AlfalfaGEDB | MsaG016539

M. sativa ssp. caerulea / MsaG016539

KEGG: -
GO: -
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016539	XP_003602587.2	95.335	986	28	2	1	969	1	985	0.0	1945

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016539	sp\|Q9LIH5\|C3H38_ARATH	34.192	427	182	15	579	969	305	668	7.45e-41	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016539	G7JBH8	95.335	986	28	2	1	969	1	985	0.0	1945

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TFs/TRs:

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Gene ID	Type	Classification
MsaG016539	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016539	MtrunA17_Chr3g0129941	92.901	986	29	3	1	969	1	962	0.0	1853
MsaG016539	MtrunA17_Chr8g0384131	46.286	700	295	17	292	969	131	771	6.43e-171	518
MsaG016539	MtrunA17_Chr8g0384131	53.150	254	91	6	1	244	1	236	1.62e-57	212
MsaG016539	MtrunA17_Chr2g0308451	45.833	96	52	0	874	969	1345	1440	1.20e-19	95.5
MsaG016539	MtrunA17_Chr2g0282581	45.238	84	46	0	886	969	800	883	1.01e-15	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016539	AT3G18640.3	34.192	427	182	15	579	969	305	668	7.57e-42	164
MsaG016539	AT3G18640.1	34.192	427	182	15	579	969	305	668	7.57e-42	164
MsaG016539	AT3G18640.2	34.192	427	182	15	579	969	305	668	7.57e-42	164
MsaG016539	AT2G10553.1	73.973	73	19	0	897	969	2	74	6.45e-30	114
MsaG016539	AT3G26850.2	48.235	85	41	1	888	969	173	257	3.10e-18	86.3
MsaG016539	AT3G26850.1	48.235	85	41	1	888	969	173	257	3.10e-18	86.3
MsaG016539	AT2G33835.1	44.872	78	42	1	893	969	502	579	3.96e-14	77.0

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Find 239 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGGTAATTCAATTA+AGG	0.210347	3:+99121234	MsaT016539.1:CDS
AAAGCTTAACAAACTTGTAC+AGG	0.519903	3:+99121663	MsaT016539.1:CDS
AAAGGCTAAGAGATGATAGG+TGG	0.588164	3:+99120037	MsaT016539.1:CDS
AAAGTTGTTGATAAAGTAAC+GGG	0.454132	3:+99121571	MsaT016539.1:CDS
AACAGAATACAACTTGCTCC+AGG	0.591084	3:+99120485	MsaT016539.1:CDS
AACATTTGATGATCTCTACT+TGG	0.448605	3:-99119976	None:intergenic
AACCCAGGAAGAGAAAACTT+GGG	0.660535	3:+99121220	MsaT016539.1:CDS
AACTTGGGTAATTCAATTAA+GGG	0.430799	3:+99121235	MsaT016539.1:CDS
AAGAATAGTCCCTGCTCTCG+TGG	0.625384	3:-99119690	None:intergenic
AAGCAAACAAAGGAAATGAA+AGG	0.591168	3:+99121442	MsaT016539.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	99116386	99122146	99116386	ID=MsaG016539
Chr3	mRNA	99116386	99122146	99116386	ID=MsaT016539.1;Parent=MsaG016539
Chr3	exon	99116386	99116720	99116386	ID=MsaT016539.1.exon1;Parent=MsaT016539.1
Chr3	CDS	99116386	99116720	99116386	ID=cds.MsaT016539.1;Parent=MsaT016539.1
Chr3	exon	99118907	99120227	99118907	ID=MsaT016539.1.exon2;Parent=MsaT016539.1
Chr3	CDS	99118907	99120227	99118907	ID=cds.MsaT016539.1;Parent=MsaT016539.1
Chr3	exon	99120278	99120506	99120278	ID=MsaT016539.1.exon3;Parent=MsaT016539.1
Chr3	CDS	99120278	99120506	99120278	ID=cds.MsaT016539.1;Parent=MsaT016539.1
Chr3	exon	99120666	99121684	99120666	ID=MsaT016539.1.exon4;Parent=MsaT016539.1
Chr3	CDS	99120666	99121684	99120666	ID=cds.MsaT016539.1;Parent=MsaT016539.1
Chr3	exon	99122117	99122146	99122117	ID=MsaT016539.1.exon5;Parent=MsaT016539.1
Chr3	CDS	99122117	99122146	99122117	ID=cds.MsaT016539.1;Parent=MsaT016539.1

Gene Sequence

>MsaT016539.1

ATGAGTGGAGCTGGCAGAAAGCACTCTTCAAAGTGGGATTTGAGTGATGAGCATAAATTCTCACCTGGTAGCAAGCAAATGCGGTCTGGACGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCAGAATGGGCTTATTTGGAAGGAAATGATAAATTAAGACCTGTTACGGGATTTTCATCAAAGGAATCTTATTATGGAGGCAGAGGTTCAAATGAGAACGATGCTATGAATAAAGACCATAGAGTTTTTAATTCAAGAAGAGAATGGGACACTGATGGAAGTTACAGCAGGAACATGAGACACAGTCAGTCCCCTAAAAATGACTGGAGCAGGAACAGTCGGAGCCGGAGTCGGAGCCCTCCTCGTGGTTTCAGGTGGGATTCAGGAGTTGATGGTAGAAAAAGGACGAGGGTTGGAGGATCAACACGACCGTGCAGAGATTTTGCTGTTGGAAAATGTAGAAGAGGTAGTCATTGCAATTTTCTGCATCATGATAACCAAAATCGTGAGAATAGTTGGGAAGGTAGGCACAGGGAAGATGGAGCTCCCAGATACTCTGCTACCCATGAGAGTGTTGACCATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGCAGCTGTAGAATGGGAGCATCTTGCAAGTTTGTGCATGATTACGATTCTGATGGATATGGTAAAGTTTCTATGGATGAGTTCACTAGAGAAAGGGAAGATGAAGCTCTCAGATATCCTGCTACCCATGAGAGCAGGGACCATTCTCTTAAGAGTGGTAGATCTAATGAATTCATTAGAGAAAGAGAAGATGGAGCTCGCAGATATCCTGCTACCCATGAGAGCAGGGACCATTCTCTTAAGAGTGGTAGATCTAATGAATTCACTAGAGAAAGGGAAAATGGAGGTCCCAGATATTCTGCTACCTATGAGAGCAGGGACCATTCTCCAAAGAGTGGTAGATCTAATGAATTCACTAGTGAAAGGGAAGATGGAGCTCCCAGATATCCTACTACCCATGAGAGCAGGGACTATTCTCTTAAGAGTGGTAGATCTAATGAATTCACTAGTGAAAGGGAAGATGGAGCTCCCAGATATCCTACTAACCACGAGAGCAGGGACTATTCTTTTAAGGGCGGTAGATCTAATGACGAATATGGCAAAGTTTTTATGGATGAATTCACTAGAGAAAGAGAAGTTGGCAGAAGGCACAGAGATAATTCTTTTCAGCAGGGTGGTGGCCGGCATGTGCCTAACCGCACTATTGATGCTCCTTGCAAATTTTTTGCTAGTGGAAATTGTCGAAATGGTAAACATTGTAGGTTTTCTCACGATACGCAAGCATGTAGGAGCCCTATTAGAAGATTAAGGGATGATAGATGGACAAGAAATCCAAGTAGAGATCATCAAATGTTGGATAGACGAAAATTGAGTGACTCCATTAGTCCAAATAAAAGGCTAAGAGATGATAGGTGGGGTTCAGATAGTGACATGGCTGATCCTGATAGAGTCGAGGACAGTCCAAAGCAGAATGATACAGTTTCTGGCTCTGATACAGCAAAGCTGATCGAGAATAAAAGTGGAAATGTAGGTACCACAGAGCCAGAATTTACTGATTTGCCTATAACGGATGGATGGGGCATGAAGGAAGCTGATCTTTGGATAGCAGAAAATACTGGTGCCAACATGCATGGTTCCCAGTCAATAGGTACAACGGACATTTGGCCGGGTGATGCAGAAATGTCTCCTGATTGGAATTATAGGATGGGGTCTTCCAGCCATATGGAAGAACATAAACAGAAGGAACATGATGTAAGCCAGGGTGGTACATATCTAGCCATCTCTGAACACAACAGAATACAACTTGCTCCAGGACAAAACATCAATCAGAATACAGAGAATGTAAATCCTTTGCATACTTCCAGCTGCCATGCAGTTGGACAAAGTCAAGTGGATGTTCCCATTCTTTCTTCAAGAGAAGGCATTGTTGATGCTATACACAGCCAGGAAGTATCTACTGAGCAAAAGTACACCGGAGAACCAAGTATTATGGATTCAGGCTTATCACAAGTTAGTTCAATAAATCCTCCAGTTCAAAACGTAGTAAGCAATGAACAGCTTGCTCAACTCACGAATCTCTCAGCCTCTCTGGCTCATATCCTTGGAGCAGGTCAGCAGCTGCCGCAGCTATATGCTGCTTTAAATTCTCATGAATTGAAGGACAGTCCTTCCCAAGCAAAAATTCAAGTGCCTGCAATGCCTATTTCAATCACATGCATCAAGCCAGATCCTGCCGTTGAACTCCCAAAACAGTATGATCCAATGAATGATAGTATTGAGCAAAAGAATGCTGATGCAAGTGGCGTACCCCCAGCCATTCCTCCAAGTAAAACTATTGCCGAAGTAGAAATTCTGTCGCAGTTGTCTAACCCAGGAAGAGAAAACTTGGGTAATTCAATTAAGGGTGCCTCCTCAGAACATGTCAAGAGTGATAATCTAATCCATTTGCAGCCTGGTCAAAACACGGTGGTCAATAAGGATAACAATGAAGAGGTAGCTAAGGAAAGGAAAAATTCTCAAGATGGTCATAAAAGTACCAAAGAGAATGGTCCTCAAAACATGGACCAAAATGCTGGACCTGATGATGCCAAGCAAACAAAGGAAATGAAAGGATCACGTGCATTTAAATTTGCATTGGCTGAGTTTGTTAAGGAGCTTCTGAAACCAACTTGGAAAGAAGGTAAAATCACTAAAGAAGATTATAAAACGATTGTGAAGAAAGTTGTTGATAAAGTAACGGGTACCATCCAGGAGGCCAATATTCCGCAGACACAAGAAAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGGAAAAGGCTTTGCTGCTGCTGTTTGCTAA

Protein sequence

>MsaT016539.1

MSGAGRKHSSKWDLSDEHKFSPGSKQMRSGRSSADVAGSNSSEWAYLEGNDKLRPVTGFSSKESYYGGRGSNENDAMNKDHRVFNSRREWDTDGSYSRNMRHSQSPKNDWSRNSRSRSRSPPRGFRWDSGVDGRKRTRVGGSTRPCRDFAVGKCRRGSHCNFLHHDNQNRENSWEGRHREDGAPRYSATHESVDHSLKSGRSNEACINFAKGSCRMGASCKFVHDYDSDGYGKVSMDEFTREREDEALRYPATHESRDHSLKSGRSNEFIREREDGARRYPATHESRDHSLKSGRSNEFTRERENGGPRYSATYESRDHSPKSGRSNEFTSEREDGAPRYPTTHESRDYSLKSGRSNEFTSEREDGAPRYPTNHESRDYSFKGGRSNDEYGKVFMDEFTREREVGRRHRDNSFQQGGGRHVPNRTIDAPCKFFASGNCRNGKHCRFSHDTQACRSPIRRLRDDRWTRNPSRDHQMLDRRKLSDSISPNKRLRDDRWGSDSDMADPDRVEDSPKQNDTVSGSDTAKLIENKSGNVGTTEPEFTDLPITDGWGMKEADLWIAENTGANMHGSQSIGTTDIWPGDAEMSPDWNYRMGSSSHMEEHKQKEHDVSQGGTYLAISEHNRIQLAPGQNINQNTENVNPLHTSSCHAVGQSQVDVPILSSREGIVDAIHSQEVSTEQKYTGEPSIMDSGLSQVSSINPPVQNVVSNEQLAQLTNLSASLAHILGAGQQLPQLYAALNSHELKDSPSQAKIQVPAMPISITCIKPDPAVELPKQYDPMNDSIEQKNADASGVPPAIPPSKTIAEVEILSQLSNPGRENLGNSIKGASSEHVKSDNLIHLQPGQNTVVNKDNNEEVAKERKNSQDGHKSTKENGPQNMDQNAGPDDAKQTKEMKGSRAFKFALAEFVKELLKPTWKEGKITKEDYKTIVKKVVDKVTGTIQEANIPQTQEKIDQYLSFSKPKLNKLVQGKGFAAAVC*