e-52	5.581362e-50
MsaG000045	MsaG016506	0.834957	4.041950e-56	1.352142e-53
MsaG000083	MsaG016506	0.813552	4.163883e-51	7.761743e-49
MsaG000115	MsaG016506	0.870348	3.179177e-66	3.738293e-63
MsaG000135	MsaG016506	0.804498	3.541907e-49	5.307610e-47
MsaG000151	MsaG016506	0.803417	5.928546e-49	8.664105e-47
MsaG000153	MsaG016506	0.815738	1.373304e-51	2.704801e-49
MsaG000188	MsaG016506	0.821815	5.812454e-53	1.341280e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016506	MtrunA17_Chr3g0129551	98.319	357	6	0	1	357	1	357	0.0	726
MsaG016506	MtrunA17_Chr7g0255811	31.163	215	119	5	3	200	6	208	3.09e-23	100
MsaG016506	MtrunA17_Chr6g0466661	52.000	75	34	2	52	126	7	79	4.14e-13	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016506	AT5G09850.1	53.804	368	144	10	1	357	1	353	1.43e-116	342
MsaG016506	AT5G09850.4	53.804	368	144	10	1	357	1	353	1.43e-116	342
MsaG016506	AT5G09850.2	53.804	368	144	10	1	357	1	353	1.43e-116	342
MsaG016506	AT5G09850.5	53.804	368	144	10	1	357	1	353	1.43e-116	342
MsaG016506	AT5G09850.3	51.632	337	140	8	1	326	1	325	3.19e-99	297
MsaG016506	AT5G05140.1	25.728	412	220	13	3	334	7	412	4.82e-21	94.4
MsaG016506	AT3G10820.1	29.500	200	117	6	1	199	8	184	4.35e-15	76.3
MsaG016506	AT3G10820.2	28.000	200	120	4	1	199	8	184	1.41e-14	75.5

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Find 95 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAGACGGTGAAGATG+AGG	0.609578	3:+98748837	MsaT016506.1:CDS
AAAGGTGGTGGCAGTTCTCA+AGG	0.538937	3:+98750377	MsaT016506.1:CDS
AACTACAAAGAGGCCGATAA+TGG	0.421647	3:+98750183	MsaT016506.1:CDS
AAGACCCACCTCCAAAACCA+AGG	0.647167	3:+98749930	MsaT016506.1:CDS
AAGAGGGAAAAGCACTCTCA+TGG	0.508075	3:+98749457	MsaT016506.1:CDS
AATCAATCACCTTCAACTCT+TGG	0.433018	3:-98749108	None:intergenic
AATCGACGAACATTGCTTGA+TGG	0.437135	3:-98749278	None:intergenic
AATCGGAGTAACCTCCGTGG+TGG	0.706021	3:-98748677	None:intergenic
ACACGGCGGGCGTTGACGTC+TGG	0.362780	3:+98748560	MsaT016506.1:CDS
ACATTCTGAGGAGCAGAGGT+AGG	0.580912	3:-98749974	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	98748529	98750415	98748529	ID=MsaG016506
Chr3	mRNA	98748529	98750415	98748529	ID=MsaT016506.1;Parent=MsaG016506
Chr3	exon	98748529	98748942	98748529	ID=MsaT016506.1.exon1;Parent=MsaT016506.1
Chr3	CDS	98748529	98748942	98748529	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98749052	98749120	98749052	ID=MsaT016506.1.exon2;Parent=MsaT016506.1
Chr3	CDS	98749052	98749120	98749052	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98749236	98749318	98749236	ID=MsaT016506.1.exon3;Parent=MsaT016506.1
Chr3	CDS	98749236	98749318	98749236	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98749412	98749479	98749412	ID=MsaT016506.1.exon4;Parent=MsaT016506.1
Chr3	CDS	98749412	98749479	98749412	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98749596	98749648	98749596	ID=MsaT016506.1.exon5;Parent=MsaT016506.1
Chr3	CDS	98749596	98749648	98749596	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98749733	98749766	98749733	ID=MsaT016506.1.exon6;Parent=MsaT016506.1
Chr3	CDS	98749733	98749766	98749733	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98749858	98749994	98749858	ID=MsaT016506.1.exon7;Parent=MsaT016506.1
Chr3	CDS	98749858	98749994	98749858	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98750111	98750204	98750111	ID=MsaT016506.1.exon8;Parent=MsaT016506.1
Chr3	CDS	98750111	98750204	98750111	ID=cds.MsaT016506.1;Parent=MsaT016506.1
Chr3	exon	98750294	98750415	98750294	ID=MsaT016506.1.exon9;Parent=MsaT016506.1
Chr3	CDS	98750294	98750415	98750294	ID=cds.MsaT016506.1;Parent=MsaT016506.1

Gene Sequence

>MsaT016506.1

ATGGATTTGGACGATTTCCGATCTATATTACACACGGCGGGCGTTGACGTCTGGATGTTCATCGACACCGCGATCTCCGTCGCTGCGCAGGATAACGCCGGTGAGCTAAAGAGGAGAAGAGACGGAATCGTGGAGCGTCTCTACGCTGCCACCACGGAGGTTACTCCGATTTGCCAGAATTGCGACGGAGGTCAACGTCTTGTGACAAACGATAACCAAATCAAGAAAGAGAACAGTCCTAGTCTGAGTCCGGAACGACAACCGCGCCGCGGCGGAGCTTCTTCTCCTCCGACGCCGCAGTCTGAAGGAAACGAAGACGGTGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCTTCTAGAAGATCCTCATCAGTCTGAAGATACTTTGATGGAGTTGCTACAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATAGGGAGGAACGTGAATCAGTTGCGAAAACATCCATCAAGCAATGTTCGTCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGATTGGGTGAAGCAGAATCCACAAAGAGGGAAAAGCACTCTCATGGCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATAATCATCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGTTCCGACCGTAACACCTCCGAAGCTGAACCAAAACCAAAACCTAAATCAGTTCCTCGCAAAGACCCACCTCCAAAACCAAGGCCATCCCCCCCAGTTACTGCCCCTACCTCTGCTCCTCAGAATAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCAGAGAGGCTTGCTGCTGCAAGAAAACGGCTTCAAGCGAACTACAAAGAGGCCGATAATGCAAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAATGGTTACTTTGCAAAGCACAAAGGTGGTGGCAGTTCTCAAGGAAGGCAGCACTGGTGA

Protein sequence

>MsaT016506.1

MDLDDFRSILHTAGVDVWMFIDTAISVAAQDNAGELKRRRDGIVERLYAATTEVTPICQNCDGGQRLVTNDNQIKKENSPSLSPERQPRRGGASSPPTPQSEGNEDGEDEEIDPYGGLFDDEQKKILEIKELLEDPHQSEDTLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSNVRRLVKLLVKKWKEIVDDWVKQNPQRGKSTLMADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKPKSVPRKDPPPKPRPSPPVTAPTSAPQNRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIHELPKSKAKNGYFAKHKGGGSSQGRQHW*