AlfalfaGEDB | MsaG016709

M. sativa ssp. caerulea / MsaG016709

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016709	XP_013461663.1	98.350	303	3	2	1	302	1	302	0.0	607

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016709	sp\|Q93W88\|BH137_ARATH	48.069	233	97	6	74	299	57	272	3.37e-58	191

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016709	A0A072V2W2	98.350	303	3	2	1	302	1	302	0.0	607

TFs/TRs:

Gene ID	Type	Classification
MsaG016709	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000260	MsaG016709	0.806758	1.194422e-49	1.887154e-47
MsaG000705	MsaG016709	0.807402	8.738870e-50	1.401871e-47
MsaG000778	MsaG016709	0.805509	2.181692e-49	3.346864e-47
MsaG000761	MsaG016709	0.843789	2.108753e-58	9.286615e-56
MsaG001259	MsaG016709	0.822456	4.134784e-53	9.706812e-51
MsaG001277	MsaG016709	0.817062	6.965141e-52	1.419130e-49
MsaG004072	MsaG016709	0.808208	5.902800e-50	9.654058e-48
MsaG004091	MsaG016709	0.804561	3.437062e-49	5.158048e-47
MsaG004298	MsaG016709	0.808633	4.794341e-50	7.921865e-48
MsaG005278	MsaG016709	0.812141	8.457383e-51	1.521905e-48
MsaG005352	MsaG016709	0.810606	1.814711e-50	3.145141e-48
MsaG005776	MsaG016709	0.829337	9.772059e-55	2.774748e-52
MsaG006284	MsaG016709	0.809815	2.683239e-50	4.561814e-48
MsaG006512	MsaG016709	0.804873	2.959790e-49	4.474097e-47
MsaG007063	MsaG016709	0.815216	1.793010e-51	3.485030e-49
MsaG007099	MsaG016709	0.818936	2.639108e-52	5.644136e-50
MsaG007269	MsaG016709	0.802939	7.436543e-49	1.074877e-46
MsaG007653	MsaG016709	0.807844	7.046657e-50	1.142484e-47
MsaG007664	MsaG016709	0.806854	1.140313e-49	1.805650e-47
MsaG008888	MsaG016709	0.807065	1.029384e-49	1.638138e-47
MsaG008954	MsaG016709	0.806200	1.564364e-49	2.439305e-47
MsaG009248	MsaG016709	0.830492	5.127288e-55	1.504758e-52
MsaG009424	MsaG016709	0.826448	4.803365e-54	1.257830e-51
MsaG010113	MsaG016709	0.802587	8.784446e-49	1.259509e-46
MsaG010363	MsaG016709	0.808616	4.835070e-50	7.985778e-48
MsaG010602	MsaG016709	0.804449	3.626303e-49	5.427787e-47
MsaG010604	MsaG016709	0.800922	1.921940e-48	2.653176e-46
MsaG010792	MsaG016709	0.806385	1.430470e-49	2.240307e-47
MsaG010807	MsaG016709	0.841525	8.364516e-58	3.426204e-55
MsaG011075	MsaG016709	0.805782	1.913770e-49	2.954674e-47
MsaG011100	MsaG016709	0.804930	2.880575e-49	4.360050e-47
MsaG011213	MsaG016709	0.840644	1.421382e-57	5.662105e-55
MsaG011559	MsaG016709	0.837780	7.797655e-57	2.840596e-54
MsaG011625	MsaG016709	0.824158	1.662115e-53	4.086022e-51
MsaG011678	MsaG016709	0.835803	2.475892e-56	8.495045e-54
MsaG011823	MsaG016709	0.805680	2.009219e-49	3.094686e-47
MsaG012026	MsaG016709	0.850893	2.413916e-60	1.349204e-57
MsaG012487	MsaG016709	0.804960	2.839074e-49	4.300250e-47
MsaG012649	MsaG016709	0.805120	2.630084e-49	3.998471e-47
MsaG013429	MsaG016709	0.822011	5.237556e-53	1.214990e-50
MsaG013553	MsaG016709	0.834577	5.031286e-56	1.664155e-53
MsaG013883	MsaG016709	0.808941	4.121904e-50	6.861712e-48
MsaG013968	MsaG016709	0.808981	4.043209e-50	6.737040e-48
MsaG014039	MsaG016709	0.802972	7.320379e-49	1.058888e-46
MsaG014305	MsaG016709	0.820015	1.501808e-52	3.304378e-50
MsaG014471	MsaG016709	0.810461	1.949640e-50	3.367174e-48
MsaG015195	MsaG016709	0.815242	1.768902e-51	3.440514e-49
MsaG015330	MsaG016709	0.812431	7.313317e-51	1.325621e-48
MsaG015584	MsaG016709	0.802211	1.049098e-48	1.491244e-46
MsaG016056	MsaG016709	0.804791	3.078377e-49	4.644452e-47
MsaG016372	MsaG016709	0.825790	6.876469e-54	1.767944e-51
MsaG016709	MsaG016911	0.830171	6.137044e-55	1.784792e-52
MsaG016709	MsaG017063	0.811222	1.336724e-50	2.351917e-48
MsaG016709	MsaG017407	0.805128	2.619784e-49	3.983630e-47
MsaG016709	MsaG017479	0.810171	2.250375e-50	3.858993e-48
MsaG016709	MsaG017567	0.858181	1.918082e-62	1.392427e-59
MsaG016709	MsaG017713	0.801595	1.401854e-48	1.964945e-46
MsaG016709	MsaG018889	0.801477	1.481837e-48	2.071484e-46
MsaG016709	MsaG019139	0.809930	2.535048e-50	4.321768e-48
MsaG016709	MsaG019134	0.806346	1.457705e-49	2.280834e-47
MsaG016709	MsaG019176	0.801314	1.599612e-48	2.227890e-46
MsaG016709	MsaG020697	0.805800	1.897225e-49	2.930348e-47
MsaG016709	MsaG020714	0.851397	1.742304e-60	9.908682e-58
MsaG016709	MsaG021090	0.818119	4.034959e-52	8.447869e-50
MsaG016709	MsaG021320	0.831231	3.383679e-55	1.014409e-52
MsaG016709	MsaG022363	0.801181	1.702441e-48	2.363973e-46
MsaG016709	MsaG022579	0.827297	3.016829e-54	8.088932e-52
MsaG016709	MsaG023235	0.824555	1.342324e-53	3.335828e-51
MsaG016709	MsaG023529	0.822676	3.677725e-53	8.685274e-51
MsaG016709	MsaG023612	0.824928	1.097343e-53	2.755006e-51
MsaG016709	MsaG023681	0.809877	2.601476e-50	4.429462e-48
MsaG016709	MsaG023913	0.816060	1.165346e-51	2.313974e-49
MsaG016709	MsaG024752	0.802169	1.069709e-48	1.519112e-46
MsaG016709	MsaG024877	0.811111	1.412492e-50	2.478455e-48
MsaG016709	MsaG025448	0.820626	1.089283e-52	2.435673e-50
MsaG016709	MsaG026280	0.842771	3.929317e-58	1.674899e-55
MsaG016709	MsaG026826	0.827537	2.643912e-54	7.136992e-52
MsaG016709	MsaG026901	0.859782	6.396781e-63	4.932571e-60
MsaG016709	MsaG027225	0.814412	2.696594e-51	5.136226e-49
MsaG016709	MsaG027293	0.806329	1.469923e-49	2.299031e-47
MsaG016709	MsaG027891	0.810741	1.697604e-50	2.951830e-48
MsaG016709	MsaG028035	0.803946	4.608102e-49	6.817626e-47
MsaG016709	MsaG028159	0.803883	4.749280e-49	7.016001e-47
MsaG016709	MsaG029621	0.804977	2.816129e-49	4.267173e-47
MsaG016709	MsaG029871	0.819257	2.232442e-52	4.814824e-50
MsaG016709	MsaG030089	0.830406	5.378681e-55	1.574859e-52
MsaG016709	MsaG030455	0.810002	2.446179e-50	4.177618e-48
MsaG016709	MsaG031763	0.847559	2.023209e-59	1.009515e-56
MsaG016709	MsaG032594	0.837541	8.972179e-57	3.244743e-54
MsaG016709	MsaG033531	0.840582	1.475516e-57	5.866256e-55
MsaG016709	MsaG033589	0.830595	4.838868e-55	1.424332e-52
MsaG016709	MsaG033606	0.840418	1.627698e-57	6.438121e-55
MsaG016709	MsaG033651	0.819889	1.604142e-52	3.517671e-50
MsaG016709	MsaG033851	0.807407	8.717341e-50	1.398594e-47
MsaG016709	MsaG033872	0.807468	8.463232e-50	1.359803e-47
MsaG016709	MsaG034554	0.846485	3.970471e-59	1.910975e-56
MsaG016709	MsaG034866	0.802000	1.158555e-48	1.638928e-46
MsaG016709	MsaG038522	0.810866	1.595757e-50	2.783191e-48
MsaG016709	MsaG038999	0.844248	1.590374e-58	7.109671e-56
MsaG016709	MsaG039899	0.815892	1.269346e-51	2.509860e-49
MsaG016709	MsaG039839	0.801126	1.746634e-48	2.422345e-46
MsaG016709	MsaG040511	0.821703	6.168737e-53	1.419297e-50
MsaG016709	MsaG040519	0.808847	4.317091e-50	7.170403e-48
MsaG016709	MsaG040748	0.802095	1.107655e-48	1.570325e-46
MsaG016709	MsaG041746	0.828389	1.653366e-54	4.571107e-52
MsaG016709	MsaG041778	0.833067	1.195546e-55	3.781472e-53
MsaG016709	MsaG042814	0.826871	3.810790e-54	1.009679e-51
MsaG016709	MsaG044776	0.806326	1.471688e-49	2.301656e-47
MsaG016709	MsaG044869	0.811171	1.370922e-50	2.409093e-48
MsaG016709	MsaG045018	0.800505	2.335660e-48	3.194167e-46
MsaG016709	MsaG045413	0.825682	7.291048e-54	1.868912e-51
MsaG016709	MsaG046149	0.801930	1.197472e-48	1.691309e-46
MsaG016709	MsaG046278	0.836367	1.783563e-56	6.224888e-54
MsaG016709	MsaG046484	0.821439	7.093133e-53	1.620552e-50
MsaG016709	MsaG002644	0.842155	5.711265e-58	2.386785e-55
MsaG016709	MsaG003078	0.803302	6.260464e-49	9.124954e-47
MsaG016709	MsaG002355	0.854227	2.731122e-61	1.716458e-58
MsaG016709	MsaG003294	0.814256	2.918722e-51	5.537486e-49
MsaG016709	MsaG001868	0.819936	1.565153e-52	3.436472e-50
MsaG016709	MsaG001992	0.844301	1.539515e-58	6.894013e-56
MsaG016709	MsaG008315	0.807125	9.998429e-50	1.593418e-47
MsaG016709	MsaG008505	0.824202	1.623439e-53	3.995715e-51
MsaG016709	MsaG013930	0.829731	7.845563e-55	2.253122e-52
MsaG016709	MsaG014339	0.811647	1.082193e-50	1.923955e-48
MsaG016709	MsaG016523	0.825772	6.943970e-54	1.784385e-51
MsaG016709	MsaG018949	0.832075	2.101244e-55	6.457121e-53
MsaG016709	MsaG021526	0.824865	1.135451e-53	2.845695e-51
MsaG016709	MsaG020304	0.811373	1.240253e-50	2.190210e-48
MsaG016709	MsaG027426	0.800077	2.851961e-48	3.862753e-46
MsaG016709	MsaG032293	0.817775	4.822632e-52	1.000752e-49
MsaG016709	MsaG030749	0.819594	1.871623e-52	4.072225e-50
MsaG016709	MsaG038289	0.802414	9.533135e-49	1.361455e-46
MsaG016709	MsaG038133	0.842687	4.134176e-58	1.757516e-55
MsaG016709	MsaG036115	0.817598	5.282059e-52	1.091133e-49
MsaG016709	MsaG037636	0.807733	7.440620e-50	1.203127e-47
MsaG016709	MsaG036344	0.822652	3.724434e-53	8.789853e-51
MsaG016709	MsaG044124	0.810145	2.279624e-50	3.906683e-48
MsaG016709	MsaG044505	0.803643	5.324114e-49	7.821529e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016709	MtrunA17_Chr3g0131771	98.350	303	3	2	1	302	1	302	0.0	607
MsaG016709	MtrunA17_Chr8g0385911	59.032	310	94	11	1	295	1	292	1.78e-95	285
MsaG016709	MtrunA17_Chr3g0144641	63.200	125	30	1	111	219	139	263	5.51e-43	152
MsaG016709	MtrunA17_Chr7g0234761	57.516	153	45	3	86	218	236	388	9.96e-43	153
MsaG016709	MtrunA17_Chr8g0365941	69.091	110	31	1	113	219	268	377	1.46e-42	152
MsaG016709	MtrunA17_Chr8g0339091	62.500	136	40	4	109	236	245	377	1.78e-42	152
MsaG016709	MtrunA17_Chr1g0152131	61.667	120	37	2	121	234	228	344	1.84e-42	151
MsaG016709	MtrunA17_Chr5g0415291	61.475	122	45	2	98	218	63	183	2.46e-42	145
MsaG016709	MtrunA17_Chr5g0421111	56.738	141	49	2	91	219	297	437	3.29e-41	150
MsaG016709	MtrunA17_Chr4g0035101	70.642	109	28	3	113	219	109	215	1.81e-40	144
MsaG016709	MtrunA17_Chr8g0363921	86.667	75	10	0	144	218	148	222	6.28e-40	140
MsaG016709	MtrunA17_Chr1g0174161	55.652	115	42	2	144	252	157	268	1.74e-36	133
MsaG016709	MtrunA17_Chr7g0258161	68.889	90	25	1	144	233	170	256	1.67e-35	130
MsaG016709	MtrunA17_Chr6g0484271	56.452	124	34	4	112	231	134	241	1.89e-35	129
MsaG016709	MtrunA17_Chr4g0074161	41.722	151	71	4	147	293	206	343	1.96e-23	99.4
MsaG016709	MtrunA17_Chr1g0190731	61.039	77	29	1	136	212	182	257	1.21e-21	93.6
MsaG016709	MtrunA17_Chr4g0014771	60.000	65	26	0	147	211	118	182	4.89e-18	80.5
MsaG016709	MtrunA17_Chr4g0032951	61.538	65	25	0	147	211	355	419	4.29e-17	81.3
MsaG016709	MtrunA17_Chr1g0182791	40.952	105	60	2	118	221	287	390	3.26e-16	79.0
MsaG016709	MtrunA17_Chr1g0174271	50.633	79	39	0	147	225	298	376	5.09e-16	77.8
MsaG016709	MtrunA17_Chr1g0184841	40.909	132	72	2	110	236	78	208	1.59e-15	75.1
MsaG016709	MtrunA17_Chr7g0258181	53.731	67	31	0	147	213	243	309	3.49e-15	74.7
MsaG016709	MtrunA17_Chr2g0329041	55.385	65	29	0	145	209	330	394	4.22e-15	75.1
MsaG016709	MtrunA17_Chr1g0193321	37.273	110	64	3	107	212	418	526	6.27e-15	75.1
MsaG016709	MtrunA17_Chr3g0087771	53.846	65	30	0	147	211	322	386	3.09e-14	72.8
MsaG016709	MtrunA17_Chr5g0402031	37.391	115	67	3	112	222	67	180	1.13e-12	67.8
MsaG016709	MtrunA17_Chr3g0095391	47.945	73	36	2	149	221	311	381	1.74e-12	67.4
MsaG016709	MtrunA17_Chr8g0351881	49.231	65	33	0	147	211	316	380	1.93e-12	67.0
MsaG016709	MtrunA17_Chr1g0153241	39.130	92	54	2	149	239	87	177	4.74e-12	65.1
MsaG016709	MtrunA17_Chr1g0152651	53.125	64	29	1	148	211	275	337	6.60e-12	65.5
MsaG016709	MtrunA17_Chr1g0213791	50.000	64	32	0	147	210	265	328	1.30e-11	64.3
MsaG016709	MtrunA17_Chr7g0262691	44.872	78	36	2	150	221	255	331	3.50e-11	63.5
MsaG016709	MtrunA17_Chr3g0134741	48.052	77	38	2	148	223	230	305	3.93e-11	62.8
MsaG016709	MtrunA17_Chr5g0393721	46.753	77	39	2	148	223	225	300	7.55e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016709	AT5G50915.1	48.069	233	97	6	74	299	57	272	3.42e-59	191
MsaG016709	AT5G50915.2	48.069	233	97	6	74	299	57	272	3.42e-59	191
MsaG016709	AT5G50915.3	50.228	219	82	6	74	286	57	254	4.31e-59	190
MsaG016709	AT5G50915.4	50.228	219	82	6	74	286	57	254	4.31e-59	190
MsaG016709	AT1G68920.1	57.718	149	59	2	86	234	243	387	1.30e-46	164
MsaG016709	AT1G68920.4	57.718	149	59	2	86	234	243	387	1.30e-46	164
MsaG016709	AT1G68920.2	57.718	149	59	2	86	234	243	387	1.30e-46	164
MsaG016709	AT1G68920.3	56.209	153	54	2	92	234	237	386	1.40e-46	163
MsaG016709	AT1G59640.1	68.966	116	31	2	108	218	92	207	9.59e-45	153
MsaG016709	AT1G10120.2	60.976	123	45	1	112	234	171	290	1.04e-44	156
MsaG016709	AT1G10120.1	60.976	123	45	1	112	234	171	290	1.04e-44	156
MsaG016709	AT3G07340.2	65.079	126	43	1	93	218	205	329	2.69e-44	156
MsaG016709	AT1G26260.3	52.353	170	49	4	94	234	90	256	3.58e-44	154
MsaG016709	AT1G26260.5	52.353	170	49	4	94	234	119	285	4.57e-44	154
MsaG016709	AT3G07340.1	65.079	126	43	1	93	218	205	329	4.99e-44	156
MsaG016709	AT1G26260.4	52.353	170	49	4	94	234	141	307	6.90e-44	154
MsaG016709	AT1G26260.1	52.353	170	49	4	94	234	141	307	6.90e-44	154
MsaG016709	AT1G26260.6	52.353	170	49	4	94	234	141	307	6.90e-44	154
MsaG016709	AT1G26260.2	52.353	170	49	4	94	234	141	307	6.90e-44	154
MsaG016709	AT1G59640.2	68.966	116	31	2	108	218	92	207	1.67e-43	152
MsaG016709	AT5G48560.2	83.146	89	15	0	139	227	293	381	2.06e-43	155
MsaG016709	AT5G48560.1	83.146	89	15	0	139	227	293	381	3.79e-43	154
MsaG016709	AT3G23690.1	60.000	135	41	4	112	234	146	279	5.97e-42	149
MsaG016709	AT4G34530.1	87.179	78	10	0	142	219	167	244	3.39e-41	146
MsaG016709	AT5G62610.2	71.910	89	25	0	130	218	136	224	7.69e-39	138
MsaG016709	AT5G62610.1	71.910	89	25	0	130	218	136	224	7.69e-39	138
MsaG016709	AT4G36540.2	57.143	133	46	3	111	235	97	226	2.68e-38	137
MsaG016709	AT4G36540.1	57.143	133	46	3	111	235	97	226	2.90e-38	137
MsaG016709	AT2G18300.1	49.057	159	70	4	85	243	131	278	7.49e-38	137
MsaG016709	AT2G18300.2	55.556	135	52	3	85	219	131	257	1.55e-37	136
MsaG016709	AT2G18300.3	55.556	135	52	3	85	219	131	257	2.56e-37	136
MsaG016709	AT2G42300.4	64.583	96	31	1	144	239	182	274	7.03e-37	133
MsaG016709	AT1G18400.2	71.264	87	24	1	145	231	143	228	7.89e-37	132
MsaG016709	AT3G57800.2	71.111	90	23	1	144	233	201	287	9.74e-37	135
MsaG016709	AT1G18400.1	71.264	87	24	1	145	231	143	228	1.15e-36	132
MsaG016709	AT1G73830.2	68.478	92	28	1	146	237	146	236	4.55e-36	130
MsaG016709	AT1G73830.1	70.930	86	24	1	146	231	146	230	9.46e-36	129
MsaG016709	AT2G42300.1	66.304	92	28	1	144	235	182	270	1.30e-35	131
MsaG016709	AT1G25330.1	52.518	139	54	4	99	231	51	183	1.01e-33	123
MsaG016709	AT3G57800.1	46.763	139	24	2	144	235	201	336	6.04e-28	112
MsaG016709	AT2G24260.2	65.753	73	24	1	140	212	28	99	1.44e-23	97.1
MsaG016709	AT2G24260.1	65.753	73	24	1	140	212	131	202	1.19e-22	96.7
MsaG016709	AT5G58010.1	52.941	102	37	3	147	244	99	193	2.39e-22	95.1
MsaG016709	AT4G30980.1	71.212	66	18	1	147	212	130	194	3.38e-22	94.7
MsaG016709	AT4G30980.2	71.212	66	18	1	147	212	178	242	4.76e-22	95.1
MsaG016709	AT2G42300.5	83.721	43	7	0	144	186	182	224	6.28e-19	84.0
MsaG016709	AT2G42300.3	83.721	43	7	0	144	186	182	224	6.28e-19	84.0
MsaG016709	AT2G42300.2	83.721	43	7	0	144	186	182	224	7.75e-19	84.0
MsaG016709	AT4G09180.1	53.731	67	31	0	145	211	182	248	3.46e-15	74.3
MsaG016709	AT1G35460.1	53.846	65	30	0	147	211	181	245	3.53e-15	74.3
MsaG016709	AT2G42280.1	54.688	64	29	0	147	210	279	342	5.67e-15	75.1
MsaG016709	AT2G42280.3	56.061	66	27	1	147	210	279	344	8.57e-15	74.3
MsaG016709	AT1G51140.1	57.812	64	27	0	147	210	304	367	8.95e-15	74.3
MsaG016709	AT4G28790.1	47.297	74	38	1	149	222	273	345	1.73e-14	73.9
MsaG016709	AT1G09530.3	43.820	89	46	2	124	212	317	401	1.96e-14	73.9
MsaG016709	AT1G09530.2	43.820	89	46	2	124	212	317	401	1.96e-14	73.9
MsaG016709	AT1G09530.5	43.820	89	46	2	124	212	317	401	1.96e-14	73.9
MsaG016709	AT1G09530.1	43.820	89	46	2	124	212	317	401	1.96e-14	73.9
MsaG016709	AT1G09530.4	43.820	89	46	2	124	212	317	401	1.96e-14	73.9
MsaG016709	AT1G09530.6	43.820	89	46	2	124	212	317	401	1.96e-14	73.9
MsaG016709	AT4G02590.3	40.310	129	63	4	109	224	36	163	4.60e-14	70.9
MsaG016709	AT4G28800.1	48.611	72	36	1	150	221	252	322	4.90e-14	72.4
MsaG016709	AT4G02590.2	40.310	129	63	4	109	224	99	226	5.12e-14	71.6
MsaG016709	AT4G02590.1	40.310	129	63	4	109	224	99	226	5.12e-14	71.6
MsaG016709	AT2G20180.7	52.381	63	29	1	150	212	210	271	6.74e-14	72.0
MsaG016709	AT2G20180.1	52.381	63	29	1	150	212	210	271	6.74e-14	72.0
MsaG016709	AT2G20180.5	52.381	63	29	1	150	212	210	271	6.74e-14	72.0
MsaG016709	AT2G20180.4	52.381	63	29	1	150	212	281	342	7.05e-14	72.0
MsaG016709	AT2G20180.6	52.381	63	29	1	150	212	281	342	7.05e-14	72.0
MsaG016709	AT2G20180.2	52.381	63	29	1	150	212	281	342	7.05e-14	72.0
MsaG016709	AT2G20180.3	52.381	63	29	1	150	212	281	342	7.05e-14	72.0
MsaG016709	AT4G28815.2	50.000	70	33	2	150	218	71	139	7.43e-14	70.1
MsaG016709	AT4G28815.1	50.000	70	33	2	150	218	147	215	2.48e-13	69.7
MsaG016709	AT1G03040.2	53.659	82	33	2	147	224	139	219	4.00e-13	68.9
MsaG016709	AT1G03040.1	53.659	82	33	2	147	224	144	224	4.42e-13	68.9
MsaG016709	AT2G43140.1	53.125	64	30	0	147	210	134	197	6.15e-13	67.0
MsaG016709	AT2G43140.2	53.125	64	30	0	147	210	231	294	7.22e-13	68.2
MsaG016709	AT1G03040.3	53.659	82	33	2	147	224	144	224	7.86e-13	68.6
MsaG016709	AT4G28800.2	52.459	61	28	1	150	210	264	323	1.38e-12	68.2
MsaG016709	AT2G20180.8	51.667	60	28	1	150	209	281	339	1.89e-12	67.4
MsaG016709	AT1G27740.1	36.170	141	72	5	86	223	118	243	3.21e-12	65.9
MsaG016709	AT4G00050.2	49.275	69	34	1	143	211	101	168	1.27e-11	64.7
MsaG016709	AT4G00050.1	49.275	69	34	1	143	211	203	270	2.29e-11	64.3
MsaG016709	AT1G05805.1	48.438	64	33	0	147	210	283	346	2.31e-11	64.3
MsaG016709	AT4G00050.3	49.275	69	34	1	143	211	203	270	2.85e-11	63.9
MsaG016709	AT4G28790.2	45.455	66	35	1	149	214	273	337	4.59e-11	63.2
MsaG016709	AT2G14760.1	45.349	86	42	3	147	228	237	321	5.03e-11	63.2
MsaG016709	AT4G33880.1	50.769	65	31	1	147	211	266	329	9.82e-11	62.4

Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGAGGGTTAGTATTGTTTC+TGG	0.191984	3:-101134056	None:intergenic
TCCACAGTCTTCCATGGTTC+TGG	0.296713	3:+101133967	MsaT016709.1:CDS
GCAAAAGTTGTGCCTTGTTT+AGG	0.309108	3:-101135319	None:intergenic
CTCAGTTATGGTAGTAACTT+TGG	0.320242	3:-101133912	None:intergenic
AGCTGCTAATGACTACCTTT+TGG	0.330118	3:+101135378	MsaT016709.1:CDS
AAAAGATCAGAGAAAGTGTT+TGG	0.372452	3:+101134461	MsaT016709.1:CDS
GGACGTGGATATAGCCAGTT+GGG	0.373564	3:-101134491	None:intergenic
AACTGTGAAGGTGGAGGAGG+AGG	0.387298	3:-101133842	None:intergenic
TCCCTTTGTAACCAGGTAAC+TGG	0.390578	3:+101134902	MsaT016709.1:intron
AACAGACCTAGACACTCTTT+TGG	0.397586	3:+101135133	MsaT016709.1:CDS
GTTCTGGACAAGCTTGAAAA+TGG	0.416319	3:+101133983	MsaT016709.1:CDS
TGAAACTGTGAAGGTGGAGG+AGG	0.419275	3:-101133845	None:intergenic
AGAAGGTTCATTCTCAGTTA+TGG	0.434337	3:-101133924	None:intergenic
TTATCAGAAATTAAATAACT+TGG	0.449559	3:+101135255	MsaT016709.1:intron
TGGCCTGACCCCTTCTTGCT+CGG	0.454614	3:-101134512	None:intergenic
TAGCCACAGCCTTGCTGAAA+GGG	0.456249	3:+101134539	MsaT016709.1:CDS
GACCCCTTCTTGCTCGGACG+TGG	0.465774	3:-101134506	None:intergenic
CGTCCGAGCAAGAAGGGGTC+AGG	0.472206	3:+101134509	MsaT016709.1:CDS
GAAGATGTTGGTTGGAGTCA+TGG	0.483883	3:-101135353	None:intergenic
GAAGAGAGAAAATAAGTGAA+AGG	0.496748	3:+101134702	MsaT016709.1:CDS
GACACAGATGATAATGTTGA+TGG	0.508396	3:-101135283	None:intergenic
ATTAGCAGCTTGGAAGATGT+TGG	0.513901	3:-101135365	None:intergenic
AATATTATTACATGAGAGTG+AGG	0.517794	3:-101134073	None:intergenic
TGACAGGATAATGCAGCAGA+AGG	0.520312	3:+101134384	MsaT016709.1:intron
AAGTTGCAGCAACTTGTGCC+AGG	0.526665	3:+101134731	MsaT016709.1:CDS
GGGTGAAACTGTGAAGGTGG+AGG	0.526667	3:-101133848	None:intergenic
ATAGCCACAGCCTTGCTGAA+AGG	0.530497	3:+101134538	MsaT016709.1:CDS
ACTTGTGCCAGGCTGTGATA+AGG	0.531492	3:+101134742	MsaT016709.1:CDS
AAAGGTAGTCATTAGCAGCT+TGG	0.531755	3:-101135375	None:intergenic
CCATGGAAGACTGTGGACTA+AGG	0.533292	3:-101133961	None:intergenic
CCTTAGTCCACAGTCTTCCA+TGG	0.535388	3:+101133961	MsaT016709.1:CDS
GCAGCTTGGAAGATGTTGGT+TGG	0.538644	3:-101135361	None:intergenic
TTAATAATATCTTGATGAAG+AGG	0.545994	3:-101133869	None:intergenic
AGCAAGGCTGTGGCTATCAG+TGG	0.554257	3:-101134532	None:intergenic
TATCCACGTCCGAGCAAGAA+GGG	0.556525	3:+101134503	MsaT016709.1:CDS
TTGAAGCTGAAGTATCCAAA+AGG	0.556829	3:-101135393	None:intergenic
GTTCTCCTCTTCTTCTCCGT+AGG	0.559768	3:-101134034	None:intergenic
CGGACGTGGATATAGCCAGT+TGG	0.559837	3:-101134492	None:intergenic
ATAGTCCTACGGAGAAGAAG+AGG	0.562653	3:+101134029	MsaT016709.1:CDS
AATGATGAGTCAACAAGGAA+AGG	0.563177	3:-101133794	None:intergenic
ATGAGTCAACAAGGAAAGGA+TGG	0.563812	3:-101133790	None:intergenic
ATACCCTTTCAGCAAGGCTG+TGG	0.567250	3:-101134542	None:intergenic
TGACCTACCTTATCACAGCC+TGG	0.577941	3:-101134749	None:intergenic
GTCTAACCAAAAGAGTGTCT+AGG	0.588703	3:-101135139	None:intergenic
TTCAAGCTTGTCCAGAACCA+TGG	0.592122	3:-101133978	None:intergenic
GTTGCCATGTCATAGAACAT+AGG	0.595363	3:-101135113	None:intergenic
ATATCCACGTCCGAGCAAGA+AGG	0.602822	3:+101134502	MsaT016709.1:CDS
AGAGGGTGAAACTGTGAAGG+TGG	0.604355	3:-101133851	None:intergenic
GTCTTTACAGAATCAAGTAG+AGG	0.604540	3:+101134964	MsaT016709.1:CDS
GTCATCAAATGTTGTCTCTG+AGG	0.606377	3:+101135435	MsaT016709.1:CDS
TTGTAACCAGGTAACTGGAA+AGG	0.610256	3:+101134907	MsaT016709.1:intron
ATATTATTACATGAGAGTGA+GGG	0.611838	3:-101134072	None:intergenic
TAATAATATCTTGATGAAGA+GGG	0.621927	3:-101133868	None:intergenic
GACGTGGATATAGCCAGTTG+GGG	0.624086	3:-101134490	None:intergenic
GACAGGATAATGCAGCAGAA+GGG	0.624145	3:+101134385	MsaT016709.1:intron
ATCCACGTCCGAGCAAGAAG+GGG	0.635705	3:+101134504	MsaT016709.1:CDS
TCCAGAACCATGGAAGACTG+TGG	0.648687	3:-101133968	None:intergenic
GCATGAATGATGAGTCAACA+AGG	0.650211	3:-101133799	None:intergenic
CATTGCAATAGTCCTAAACA+AGG	0.657273	3:+101135307	MsaT016709.1:CDS
TGTACTATACCCTTTCAGCA+AGG	0.661128	3:-101134548	None:intergenic
TGAAGAGGGTGAAACTGTGA+AGG	0.663457	3:-101133854	None:intergenic
GAATCCTATGTTCTATGACA+TGG	0.666100	3:+101135109	MsaT016709.1:CDS
ACGTGGATATAGCCAGTTGG+GGG	0.714907	3:-101134489	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	101133767	101135777	101133767	ID=MsaG016709
Chr3	mRNA	101133767	101135777	101133767	ID=MsaT016709.1;Parent=MsaG016709
Chr3	exon	101133767	101134084	101133767	ID=MsaT016709.1.exon1;Parent=MsaT016709.1
Chr3	CDS	101133767	101134084	101133767	ID=cds.MsaT016709.1;Parent=MsaT016709.1
Chr3	exon	101134390	101134560	101134390	ID=MsaT016709.1.exon2;Parent=MsaT016709.1
Chr3	CDS	101134390	101134560	101134390	ID=cds.MsaT016709.1;Parent=MsaT016709.1
Chr3	exon	101134698	101134763	101134698	ID=MsaT016709.1.exon3;Parent=MsaT016709.1
Chr3	CDS	101134698	101134763	101134698	ID=cds.MsaT016709.1;Parent=MsaT016709.1
Chr3	exon	101134917	101134985	101134917	ID=MsaT016709.1.exon4;Parent=MsaT016709.1
Chr3	CDS	101134917	101134985	101134917	ID=cds.MsaT016709.1;Parent=MsaT016709.1
Chr3	exon	101135083	101135166	101135083	ID=MsaT016709.1.exon5;Parent=MsaT016709.1
Chr3	CDS	101135083	101135166	101135083	ID=cds.MsaT016709.1;Parent=MsaT016709.1
Chr3	exon	101135262	101135456	101135262	ID=MsaT016709.1.exon6;Parent=MsaT016709.1
Chr3	CDS	101135262	101135456	101135262	ID=cds.MsaT016709.1;Parent=MsaT016709.1
Chr3	exon	101135769	101135777	101135769	ID=MsaT016709.1.exon7;Parent=MsaT016709.1
Chr3	CDS	101135769	101135777	101135769	ID=cds.MsaT016709.1;Parent=MsaT016709.1

Gene Sequence

>MsaT016709.1

ATGGCAGCTTTTTCATATCAATACCATCCTTTCCTTGTTGACTCATCATTCATGCTCAACATGAACACTGCTTCTCCTCCTCCTCCACCTTCACAGTTTCACCCTCTTCATCAAGATATTATTAACTGTGTTGATCAACAAAGCTCCAAAGTTACTACCATAACTGAGAATGAACCTTCTTCTTTCACCAAAAACCTTAGTCCACAGTCTTCCATGGTTCTGGACAAGCTTGAAAATGGTGATGAGCAAGTTACTCAGAAAAATAGTCCTACGGAGAAGAAGAGGAGAACCAGAAACAATACTAACCCTCACTCTCATGATAATGCAGCAGAAGGGAAAAACAAGAAACTGAAGAAAAACAAAGAAGATGAGAAGGCAAAAGCAGAGAAAAAAGATCAGAGAAAGTGTTTGGATGAGCCCCCAACTGGCTATATCCACGTCCGAGCAAGAAGGGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAGCAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCTCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTAGAGTTCTTGTCAATGAAACTTACTTCTGTGAATCCTATGTTCTATGACATGGCAACAGACCTAGACACTCTTTTGGTTAGACAAGAGAAATTAAATAACTTGGCATCACCATCAACATTATCATCTGTGTCACATTGCAATAGTCCTAAACAAGGCACAACTTTTGCTGATACAACAACCATGACTCCAACCAACATCTTCCAAGCTGCTAATGACTACCTTTTGGATACTTCAGCTTCAATTTTTCTACAAGGGCAAAGGTCATCAAATGTTGTCTCTGAGGATTTTTAG

Protein sequence

>MsaT016709.1

MAAFSYQYHPFLVDSSFMLNMNTASPPPPPSQFHPLHQDIINCVDQQSSKVTTITENEPSSFTKNLSPQSSMVLDKLENGDEQVTQKNSPTEKKRRTRNNTNPHSHDNAAEGKNKKLKKNKEDEKAKAEKKDQRKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTLLVRQEKLNNLASPSTLSSVSHCNSPKQGTTFADTTTMTPTNIFQAANDYLLDTSASIFLQGQRSSNVVSEDF*