AlfalfaGEDB | MsaG016818

M. sativa ssp. caerulea / MsaG016818

KEGG: -
GO: GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016818	XP_013461773.1	89.720	321	27	1	1	315	1	321	0.0	599

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016818	sp\|Q7XHI9\|BH084_ARATH	50.230	217	74	6	109	307	121	321	2.86e-55	185

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016818	tr\|A0A072V390\|A0A072V390_MEDTR	89.720	321	27	1	1	315	1	321	0.0	599

TFs/TRs:

Gene ID	Type	Classification
MsaG016818	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG016818	0.842029	6.164960e-58	2.566182e-55
MsaG000325	MsaG016818	0.833242	1.081868e-55	3.439758e-53
MsaG000638	MsaG016818	0.803691	5.204483e-49	7.654445e-47
MsaG000613	MsaG016818	0.807222	9.540033e-50	1.523804e-47
MsaG001730	MsaG016818	0.860004	5.486405e-63	4.266315e-60
MsaG001939	MsaG016818	0.807862	6.985191e-50	1.133019e-47
MsaG002043	MsaG016818	0.802044	1.135035e-48	1.607258e-46
MsaG002481	MsaG016818	0.839931	2.178255e-57	8.485101e-55
MsaG002885	MsaG016818	0.804139	4.203353e-49	6.246716e-47
MsaG003422	MsaG016818	0.830607	4.806776e-55	1.415370e-52
MsaG003470	MsaG016818	0.833304	1.044275e-55	3.326094e-53
MsaG004107	MsaG016818	0.803093	6.911227e-49	1.002532e-46
MsaG004280	MsaG016818	0.829384	9.520954e-55	2.707159e-52
MsaG004382	MsaG016818	0.811339	1.261300e-50	2.225564e-48
MsaG004500	MsaG016818	0.814552	2.511786e-51	4.800904e-49
MsaG004531	MsaG016818	0.808852	4.307183e-50	7.154738e-48
MsaG004570	MsaG016818	0.818007	4.275558e-52	8.926045e-50
MsaG004718	MsaG016818	0.819311	2.170165e-52	4.687160e-50
MsaG004887	MsaG016818	0.818774	2.871541e-52	6.115011e-50
MsaG005060	MsaG016818	0.802380	9.685348e-49	1.382126e-46
MsaG005100	MsaG016818	0.844012	1.838428e-58	8.154332e-56
MsaG005280	MsaG016818	0.801149	1.728436e-48	2.398320e-46
MsaG005526	MsaG016818	0.806699	1.229138e-49	1.939292e-47
MsaG005722	MsaG016818	0.825104	9.974757e-54	2.516361e-51
MsaG006324	MsaG016818	0.806409	1.413929e-49	2.215677e-47
MsaG006471	MsaG016818	0.837391	9.797688e-57	3.527011e-54
MsaG006635	MsaG016818	0.808791	4.437309e-50	7.359971e-48
MsaG006657	MsaG016818	0.801307	1.604885e-48	2.234858e-46
MsaG006769	MsaG016818	0.807232	9.492456e-50	1.516551e-47
MsaG007091	MsaG016818	0.813356	4.596955e-51	8.526762e-49
MsaG007630	MsaG016818	0.844224	1.614343e-58	7.211153e-56
MsaG008003	MsaG016818	0.831931	2.278698e-55	6.973311e-53
MsaG008511	MsaG016818	0.801826	1.257619e-48	1.772098e-46
MsaG009792	MsaG016818	0.802101	1.104983e-48	1.566716e-46
MsaG010637	MsaG016818	0.816397	9.806070e-52	1.963994e-49
MsaG010706	MsaG016818	0.849028	7.977513e-60	4.182780e-57
MsaG010853	MsaG016818	0.823918	1.891784e-53	4.620366e-51
MsaG011217	MsaG016818	0.863170	5.984169e-64	5.257586e-61
MsaG011300	MsaG016818	0.806272	1.510675e-49	2.359633e-47
MsaG011484	MsaG016818	0.804123	4.237094e-49	6.294434e-47
MsaG012046	MsaG016818	0.801250	1.648052e-48	2.292001e-46
MsaG012723	MsaG016818	0.801280	1.625076e-48	2.261600e-46
MsaG014292	MsaG016818	0.807995	6.547287e-50	1.065378e-47
MsaG014815	MsaG016818	0.800811	2.024723e-48	2.788135e-46
MsaG014855	MsaG016818	0.805879	1.826085e-49	2.825795e-47
MsaG016273	MsaG016818	0.815274	1.740160e-51	3.387336e-49
MsaG016492	MsaG016818	0.813849	3.585717e-51	6.733949e-49
MsaG016517	MsaG016818	0.800171	2.729861e-48	3.705090e-46
MsaG016695	MsaG016818	0.820069	1.459364e-52	3.215648e-50
MsaG016772	MsaG016818	0.809212	3.608745e-50	6.046421e-48
MsaG016818	MsaG016866	0.811757	1.024287e-50	1.825949e-48
MsaG016818	MsaG017017	0.825577	7.720383e-54	1.973137e-51
MsaG016818	MsaG016974	0.810668	1.760343e-50	3.055449e-48
MsaG016818	MsaG017219	0.830730	4.485065e-55	1.325337e-52
MsaG016818	MsaG017483	0.803237	6.457505e-49	9.398101e-47
MsaG016818	MsaG017495	0.882349	2.391229e-70	4.818236e-67
MsaG016818	MsaG017827	0.803311	6.232658e-49	9.086444e-47
MsaG016818	MsaG018054	0.821909	5.530027e-53	1.279325e-50
MsaG016818	MsaG018598	0.829726	7.865396e-55	2.258531e-52
MsaG016818	MsaG019160	0.818284	3.703465e-52	7.786668e-50
MsaG016818	MsaG019183	0.837270	1.051780e-56	3.772061e-54
MsaG016818	MsaG019203	0.807791	7.234259e-50	1.171381e-47
MsaG016818	MsaG019237	0.861213	2.370139e-63	1.929866e-60
MsaG016818	MsaG019466	0.858421	1.628410e-62	1.192884e-59
MsaG016818	MsaG019559	0.826741	4.091816e-54	1.080228e-51
MsaG016818	MsaG019567	0.801102	1.766727e-48	2.448847e-46
MsaG016818	MsaG019649	0.803861	4.800476e-49	7.088015e-47
MsaG016818	MsaG019672	0.835340	3.239227e-56	1.096102e-53
MsaG016818	MsaG019720	0.811076	1.437225e-50	2.519723e-48
MsaG016818	MsaG019890	0.815145	1.858428e-51	3.605603e-49
MsaG016818	MsaG019944	0.812303	7.798434e-51	1.409005e-48
MsaG016818	MsaG020026	0.800161	2.742712e-48	3.721719e-46
MsaG016818	MsaG020119	0.808946	4.113224e-50	6.847954e-48
MsaG016818	MsaG020591	0.869994	4.147435e-66	4.805554e-63
MsaG016818	MsaG020834	0.823137	2.874513e-53	6.873609e-51
MsaG016818	MsaG020972	0.844465	1.391320e-58	6.263763e-56
MsaG016818	MsaG020992	0.814734	2.289863e-51	4.396909e-49
MsaG016818	MsaG022576	0.800890	1.951367e-48	2.691846e-46
MsaG016818	MsaG022652	0.816650	8.608072e-52	1.735236e-49
MsaG016818	MsaG022899	0.801779	1.285642e-48	1.809600e-46
MsaG016818	MsaG023047	0.812335	7.674695e-51	1.387774e-48
MsaG016818	MsaG023003	0.814255	2.920524e-51	5.540712e-49
MsaG016818	MsaG023117	0.825055	1.024202e-53	2.580345e-51
MsaG016818	MsaG023298	0.800391	2.463939e-48	3.360939e-46
MsaG016818	MsaG024134	0.813001	5.494813e-51	1.010239e-48
MsaG016818	MsaG024295	0.834921	4.127027e-56	1.379149e-53
MsaG016818	MsaG024480	0.803753	5.052482e-49	7.441563e-47
MsaG016818	MsaG025641	0.837846	7.501271e-57	2.738076e-54
MsaG016818	MsaG025642	0.826397	4.938984e-54	1.291440e-51
MsaG016818	MsaG026754	0.801964	1.178549e-48	1.665865e-46
MsaG016818	MsaG027376	0.804028	4.432700e-49	6.570757e-47
MsaG016818	MsaG027511	0.810949	1.530722e-50	2.675272e-48
MsaG016818	MsaG027557	0.811789	1.008139e-50	1.798586e-48
MsaG016818	MsaG027572	0.816146	1.114779e-51	2.218586e-49
MsaG016818	MsaG027828	0.810588	1.830730e-50	3.171530e-48
MsaG016818	MsaG027845	0.815105	1.896414e-51	3.675625e-49
MsaG016818	MsaG027918	0.813957	3.393988e-51	6.391251e-49
MsaG016818	MsaG027988	0.802888	7.617758e-49	1.099769e-46
MsaG016818	MsaG028277	0.810611	1.810727e-50	3.138581e-48
MsaG016818	MsaG028324	0.813122	5.170558e-51	9.534942e-49
MsaG016818	MsaG028420	0.833222	1.094576e-55	3.478092e-53
MsaG016818	MsaG028661	0.842427	4.843405e-58	2.041951e-55
MsaG016818	MsaG028679	0.804678	3.249513e-49	4.889787e-47
MsaG016818	MsaG029053	0.812034	8.919005e-51	1.600834e-48
MsaG016818	MsaG029063	0.828802	1.315218e-54	3.678412e-52
MsaG016818	MsaG029091	0.810653	1.773034e-50	3.076427e-48
MsaG016818	MsaG029147	0.813321	4.678578e-51	8.670511e-49
MsaG016818	MsaG029171	0.832420	1.727159e-55	5.360686e-53
MsaG016818	MsaG029307	0.835005	3.932139e-56	1.317356e-53
MsaG016818	MsaG029464	0.811988	9.126337e-51	1.636204e-48
MsaG016818	MsaG029546	0.814205	2.994532e-51	5.674143e-49
MsaG016818	MsaG029618	0.837523	9.068763e-57	3.277934e-54
MsaG016818	MsaG030590	0.807570	8.052247e-50	1.296916e-47
MsaG016818	MsaG030979	0.821031	8.798811e-53	1.988795e-50
MsaG016818	MsaG032279	0.805033	2.741646e-49	4.159821e-47
MsaG016818	MsaG032373	0.821687	6.220109e-53	1.430509e-50
MsaG016818	MsaG032915	0.822438	4.173641e-53	9.793453e-51
MsaG016818	MsaG033231	0.815015	1.986054e-51	3.840659e-49
MsaG016818	MsaG033781	0.810239	2.175888e-50	3.737565e-48
MsaG016818	MsaG034217	0.826127	5.723855e-54	1.485490e-51
MsaG016818	MsaG034246	0.825071	1.015591e-53	2.559769e-51
MsaG016818	MsaG034590	0.803081	6.952533e-49	1.008219e-46
MsaG016818	MsaG036950	0.839306	3.160433e-57	1.207147e-54
MsaG016818	MsaG039589	0.828292	1.744395e-54	4.809384e-52
MsaG016818	MsaG039781	0.810863	1.597694e-50	2.786412e-48
MsaG016818	MsaG040600	0.838791	4.292120e-57	1.613399e-54
MsaG016818	MsaG040728	0.820191	1.369420e-52	3.027250e-50
MsaG016818	MsaG041072	0.833085	1.183003e-55	3.743929e-53
MsaG016818	MsaG041299	0.832729	1.449015e-55	4.538230e-53
MsaG016818	MsaG041717	0.807716	7.501200e-50	1.212437e-47
MsaG016818	MsaG042395	0.807752	7.371969e-50	1.192552e-47
MsaG016818	MsaG043695	0.812058	8.813728e-51	1.582823e-48
MsaG016818	MsaG043721	0.864421	2.453534e-64	2.265146e-61
MsaG016818	MsaG043754	0.800974	1.876060e-48	2.592876e-46
MsaG016818	MsaG044107	0.830152	6.200031e-55	1.802178e-52
MsaG016818	MsaG044200	0.805187	2.546898e-49	3.878139e-47
MsaG016818	MsaG044546	0.800615	2.219097e-48	3.042388e-46
MsaG016818	MsaG044722	0.874714	1.125980e-67	1.598964e-64
MsaG016818	MsaG044864	0.811036	1.466693e-50	2.568810e-48
MsaG016818	MsaG044916	0.812464	7.194326e-51	1.305124e-48
MsaG016818	MsaG045284	0.831062	3.721248e-55	1.110226e-52
MsaG016818	MsaG045331	0.819367	2.108039e-52	4.559697e-50
MsaG016818	MsaG045387	0.852164	1.058070e-60	6.181896e-58
MsaG016818	MsaG045819	0.804254	3.980078e-49	5.930633e-47
MsaG016818	MsaG045986	0.849101	7.614498e-60	4.002604e-57
MsaG016818	MsaG046022	0.818993	2.562127e-52	5.487587e-50
MsaG016818	MsaG046078	0.822428	4.196598e-53	9.844516e-51
MsaG016818	MsaG046123	0.827057	3.441342e-54	9.165039e-52
MsaG016818	MsaG046167	0.816670	8.522160e-52	1.718795e-49
MsaG016818	MsaG046306	0.815547	1.514416e-51	2.968273e-49
MsaG016818	MsaG046376	0.823591	2.254014e-53	5.456773e-51
MsaG016818	MsaG046540	0.817114	6.780116e-52	1.383293e-49
MsaG016818	MsaG046497	0.803719	5.134316e-49	7.556295e-47
MsaG016818	MsaG046503	0.857177	3.793118e-62	2.652656e-59
MsaG016818	MsaG046603	0.803594	5.449454e-49	7.996645e-47
MsaG016818	MsaG046660	0.830864	4.160088e-55	1.234129e-52
MsaG016818	MsaG046745	0.817565	5.372811e-52	1.108947e-49
MsaG016818	MsaG046972	0.839376	3.031860e-57	1.160565e-54
MsaG016818	MsaG001966	0.802449	9.374933e-49	1.339946e-46
MsaG016818	MsaG002000	0.851630	1.497225e-60	8.584283e-58
MsaG016818	MsaG001807	0.855845	9.297687e-62	6.192803e-59
MsaG016818	MsaG000634	0.840014	2.073097e-57	8.096700e-55
MsaG016818	MsaG001893	0.825350	8.732313e-54	2.217867e-51
MsaG016818	MsaG010554	0.801857	1.239084e-48	1.747214e-46
MsaG016818	MsaG014278	0.805226	2.500060e-49	3.810165e-47
MsaG016818	MsaG013546	0.827963	2.092098e-54	5.715136e-52
MsaG016818	MsaG014164	0.821922	5.492502e-53	1.271084e-50
MsaG016818	MsaG011821	0.822570	3.889678e-53	9.159750e-51
MsaG016818	MsaG017938	0.806681	1.239693e-49	1.955120e-47
MsaG016818	MsaG018696	0.814515	2.559023e-51	4.886689e-49
MsaG016818	MsaG028537	0.800486	2.356812e-48	3.221713e-46
MsaG016818	MsaG028782	0.803366	6.072583e-49	8.864282e-47
MsaG016818	MsaG027201	0.800681	2.151197e-48	2.953753e-46
MsaG016818	MsaG028079	0.827592	2.565297e-54	6.935458e-52
MsaG016818	MsaG031186	0.823572	2.277103e-53	5.509720e-51
MsaG016818	MsaG032757	0.857963	2.225415e-62	1.602582e-59
MsaG016818	MsaG030607	0.838508	5.075821e-57	1.891144e-54
MsaG016818	MsaG031599	0.815882	1.275849e-51	2.522069e-49
MsaG016818	MsaG031847	0.852080	1.117863e-60	6.512265e-58
MsaG016818	MsaG033778	0.809427	3.247896e-50	5.470365e-48
MsaG016818	MsaG039696	0.874658	1.175518e-67	1.665469e-64
MsaG016818	MsaG039788	0.819503	1.963257e-52	4.261508e-50
MsaG016818	MsaG036661	0.804223	4.038385e-49	6.013316e-47
MsaG016818	MsaG035600	0.828097	1.942411e-54	5.326280e-52
MsaG016818	MsaG038172	0.800606	2.228561e-48	3.054728e-46
MsaG016818	MsaG037725	0.844457	1.398469e-58	6.294292e-56
MsaG016818	MsaG036685	0.806059	1.674242e-49	2.601867e-47
MsaG016818	MsaG036795	0.816478	9.402952e-52	1.887167e-49
MsaG016818	MsaG036758	0.821402	7.231896e-53	1.650661e-50
MsaG016818	MsaG041442	0.810599	1.820711e-50	3.155033e-48
MsaG016818	MsaG044977	0.838415	5.361247e-57	1.991679e-54
MsaG016818	MsaG044531	0.810262	2.152082e-50	3.698644e-48
MsaG016818	MsaG042876	0.804701	3.213933e-49	4.838781e-47
MsaG016818	MsaG043116	0.820174	1.381561e-52	3.052741e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016818	MtrunA17_Chr3g0134741	89.720	321	27	1	1	315	1	321	0.0	599
MsaG016818	MtrunA17_Chr1g0152651	48.501	367	102	11	1	298	1	349	6.18e-86	262
MsaG016818	MtrunA17_Chr5g0393721	40.356	337	152	14	1	313	1	312	6.19e-56	184
MsaG016818	MtrunA17_Chr1g0207301	51.445	173	63	4	147	308	211	373	3.66e-46	160
MsaG016818	MtrunA17_Chr1g0207311	78.161	87	19	0	222	308	195	281	2.33e-43	150
MsaG016818	MtrunA17_Chr5g0435021	58.571	70	29	0	222	291	217	286	1.58e-22	95.5
MsaG016818	MtrunA17_Chr4g0074161	52.632	76	36	0	222	297	205	280	2.56e-18	84.7
MsaG016818	MtrunA17_Chr8g0384141	60.606	66	25	1	222	287	114	178	1.14e-17	81.3
MsaG016818	MtrunA17_Chr1g0190731	46.341	82	44	0	222	303	192	273	3.68e-16	78.2
MsaG016818	MtrunA17_Chr3g0134001	53.968	63	29	0	223	285	171	233	7.54e-16	76.3
MsaG016818	MtrunA17_Chr7g0243041	54.545	55	25	0	230	284	33	87	7.97e-15	70.9
MsaG016818	MtrunA17_Chr1g0153241	34.167	120	73	2	181	300	49	162	9.22e-14	70.1
MsaG016818	MtrunA17_Chr1g0193321	45.455	66	36	0	221	286	460	525	3.33e-13	70.1
MsaG016818	MtrunA17_Chr4g0014771	53.030	66	30	1	222	286	117	182	9.41e-13	65.9
MsaG016818	MtrunA17_Chr8g0363921	31.847	157	88	5	139	286	69	215	2.98e-12	65.9
MsaG016818	MtrunA17_Chr1g0182791	43.939	66	37	0	221	286	315	380	4.44e-12	66.6
MsaG016818	MtrunA17_Chr4g0032951	39.823	113	66	2	175	286	308	419	4.65e-12	66.2
MsaG016818	MtrunA17_Chr3g0095391	30.822	146	89	2	154	292	233	373	5.01e-12	66.2
MsaG016818	MtrunA17_Chr6g0484271	44.318	88	44	2	204	286	132	219	6.80e-12	64.7
MsaG016818	MtrunA17_Chr7g0234761	30.526	190	116	5	98	286	207	381	9.44e-12	65.5
MsaG016818	MtrunA17_Chr1g0174271	54.545	66	29	1	222	286	297	362	1.04e-11	65.1
MsaG016818	MtrunA17_Chr5g0402031	42.188	64	37	0	236	299	118	181	1.47e-11	64.3
MsaG016818	MtrunA17_Chr8g0339091	53.125	64	29	1	224	286	292	355	1.48e-11	65.1
MsaG016818	MtrunA17_Chr1g0152131	51.562	64	30	1	224	286	261	324	2.18e-11	64.3
MsaG016818	MtrunA17_Chr7g0270871	46.269	67	34	1	220	286	201	265	2.27e-11	63.9
MsaG016818	MtrunA17_Chr5g0415291	44.565	92	42	3	201	286	88	176	2.74e-11	62.8
MsaG016818	MtrunA17_Chr4g0035101	51.562	64	30	1	224	286	144	207	4.25e-11	63.2
MsaG016818	MtrunA17_Chr7g0231461	50.000	60	28	1	226	285	302	359	5.90e-11	63.2
MsaG016818	MtrunA17_Chr3g0131771	53.125	64	29	1	224	286	148	211	6.08e-11	62.4
MsaG016818	MtrunA17_Chr3g0144641	51.562	64	30	1	224	286	192	255	7.08e-11	62.8
MsaG016818	MtrunA17_Chr2g0329041	51.562	64	30	1	222	284	331	394	7.18e-11	62.8
MsaG016818	MtrunA17_Chr5g0421111	51.562	64	30	1	224	286	366	429	7.28e-11	62.8
MsaG016818	MtrunA17_Chr8g0365941	51.562	64	30	1	224	286	306	369	9.21e-11	62.4
MsaG016818	MtrunA17_Chr7g0262691	36.559	93	54	1	191	283	225	312	9.73e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016818	AT2G14760.1	50.230	217	74	6	109	307	121	321	2.91e-56	185
MsaG016818	AT4G33880.1	59.119	159	62	1	150	305	190	348	1.16e-54	182
MsaG016818	AT1G27740.1	61.486	148	40	3	162	308	121	252	3.92e-53	175
MsaG016818	AT2G14760.3	47.391	230	74	7	109	307	121	334	1.22e-52	176
MsaG016818	AT5G43175.1	57.931	145	52	3	165	308	81	217	9.80e-46	155
MsaG016818	AT5G37800.1	61.039	77	29	1	216	291	193	269	1.31e-23	99.0
MsaG016818	AT1G66470.1	52.809	89	42	0	203	291	175	263	2.34e-23	97.8
MsaG016818	AT2G24260.2	51.613	93	43	1	207	297	17	109	1.20e-21	92.4
MsaG016818	AT4G30980.1	47.573	103	47	2	189	290	101	197	3.53e-21	92.0
MsaG016818	AT4G30980.2	47.573	103	47	2	189	290	149	245	4.09e-21	92.8
MsaG016818	AT2G24260.1	51.613	93	43	1	207	297	120	212	7.04e-21	92.0
MsaG016818	AT5G58010.1	46.875	96	47	2	222	313	98	193	2.39e-19	87.0
MsaG016818	AT3G21330.1	52.381	63	30	0	223	285	269	331	2.72e-15	76.3
MsaG016818	AT5G50915.3	34.637	179	77	7	170	314	57	229	8.20e-15	73.6
MsaG016818	AT5G50915.4	34.637	179	77	7	170	314	57	229	8.20e-15	73.6
MsaG016818	AT5G50915.1	34.637	179	77	7	170	314	57	229	8.49e-15	73.9
MsaG016818	AT5G50915.2	34.637	179	77	7	170	314	57	229	8.49e-15	73.9
MsaG016818	AT5G01305.1	49.180	61	31	0	222	282	36	96	1.35e-14	70.9
MsaG016818	AT4G00120.1	50.000	54	27	0	232	285	121	174	3.36e-14	70.5
MsaG016818	AT1G25330.1	50.617	81	39	1	224	303	105	185	4.87e-13	67.8
MsaG016818	AT1G09530.3	37.895	95	53	1	201	295	321	409	6.76e-13	69.3
MsaG016818	AT1G09530.2	37.895	95	53	1	201	295	321	409	6.76e-13	69.3
MsaG016818	AT1G09530.5	37.895	95	53	1	201	295	321	409	6.76e-13	69.3
MsaG016818	AT1G09530.1	37.895	95	53	1	201	295	321	409	6.76e-13	69.3
MsaG016818	AT1G09530.4	37.895	95	53	1	201	295	321	409	6.76e-13	69.3
MsaG016818	AT1G09530.6	37.895	95	53	1	201	295	321	409	6.76e-13	69.3
MsaG016818	AT4G00050.2	39.423	104	51	3	183	286	77	168	1.06e-12	67.8
MsaG016818	AT1G51140.1	53.846	65	29	1	222	285	303	367	1.14e-12	68.6
MsaG016818	AT2G20180.7	32.031	128	69	3	196	314	185	303	1.25e-12	68.6
MsaG016818	AT2G20180.1	32.031	128	69	3	196	314	185	303	1.25e-12	68.6
MsaG016818	AT2G20180.5	32.031	128	69	3	196	314	185	303	1.25e-12	68.6
MsaG016818	AT2G20180.4	32.031	128	69	3	196	314	256	374	1.58e-12	68.2
MsaG016818	AT2G20180.6	32.031	128	69	3	196	314	256	374	1.58e-12	68.2
MsaG016818	AT2G20180.2	32.031	128	69	3	196	314	256	374	1.58e-12	68.2
MsaG016818	AT2G20180.3	32.031	128	69	3	196	314	256	374	1.58e-12	68.2
MsaG016818	AT1G18400.2	54.688	64	28	1	224	286	146	209	1.76e-12	66.6
MsaG016818	AT4G00050.3	39.423	104	51	3	183	286	179	270	2.32e-12	67.4
MsaG016818	AT1G18400.1	54.688	64	28	1	224	286	146	209	2.41e-12	66.2
MsaG016818	AT4G00050.1	39.423	104	51	3	183	286	179	270	2.42e-12	67.4
MsaG016818	AT4G09180.1	48.529	68	34	1	222	288	183	250	4.37e-12	65.9
MsaG016818	AT2G46970.2	30.645	124	80	2	195	313	165	287	4.40e-12	66.6
MsaG016818	AT2G46970.3	30.645	124	80	2	195	313	174	296	4.79e-12	66.6
MsaG016818	AT2G46970.1	30.645	124	80	2	195	313	196	318	4.95e-12	66.6
MsaG016818	AT1G35460.1	50.000	66	32	1	222	286	180	245	8.73e-12	64.7
MsaG016818	AT1G73830.2	51.562	64	30	1	224	286	148	211	1.29e-11	64.3
MsaG016818	AT4G28790.1	45.946	74	39	1	227	300	275	347	1.32e-11	65.5
MsaG016818	AT1G73830.1	51.562	64	30	1	224	286	148	211	1.33e-11	64.3
MsaG016818	AT4G28815.2	38.776	98	55	2	206	298	47	144	1.37e-11	63.9
MsaG016818	AT4G28815.1	38.776	98	55	2	206	298	123	220	1.89e-11	64.3
MsaG016818	AT2G18300.2	36.434	129	73	3	159	286	129	249	2.07e-11	64.3
MsaG016818	AT5G67110.1	40.404	99	45	3	219	315	81	167	2.20e-11	62.8
MsaG016818	AT2G18300.1	36.434	129	73	3	159	286	129	249	2.23e-11	64.3
MsaG016818	AT1G68920.3	32.237	152	101	2	136	286	216	366	2.30e-11	64.7
MsaG016818	AT2G18300.3	36.434	129	73	3	159	286	129	249	2.48e-11	64.3
MsaG016818	AT3G07340.1	53.125	64	29	1	224	286	259	322	3.02e-11	64.3
MsaG016818	AT4G36930.1	35.294	85	55	0	230	314	198	282	3.17e-11	63.9
MsaG016818	AT3G07340.2	53.125	64	29	1	224	286	259	322	3.41e-11	64.3
MsaG016818	AT1G26260.3	53.125	64	29	1	224	286	173	236	4.15e-11	63.5
MsaG016818	AT2G42280.1	52.308	65	30	1	222	285	278	342	4.19e-11	63.5
MsaG016818	AT1G26260.4	53.125	64	29	1	224	286	224	287	4.40e-11	63.5
MsaG016818	AT1G26260.1	53.125	64	29	1	224	286	224	287	4.40e-11	63.5
MsaG016818	AT1G26260.6	53.125	64	29	1	224	286	224	287	4.40e-11	63.5
MsaG016818	AT1G26260.2	53.125	64	29	1	224	286	224	287	4.40e-11	63.5
MsaG016818	AT5G48560.1	53.125	64	29	1	224	286	302	365	4.42e-11	63.9
MsaG016818	AT5G48560.2	53.125	64	29	1	224	286	302	365	4.89e-11	63.9
MsaG016818	AT1G26260.5	53.125	64	29	1	224	286	202	265	4.97e-11	63.5
MsaG016818	AT1G10120.2	51.562	64	30	1	224	286	207	270	5.17e-11	63.5
MsaG016818	AT1G10120.1	51.562	64	30	1	224	286	207	270	5.17e-11	63.5
MsaG016818	AT1G59640.1	50.000	64	31	1	224	286	137	200	5.25e-11	62.4
MsaG016818	AT2G20180.8	37.079	89	51	1	196	284	256	339	6.67e-11	62.8
MsaG016818	AT4G34530.1	51.562	64	30	1	224	286	173	236	8.21e-11	62.8

Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAACCTTCTTGCTCTTCT+TGG	0.125181	3:+102536884	None:intergenic
GCTTGATGTGCCAGAATTTC+AGG	0.228928	3:-102537201	MsaT016818.1:CDS
GCTGCAGAAATTTCACATAT+TGG	0.264015	3:+102536236	None:intergenic
CGACTCATATTACCTTGATT+TGG	0.285078	3:+102536212	None:intergenic
TCTACATGCACCTGAAATTC+TGG	0.295024	3:+102537191	None:intergenic
TAAATTACCTTTGTCCCATT+TGG	0.321779	3:+102536382	None:intergenic
TCAAGTCCATTATAAGCAAT+TGG	0.332783	3:+102536048	None:intergenic
TATGCCCCAATTGCTTATAA+TGG	0.346115	3:-102536054	MsaT016818.1:CDS
CTTCTGCTTGGAGAAAATAA+TGG	0.350452	3:-102537464	MsaT016818.1:CDS
CAAGTCCATTATAAGCAATT+GGG	0.382500	3:+102536049	None:intergenic
CTACAAAATCTTGTACCAAA+TGG	0.385534	3:-102536397	MsaT016818.1:CDS
CATTCCCATTCGCCATCATC+AGG	0.393250	3:+102537554	None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG	0.393741	3:+102536678	None:intergenic
TACAAAATCTTGTACCAAAT+GGG	0.416760	3:-102536396	MsaT016818.1:CDS
GGAGAAAATAATGGGAACTT+TGG	0.422902	3:-102537455	MsaT016818.1:CDS
GAAGCCAATGCAAGTGTAGA+TGG	0.429354	3:-102536840	MsaT016818.1:CDS
TTCTGCTTGGAGAAAATAAT+GGG	0.435352	3:-102537463	MsaT016818.1:CDS
AACCTAAGTTGAAGCTGAAA+AGG	0.448825	3:-102537226	MsaT016818.1:CDS
ACATTGGATTCAATCTCAAC+CGG	0.458816	3:-102536026	MsaT016818.1:CDS
TTGCTCCCCTTCTGAAGCTG+AGG	0.486357	3:-102537417	MsaT016818.1:CDS
GATCAAACCTCGCTTCTGCT+TGG	0.495958	3:-102537476	MsaT016818.1:CDS
GCTTATAATGGACTTGACAT+TGG	0.507048	3:-102536042	MsaT016818.1:CDS
ATTTCTGCAGCTCCAAATCA+AGG	0.513225	3:-102536224	MsaT016818.1:intron
TATCCCTGATGATGGCGAAT+GGG	0.522217	3:-102537558	MsaT016818.1:CDS
ATGGTGGTGGAGAAATCTTC+CGG	0.539717	3:+102536007	None:intergenic
ATCCTCAAAGCCTCTATGCA+AGG	0.540493	3:-102536680	MsaT016818.1:CDS
ATGTTTCCCTCAGCTTCAGA+AGG	0.542520	3:+102537410	None:intergenic
CTTGGAGCTATCCCTGATGA+TGG	0.545545	3:-102537566	MsaT016818.1:CDS
TGCTCCCCTTCTGAAGCTGA+GGG	0.548801	3:-102537416	MsaT016818.1:CDS
GAAAGTAATCATTATACTCA+AGG	0.550308	3:-102537335	MsaT016818.1:CDS
AAGATAAGATAAACTCATGT+GGG	0.556515	3:-102537169	MsaT016818.1:CDS
ACTGTGTCTCTCAACTCCAA+TGG	0.558276	3:-102536735	MsaT016818.1:CDS
ATGTCCATCTACACTTGCAT+TGG	0.565311	3:+102536836	None:intergenic
TGATAATTACCCTTGCATAG+AGG	0.574539	3:+102536670	None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG	0.575825	3:+102537411	None:intergenic
CTATCCCTGATGATGGCGAA+TGG	0.588808	3:-102537559	MsaT016818.1:CDS
GAAGATAAGATAAACTCATG+TGG	0.590178	3:-102537170	MsaT016818.1:CDS
ATTGTGGTGGAGAGTCATCA+TGG	0.590276	3:+102537504	None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG	0.593714	3:-102536679	MsaT016818.1:intron
TTCAGAAGGGGAGCAAAACA+TGG	0.599755	3:+102537424	None:intergenic
TCTTGTACCAAATGGGACAA+AGG	0.600952	3:-102536389	MsaT016818.1:intron
CTCTGAGGTATAACCACTAG+AGG	0.615332	3:+102536812	None:intergenic
AAGTCCATTATAAGCAATTG+GGG	0.617408	3:+102536050	None:intergenic
GTTTCCCTCAGCTTCAGAAG+GGG	0.626059	3:+102537412	None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG	0.626774	3:-102536714	MsaT016818.1:CDS
CTCTAGTGGTTATACCTCAG+AGG	0.631424	3:-102536811	MsaT016818.1:CDS
TTCTAAGCTCTGATGATCTG+TGG	0.632585	3:-102536080	MsaT016818.1:CDS
GAGGTTTGATCAAGTAATTG+TGG	0.634212	3:+102537488	None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG	0.635660	3:-102536889	MsaT016818.1:CDS
GTTTGATCAAGTAATTGTGG+TGG	0.639569	3:+102537491	None:intergenic
ATTCCCATTCGCCATCATCA+GGG	0.639610	3:+102537555	None:intergenic
GTAGATGGACATACCTCTAG+TGG	0.644629	3:-102536825	MsaT016818.1:CDS
CTTCAGTTGCAAATATTCTG+CGG	0.648235	3:+102537528	None:intergenic
GGTTGATAGAAATGAAAACA+AGG	0.650583	3:-102536868	MsaT016818.1:CDS
AGAGGAGCAAAACATGTGTG+AGG	0.671006	3:-102536793	MsaT016818.1:CDS
ATGTGTGAGGAAAACAGTGG+AGG	0.712518	3:-102536780	MsaT016818.1:CDS
AACATGTGTGAGGAAAACAG+TGG	0.786485	3:-102536783	MsaT016818.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	102536005	102537597	102536005	ID=MsaG016818
Chr3	mRNA	102536005	102537597	102536005	ID=MsaT016818.1;Parent=MsaG016818
Chr3	exon	102536005	102536103	102536005	ID=MsaT016818.1.exon5;Parent=MsaT016818.1
Chr3	CDS	102536005	102536103	102536005	ID=cds.MsaT016818.1;Parent=MsaT016818.1
Chr3	exon	102536225	102536290	102536225	ID=MsaT016818.1.exon4;Parent=MsaT016818.1
Chr3	CDS	102536225	102536290	102536225	ID=cds.MsaT016818.1;Parent=MsaT016818.1
Chr3	exon	102536390	102536455	102536390	ID=MsaT016818.1.exon3;Parent=MsaT016818.1
Chr3	CDS	102536390	102536455	102536390	ID=cds.MsaT016818.1;Parent=MsaT016818.1
Chr3	exon	102536680	102536934	102536680	ID=MsaT016818.1.exon2;Parent=MsaT016818.1
Chr3	CDS	102536680	102536934	102536680	ID=cds.MsaT016818.1;Parent=MsaT016818.1
Chr3	exon	102537136	102537597	102537136	ID=MsaT016818.1.exon1;Parent=MsaT016818.1
Chr3	CDS	102537136	102537597	102537136	ID=cds.MsaT016818.1;Parent=MsaT016818.1

Gene Sequence

>MsaT016818.1

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACTAGAAAGTAATCATTATACTCAAGGTCACACAAACTACTATTTTGACTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAAAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCTAGTGGTTATACCTCAGAGGAGCAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCATCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCCCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACCGGAAGATTTCTCCACCACCATGA

Protein sequence

>MsaT016818.1

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSLESNHYTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKISPPP*