AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG016718

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016718 MtrunA17_Chr3g0131911 93.776 241 15 0 1 241 1 241 1.13e-148 414
MsaG016718 MtrunA17_Chr8g0385991 69.903 206 49 3 1 206 1 193 4.53e-102 295
MsaG016718 MtrunA17_Chr7g0214071 62.011 179 56 5 1 178 1 168 3.56e-72 221
MsaG016718 MtrunA17_Chr7g0252971 48.810 168 77 3 12 172 6 171 2.91e-52 172
MsaG016718 MtrunA17_Chr2g0318101 49.711 173 75 4 14 176 15 185 1.55e-50 168
MsaG016718 MtrunA17_Chr4g0042561 49.693 163 74 3 12 172 7 163 3.44e-50 165
MsaG016718 MtrunA17_Chr3g0124761 47.802 182 81 5 13 192 6 175 3.95e-50 165
MsaG016718 MtrunA17_Chr5g0417791 50.000 160 72 3 14 171 3 156 1.89e-49 162
MsaG016718 MtrunA17_Chr8g0384721 48.780 164 75 3 10 171 3 159 4.73e-49 162
MsaG016718 MtrunA17_Chr4g0047841 46.667 180 75 3 13 173 14 191 5.98e-49 164
MsaG016718 MtrunA17_Chr2g0326361 50.877 171 71 5 14 182 14 173 1.04e-48 162
MsaG016718 MtrunA17_Chr7g0263931 48.125 160 77 3 13 170 10 165 3.44e-48 161
MsaG016718 MtrunA17_Chr8g0359921 48.171 164 73 4 14 174 14 168 4.43e-46 156
MsaG016718 MtrunA17_Chr2g0318081 48.148 162 72 3 14 173 16 167 8.47e-46 156
MsaG016718 MtrunA17_Chr3g0130731 46.341 164 78 3 10 171 3 158 2.03e-45 153
MsaG016718 MtrunA17_Chr5g0398971 46.471 170 72 5 9 171 2 159 6.53e-44 151
MsaG016718 MtrunA17_Chr4g0056541 43.931 173 80 4 9 176 2 162 9.89e-44 150
MsaG016718 MtrunA17_Chr2g0311651 39.336 211 102 4 6 190 13 223 1.11e-43 149
MsaG016718 MtrunA17_Chr8g0372121 45.455 165 73 3 14 173 6 158 1.46e-43 149
MsaG016718 MtrunA17_Chr4g0018391 46.429 168 73 5 9 171 2 157 1.75e-43 150
MsaG016718 MtrunA17_Chr5g0442771 46.875 160 79 3 16 170 20 178 5.59e-43 147
MsaG016718 MtrunA17_Chr5g0405211 46.988 166 71 4 14 174 8 161 1.92e-42 147
MsaG016718 MtrunA17_Chr8g0346001 44.186 172 82 4 9 171 10 176 3.07e-42 148
MsaG016718 MtrunA17_Chr3g0109821 47.531 162 70 4 14 170 6 157 3.10e-42 152
MsaG016718 MtrunA17_Chr2g0309331 43.529 170 80 5 10 174 6 164 5.34e-42 145
MsaG016718 MtrunA17_Chr4g0060931 41.341 179 93 5 14 188 17 187 6.30e-42 146
MsaG016718 MtrunA17_Chr5g0433781 45.342 161 74 3 14 170 6 156 7.33e-42 150
MsaG016718 MtrunA17_Chr5g0428991 44.379 169 80 3 11 175 22 180 1.03e-41 150
MsaG016718 MtrunA17_Chr3g0091921 44.444 162 80 4 14 173 16 169 1.33e-41 144
MsaG016718 MtrunA17_Chr2g0311661 37.915 211 110 5 16 205 23 233 1.48e-41 143
MsaG016718 MtrunA17_Chr6g0484441 42.767 159 77 3 14 170 5 151 2.50e-41 144
MsaG016718 MtrunA17_Chr8g0361731 41.436 181 99 3 1 176 1 179 2.59e-41 145
MsaG016718 MtrunA17_Chr3g0139331 43.210 162 80 3 14 173 11 162 3.25e-41 144
MsaG016718 MtrunA17_Chr1g0200561 44.444 171 78 4 14 179 19 177 3.29e-41 144
MsaG016718 MtrunA17_Chr6g0453131 41.808 177 95 3 2 173 3 176 3.69e-41 144
MsaG016718 MtrunA17_Chr3g0128151 43.275 171 83 3 11 177 19 179 6.43e-41 147
MsaG016718 MtrunA17_Chr5g0417001 39.896 193 101 4 16 195 16 206 9.60e-41 144
MsaG016718 MtrunA17_Chr3g0128111 41.818 165 82 3 17 177 45 199 2.59e-40 139
MsaG016718 MtrunA17_Chr6g0481091 37.688 199 101 4 14 199 6 194 3.88e-40 138
MsaG016718 MtrunA17_Chr5g0400461 43.452 168 79 4 10 170 2 160 6.29e-40 140
MsaG016718 MtrunA17_Chr1g0147421 38.806 201 97 6 14 202 27 213 8.50e-40 140
MsaG016718 MtrunA17_Chr6g0453451 43.558 163 76 4 13 170 19 170 9.92e-40 139
MsaG016718 MtrunA17_Chr4g0017921 44.172 163 73 4 14 171 8 157 1.26e-39 140
MsaG016718 MtrunA17_Chr7g0253011 40.223 179 96 5 14 186 17 190 7.98e-39 138
MsaG016718 MtrunA17_Chr2g0316971 42.236 161 85 4 12 170 21 175 8.72e-39 138
MsaG016718 MtrunA17_Chr2g0309891 42.857 161 79 3 14 170 6 157 1.53e-38 137
MsaG016718 MtrunA17_Chr1g0183741 42.683 164 80 4 12 173 8 159 1.62e-38 135
MsaG016718 MtrunA17_Chr4g0054791 44.720 161 78 4 14 170 6 159 3.35e-38 135
MsaG016718 MtrunA17_Chr3g0130101 41.875 160 79 3 16 171 9 158 2.78e-37 134
MsaG016718 MtrunA17_Chr6g0461661 40.964 166 88 5 14 177 18 175 5.82e-37 133
MsaG016718 MtrunA17_Chr4g0076731 42.945 163 78 4 16 176 56 205 6.43e-37 134
MsaG016718 MtrunA17_Chr7g0261411 43.396 159 76 4 12 168 8 154 2.63e-36 129
MsaG016718 MtrunA17_Chr2g0312321 39.877 163 85 5 12 172 9 160 1.47e-35 128
MsaG016718 MtrunA17_Chr4g0038751 44.755 143 74 3 1 141 4 143 2.07e-35 127
MsaG016718 MtrunA17_Chr8g0364791 39.157 166 87 3 10 171 2 157 4.62e-35 129
MsaG016718 MtrunA17_Chr1g0201021 42.138 159 78 3 16 170 21 169 7.83e-35 130
MsaG016718 MtrunA17_Chr3g0144271 47.368 133 65 3 14 143 23 153 1.43e-34 128
MsaG016718 MtrunA17_Chr8g0384201 39.157 166 87 3 10 171 2 157 1.54e-34 129
MsaG016718 MtrunA17_Chr7g0217721 37.640 178 92 4 7 171 12 183 2.37e-34 126
MsaG016718 MtrunA17_Chr8g0345691 39.877 163 79 5 11 168 9 157 8.80e-34 125
MsaG016718 MtrunA17_Chr1g0197351 43.478 161 83 2 14 170 42 198 9.28e-34 126
MsaG016718 MtrunA17_Chr1g0197361 41.566 166 75 7 16 173 10 161 1.08e-33 127
MsaG016718 MtrunA17_Chr7g0217711 41.096 146 80 2 7 150 12 153 3.03e-33 118
MsaG016718 MtrunA17_Chr8g0345671 41.509 159 74 6 14 167 11 155 3.40e-33 124
MsaG016718 MtrunA17_Chr4g0050701 35.802 162 94 3 14 174 11 163 5.87e-32 115
MsaG016718 MtrunA17_Chr3g0092671 40.361 166 77 6 16 173 7 158 1.58e-31 121
MsaG016718 MtrunA17_Chr2g0321631 38.650 163 86 4 15 169 5 161 1.13e-28 108
MsaG016718 MtrunA17_Chr4g0026141 39.759 166 81 6 14 169 5 161 1.41e-28 108
MsaG016718 MtrunA17_Chr7g0243371 52.688 93 37 2 49 141 6 91 8.83e-26 97.4
MsaG016718 MtrunA17_Chr7g0266701 33.728 169 96 6 14 172 4 166 2.51e-25 100
MsaG016718 MtrunA17_Chr8g0345721 33.939 165 72 4 17 147 38 199 2.52e-25 99.0
MsaG016718 MtrunA17_Chr8g0345741 40.496 121 64 4 25 140 2 119 1.04e-24 95.9
MsaG016718 MtrunA17_Chr3g0113001 46.296 108 51 2 64 171 17 117 2.75e-24 98.2
MsaG016718 MtrunA17_Chr8g0384351 35.185 162 73 7 13 172 9 140 3.71e-24 95.1
MsaG016718 MtrunA17_Chr8g0345731 36.567 134 76 4 14 140 24 155 5.21e-24 94.7
MsaG016718 MtrunA17_Chr8g0345711 35.821 134 78 4 14 142 12 142 8.39e-24 94.0
MsaG016718 MtrunA17_Chr2g0321741 39.815 108 58 2 35 139 13 116 9.58e-24 97.8
MsaG016718 MtrunA17_Chr3g0113031 45.263 95 46 3 77 171 5 93 8.13e-21 88.6
MsaG016718 MtrunA17_Chr8g0345701 33.108 148 75 6 12 140 5 147 8.71e-21 86.3
MsaG016718 MtrunA17_Chr3g0130321 31.902 163 95 6 13 168 6 159 1.27e-19 84.0
MsaG016718 MtrunA17_Chr7g0274971 30.851 188 100 10 20 197 11 178 1.18e-13 67.8
MsaG016718 MtrunA17_Chr7g0251651 29.771 131 82 4 13 139 17 141 1.34e-12 64.7
MsaG016718 MtrunA17_Chr7g0251661 29.197 137 87 4 7 139 3 133 5.83e-12 62.0
MsaG016718 MtrunA17_Chr7g0251671 29.861 144 87 6 7 144 3 138 1.38e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016718 AT5G13180.1 51.101 227 70 5 1 203 1 210 2.70e-68 211
MsaG016718 AT2G33480.1 57.714 175 62 5 1 174 1 164 1.93e-64 202
MsaG016718 AT2G33480.2 56.571 175 62 4 1 174 1 162 5.00e-64 201
MsaG016718 AT3G04070.2 49.432 176 77 4 8 175 4 175 3.24e-54 177
MsaG016718 AT1G01720.1 39.381 226 124 5 13 236 6 220 2.81e-51 169
MsaG016718 AT3G04070.1 45.745 188 82 4 8 175 4 191 1.48e-50 169
MsaG016718 AT1G77450.1 46.032 189 85 5 6 185 1 181 2.03e-50 165
MsaG016718 AT1G61110.1 48.333 180 72 4 7 173 9 180 1.80e-49 165
MsaG016718 AT1G69490.1 48.765 162 75 3 12 171 7 162 4.21e-49 162
MsaG016718 AT3G15510.1 47.305 167 79 3 18 177 21 185 3.53e-47 160
MsaG016718 AT4G27410.2 46.541 159 73 3 14 170 14 162 2.71e-46 156
MsaG016718 AT5G08790.1 48.750 160 74 3 14 171 7 160 2.72e-46 155
MsaG016718 AT5G39610.1 45.930 172 79 5 14 181 20 181 4.31e-46 155
MsaG016718 AT4G17980.1 46.061 165 79 3 10 170 2 160 2.78e-45 152
MsaG016718 AT1G52890.1 47.531 162 73 3 14 173 14 165 2.82e-45 154
MsaG016718 AT1G12260.2 45.349 172 77 4 9 175 2 161 7.17e-45 154
MsaG016718 AT3G15500.1 44.199 181 85 4 14 192 14 180 7.53e-45 153
MsaG016718 AT4G17980.2 46.061 165 79 3 10 170 2 160 8.75e-45 152
MsaG016718 AT1G52880.1 48.750 160 78 2 18 173 21 180 1.76e-44 152
MsaG016718 AT5G46590.1 45.000 180 79 4 10 185 2 165 1.91e-44 151
MsaG016718 AT1G12260.1 45.349 172 77 4 9 175 2 161 2.47e-44 153
MsaG016718 AT5G63790.1 46.875 160 77 3 14 171 50 203 4.19e-44 150
MsaG016718 AT5G63790.2 46.875 160 77 3 14 171 60 213 5.27e-44 150
MsaG016718 AT4G27410.3 43.182 176 71 4 14 170 14 179 8.00e-44 150
MsaG016718 AT1G62700.1 46.429 168 73 4 9 171 2 157 1.15e-43 152
MsaG016718 AT1G62700.2 46.429 168 73 4 9 171 2 157 1.15e-43 152
MsaG016718 AT5G39820.1 44.767 172 76 4 16 170 22 191 1.51e-43 150
MsaG016718 AT5G07680.2 44.578 166 82 4 14 177 3 160 1.90e-43 149
MsaG016718 AT1G33060.1 46.584 161 72 3 14 170 24 174 1.98e-43 155
MsaG016718 AT5G07680.1 44.578 166 82 4 14 177 17 174 2.23e-43 149
MsaG016718 AT1G33060.2 46.584 161 72 3 14 170 24 174 2.41e-43 155
MsaG016718 AT5G61430.1 44.578 166 82 4 14 177 16 173 3.42e-43 149
MsaG016718 AT5G66300.1 40.444 225 111 8 14 231 12 220 3.71e-43 148
MsaG016718 AT1G65910.1 47.205 161 71 3 14 170 6 156 4.75e-43 154
MsaG016718 AT5G62380.2 42.353 170 81 3 11 175 4 161 7.16e-43 148
MsaG016718 AT5G62380.1 42.353 170 81 3 11 175 4 161 7.16e-43 148
MsaG016718 AT4G36160.1 46.626 163 70 4 14 171 10 160 1.02e-42 149
MsaG016718 AT4G36160.3 46.626 163 70 4 14 171 10 160 1.02e-42 149
MsaG016718 AT4G36160.2 46.626 163 70 4 14 171 14 164 1.06e-42 149
MsaG016718 AT5G46590.2 48.052 154 71 3 10 159 2 150 1.60e-42 145
MsaG016718 AT3G10490.1 45.062 162 74 4 14 170 27 178 3.65e-42 144
MsaG016718 AT3G10480.2 45.342 161 74 3 14 170 27 177 4.60e-42 149
MsaG016718 AT1G79580.3 45.509 167 74 5 10 171 13 167 4.74e-42 147
MsaG016718 AT1G79580.5 45.509 167 74 5 10 171 13 167 4.74e-42 147
MsaG016718 AT1G79580.4 45.509 167 74 5 10 171 13 167 4.74e-42 147
MsaG016718 AT1G79580.2 45.509 167 74 5 10 171 13 167 4.74e-42 147
MsaG016718 AT1G79580.1 45.509 167 74 5 10 171 13 167 4.74e-42 147
MsaG016718 AT2G18060.3 46.012 163 71 4 14 171 9 159 5.23e-42 147
MsaG016718 AT2G18060.1 46.012 163 71 4 14 171 9 159 5.23e-42 147
MsaG016718 AT4G35580.3 44.643 168 75 4 14 175 9 164 5.61e-42 150
MsaG016718 AT4G35580.2 44.643 168 75 4 14 175 9 164 6.04e-42 150
MsaG016718 AT2G46770.1 43.182 176 82 5 9 171 11 181 6.06e-42 146
MsaG016718 AT4G35580.1 46.012 163 70 4 14 170 9 159 6.17e-42 149
MsaG016718 AT3G04060.1 42.286 175 80 4 11 177 17 178 6.74e-42 145
MsaG016718 AT3G03200.1 45.963 161 74 5 14 170 6 157 2.19e-41 147
MsaG016718 AT1G33280.1 44.172 163 73 3 14 171 8 157 2.95e-41 143
MsaG016718 AT5G17260.1 45.679 162 73 4 14 170 6 157 3.37e-41 147
MsaG016718 AT3G10480.1 45.679 162 73 4 14 170 27 178 3.51e-41 146
MsaG016718 AT1G32770.1 42.222 180 87 5 3 171 5 178 3.55e-41 144
MsaG016718 AT1G71930.2 44.253 174 79 5 12 179 7 168 4.78e-41 143
MsaG016718 AT1G71930.1 44.253 174 79 5 12 179 7 168 4.78e-41 143
MsaG016718 AT4G10350.1 43.558 163 77 3 14 171 9 161 7.93e-41 143
MsaG016718 AT3G61910.1 41.111 180 88 5 4 170 1 175 9.35e-41 142
MsaG016718 AT3G10490.2 45.062 162 74 4 14 170 27 178 1.38e-40 145
MsaG016718 AT3G18400.1 44.025 159 76 4 14 170 5 152 3.55e-40 140
MsaG016718 AT1G32510.1 44.186 172 84 3 12 176 4 170 3.88e-40 140
MsaG016718 AT3G17730.1 44.099 161 76 4 14 170 6 156 4.93e-40 138
MsaG016718 AT3G29035.1 49.231 130 60 2 14 141 24 149 8.55e-40 140
MsaG016718 AT1G76420.1 41.520 171 85 4 14 180 22 181 9.05e-40 140
MsaG016718 AT2G24430.2 41.358 162 84 3 14 173 16 168 9.58e-40 139
MsaG016718 AT2G24430.1 41.358 162 84 3 14 173 16 168 9.58e-40 139
MsaG016718 AT1G26870.1 45.062 162 82 3 14 170 16 175 1.39e-39 141
MsaG016718 AT2G43000.1 47.134 157 72 5 16 170 20 167 2.02e-39 137
MsaG016718 AT5G18270.1 42.012 169 89 4 4 170 11 172 4.88e-39 138
MsaG016718 AT5G18270.2 42.012 169 89 4 4 170 11 172 5.20e-39 138
MsaG016718 AT5G24590.2 35.652 230 133 5 11 235 10 229 8.44e-39 140
MsaG016718 AT1G54330.1 40.476 168 80 4 14 177 6 157 2.50e-38 135
MsaG016718 AT5G53950.1 42.767 159 83 4 14 170 17 169 4.21e-38 137
MsaG016718 AT2G17040.1 41.875 160 79 4 16 173 8 155 7.88e-38 133
MsaG016718 AT3G12977.1 38.150 173 94 4 14 183 18 180 1.60e-37 133
MsaG016718 AT2G02450.1 42.945 163 78 5 16 176 53 202 1.97e-37 135
MsaG016718 AT2G02450.2 42.945 163 78 5 16 176 53 202 2.94e-37 135
MsaG016718 AT3G10500.1 42.442 172 81 4 8 173 3 162 5.14e-37 136
MsaG016718 AT3G15170.1 38.323 167 83 4 12 170 18 172 7.70e-37 132
MsaG016718 AT1G56010.2 38.690 168 91 5 12 175 17 176 3.15e-36 130
MsaG016718 AT3G10480.3 38.974 195 71 5 14 170 27 211 3.31e-36 134
MsaG016718 AT3G49530.2 38.889 162 86 3 14 171 13 165 1.27e-35 130
MsaG016718 AT3G12910.1 42.073 164 85 4 16 170 23 185 1.45e-35 128
MsaG016718 AT3G49530.1 38.889 162 86 3 14 171 13 165 3.13e-35 130
MsaG016718 AT1G34190.1 41.509 159 79 3 16 170 18 166 7.66e-35 130
MsaG016718 AT5G04410.1 39.521 167 87 3 8 170 3 159 2.05e-34 129
MsaG016718 AT1G34180.3 40.881 159 80 3 16 170 18 166 8.30e-34 126
MsaG016718 AT2G33480.3 52.586 116 44 4 59 174 3 107 1.28e-33 120
MsaG016718 AT1G34180.1 43.750 144 73 2 16 155 18 157 2.32e-33 127
MsaG016718 AT4G28530.1 40.217 184 80 6 7 172 3 174 6.04e-33 122
MsaG016718 AT1G34180.4 38.596 171 79 3 16 170 18 178 7.35e-33 124
MsaG016718 AT5G09330.5 41.212 165 83 3 10 170 2 156 1.59e-32 124
MsaG016718 AT5G09330.2 41.212 165 83 3 10 170 2 156 1.59e-32 124
MsaG016718 AT5G09330.4 41.212 165 83 3 10 170 2 156 1.59e-32 124
MsaG016718 AT5G09330.3 41.212 165 83 3 10 170 2 156 1.59e-32 124
MsaG016718 AT5G09330.1 41.212 165 83 3 10 170 2 156 1.59e-32 124
MsaG016718 AT1G34180.2 41.026 156 72 2 16 155 18 169 1.95e-32 124
MsaG016718 AT5G64060.1 38.182 165 88 3 10 170 2 156 1.78e-31 119
MsaG016718 AT5G04395.1 39.583 144 71 2 14 142 28 170 2.20e-30 112
MsaG016718 AT3G44290.2 36.301 146 86 2 7 149 7 148 2.90e-30 112
MsaG016718 AT5G50820.1 36.364 176 101 5 5 177 7 174 8.87e-30 110
MsaG016718 AT2G27300.1 40.602 133 72 2 10 139 10 138 9.12e-30 114
MsaG016718 AT3G44290.1 28.968 252 140 6 7 240 7 237 9.71e-30 114
MsaG016718 AT5G22290.1 39.370 127 70 2 16 139 23 145 9.62e-29 111
MsaG016718 AT4G01520.1 43.796 137 68 5 15 144 5 139 1.17e-26 105
MsaG016718 AT4G01550.1 40.881 159 77 5 17 170 7 153 1.99e-26 106
MsaG016718 AT1G32870.2 40.113 177 88 6 7 178 5 168 2.38e-26 107
MsaG016718 AT1G32870.3 40.113 177 88 6 7 178 41 204 2.92e-26 107
MsaG016718 AT1G32870.1 40.113 177 88 6 7 178 5 168 2.94e-26 106
MsaG016718 AT5G64530.1 35.465 172 89 5 14 176 3 161 3.65e-26 100
MsaG016718 AT4G01540.2 43.704 135 67 5 17 144 7 139 3.91e-26 105
MsaG016718 AT4G01540.4 43.704 135 67 5 17 144 7 139 4.59e-26 105
MsaG016718 AT4G01540.1 43.704 135 67 5 17 144 7 139 5.96e-26 105
MsaG016718 AT4G01540.3 43.704 135 67 5 17 144 7 139 7.99e-26 104
MsaG016718 AT5G64530.2 41.860 129 61 4 14 141 3 118 2.39e-25 97.8
MsaG016718 AT5G61430.2 43.860 114 56 3 64 177 5 110 6.06e-25 99.8
MsaG016718 AT3G12977.2 41.379 116 57 3 63 177 16 121 2.21e-24 97.4
MsaG016718 AT4G10350.2 43.243 111 53 2 61 171 14 114 3.63e-24 98.2
MsaG016718 AT1G02230.1 39.456 147 76 5 15 155 4 143 5.23e-24 99.0
MsaG016718 AT3G44350.2 35.758 165 91 5 17 174 8 164 1.33e-23 95.5
MsaG016718 AT5G14000.1 30.994 171 103 3 6 174 7 164 1.66e-23 94.4
MsaG016718 AT1G56010.1 40.708 113 58 3 64 175 5 109 2.08e-23 95.5
MsaG016718 AT5G14000.2 33.562 146 91 2 7 150 8 149 4.05e-23 92.0
MsaG016718 AT5G22380.1 32.990 194 111 6 17 198 8 194 4.73e-23 94.0
MsaG016718 AT3G44350.1 36.486 148 82 4 17 157 8 150 1.91e-22 90.5
MsaG016718 AT3G10490.4 47.727 88 35 3 84 170 1 78 3.12e-20 88.6
MsaG016718 AT3G10490.3 47.727 88 35 3 84 170 1 78 3.12e-20 88.6
MsaG016718 AT1G02250.1 34.591 159 84 6 15 167 4 148 3.74e-19 85.5
MsaG016718 AT1G01010.1 38.806 134 68 5 17 139 6 136 1.72e-18 84.0
MsaG016718 AT2G43000.2 48.936 94 39 4 77 170 5 89 2.18e-18 80.9
MsaG016718 AT3G04420.2 37.681 138 70 5 15 143 4 134 3.87e-18 82.0
MsaG016718 AT3G04420.1 37.681 138 70 5 15 143 4 134 4.95e-18 82.0
MsaG016718 AT2G18060.2 45.122 82 33 2 90 171 2 71 1.79e-16 77.0
MsaG016718 AT4G28530.2 41.228 114 49 3 7 102 3 116 2.55e-16 77.0
MsaG016718 AT3G56530.1 33.333 162 87 6 14 168 52 199 4.41e-16 76.6
MsaG016718 AT1G02220.1 34.839 155 79 6 15 156 4 149 3.17e-14 71.6
MsaG016718 AT5G50820.2 31.034 116 74 2 64 177 14 125 2.60e-11 60.5
MsaG016718 AT3G55210.1 27.374 179 94 7 14 173 11 172 7.28e-11 61.2
MsaG016718 AT3G04430.1 29.851 134 78 4 20 140 6 136 9.08e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGTGCTGTTTCGATACT+TGG 0.265925 3:+101219039 None:intergenic
GAACAACCAACTCTGGTTAT+TGG 0.282547 3:-101219009 MsaT016718.1:CDS
CAAAACTATGGAAACGAGAT+AGG 0.347341 3:-101218676 MsaT016718.1:CDS
AAAAGAAGTAATATAGAAAT+CGG 0.379573 3:-101218622 MsaT016718.1:CDS
CTCATAAAATCAAAGAATCT+TGG 0.393607 3:+101218547 None:intergenic
CAATGAGTTCGAGATCCATT+TGG 0.411374 3:+101218887 None:intergenic
ATTAGTATTCATCACCGTAT+TGG 0.436278 3:+101218585 None:intergenic
AATTGAAGCAGGCAATTGAT+AGG 0.447214 3:+101219302 None:intergenic
TCTGGTTATTGGAAGGCAAC+AGG 0.467118 3:-101218998 MsaT016718.1:CDS
AGAAACTACTGCTTGCAATC+AGG 0.467745 3:-101218834 MsaT016718.1:intron
TATCAAGGAAAATCTCCAAA+TGG 0.482794 3:-101218902 MsaT016718.1:CDS
CAGTAGTTTCTAAGCTAACT+AGG 0.483639 3:+101218846 None:intergenic
ATGGAAACGAGATAGGGAAC+TGG 0.484070 3:-101218669 MsaT016718.1:CDS
CTAAGTACCTGGCAAATCCC+AGG 0.494406 3:+101219248 None:intergenic
CAAATGGATCTCGAACTCAT+TGG 0.497017 3:-101218886 MsaT016718.1:CDS
GTTTCTTCATCACTAAGTAA+TGG 0.512585 3:-101218956 MsaT016718.1:CDS
ATCTCAGGAATAATTGAAGC+AGG 0.517678 3:+101219291 None:intergenic
TGCCTTCCAATAACCAGAGT+TGG 0.519375 3:+101219003 None:intergenic
TACTTGCAGACATTGATCTC+AGG 0.525771 3:+101219276 None:intergenic
TCACTAAGTAATGGAATCGC+GGG 0.532891 3:-101218947 MsaT016718.1:CDS
TATGATCCCTGGGATTTGCC+AGG 0.534942 3:-101219255 MsaT016718.1:intron
TGGGTGCAGATGCAAAACTA+TGG 0.562905 3:-101218688 MsaT016718.1:intron
ATGTCTGCAAGTATGATCCC+TGG 0.565949 3:-101219266 MsaT016718.1:CDS
AAGACGAGCTCTTCGTCCGT+TGG 0.567604 3:+101219351 None:intergenic
GGTGTAAGCAGATTGCCTCC+TGG 0.568317 3:-101219387 MsaT016718.1:CDS
TAAGTATTTCTTCAGCAGCA+AGG 0.575313 3:-101219065 MsaT016718.1:CDS
ATGAACAGAACAACCAACTC+TGG 0.580063 3:-101219016 MsaT016718.1:CDS
TGTCTGCAAGTATGATCCCT+GGG 0.580596 3:-101219265 MsaT016718.1:CDS
AACCAACTCTGGTTATTGGA+AGG 0.581092 3:-101219005 MsaT016718.1:CDS
GAGGGTACACAACTCAGCTC+CGG 0.583774 3:-101218527 MsaT016718.1:CDS
ATCACTAAGTAATGGAATCG+CGG 0.598075 3:-101218948 MsaT016718.1:CDS
GTCTTGTTCAAGTTCGAGTG+AGG 0.604087 3:-101218476 MsaT016718.1:CDS
AAAACTATGGAAACGAGATA+GGG 0.606762 3:-101218675 MsaT016718.1:CDS
GGTGATGAATACTAATGTTG+AGG 0.614852 3:-101218578 MsaT016718.1:CDS
TAAGTACCTGGCAAATCCCA+GGG 0.629531 3:+101219249 None:intergenic
TGTGTGTAATTAGGAAATTG+TGG 0.633496 3:-101219097 MsaT016718.1:intron
TTACATGATGAAGACCAATA+CGG 0.642498 3:-101218599 MsaT016718.1:CDS
TGGAAACGAGATAGGGAACT+GGG 0.648812 3:-101218668 MsaT016718.1:CDS
TCTTCATCAGAAGAAAGATG+CGG 0.710283 3:-101218451 MsaT016718.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 101218429 101219436 101218429 ID=MsaG016718
Chr3 mRNA 101218429 101219436 101218429 ID=MsaT016718.1;Parent=MsaG016718
Chr3 exon 101218429 101218701 101218429 ID=MsaT016718.1.exon3;Parent=MsaT016718.1
Chr3 CDS 101218429 101218701 101218429 ID=cds.MsaT016718.1;Parent=MsaT016718.1
Chr3 exon 101218835 101219106 101218835 ID=MsaT016718.1.exon2;Parent=MsaT016718.1
Chr3 CDS 101218835 101219106 101218835 ID=cds.MsaT016718.1;Parent=MsaT016718.1
Chr3 exon 101219256 101219436 101219256 ID=MsaT016718.1.exon1;Parent=MsaT016718.1
Chr3 CDS 101219256 101219436 101219256 ID=cds.MsaT016718.1;Parent=MsaT016718.1
Gene Sequence

>MsaT016718.1

ATGGAAAAGCTGAATTTTGTGAAAAATGGTGTAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTCATTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGCTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAAATGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGATGCAAAACTATGGAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAATCGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTAGATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA
Protein sequence

>MsaT016718.1

MEKLNFVKNGVSRLPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYRNSTRMNRTTNSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPNGSRTHWIMHEYRLVSLETTACNQMQNYGNEIGNWVLCRIFTKKRSNIEIGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSRSSSCSSSSEVSSSEERCGDIYTDF*