AlfalfaGEDB | MsaG016820

M. sativa ssp. caerulea / MsaG016820

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016820	CAB77055.1	98.723	235	3	0	1	235	1	235	8.04e-171	479

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016820	sp\|Q96289\|ZAT10_ARATH	51.899	237	96	7	1	231	1	225	3.63e-61	194

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016820	tr\|Q9LWA5\|Q9LWA5_MEDSA	98.723	235	3	0	1	235	1	235	3.84e-171	479

TFs/TRs:

Gene ID	Type	Classification
MsaG016820	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000153	MsaG016820	0.827244	3.106077e-54	8.315655e-52
MsaG001132	MsaG016820	0.805969	1.748317e-49	2.711156e-47
MsaG001369	MsaG016820	0.807056	1.033749e-49	1.644739e-47
MsaG002146	MsaG016820	0.816912	7.524558e-52	1.527163e-49
MsaG002564	MsaG016820	0.809326	3.413436e-50	5.734729e-48
MsaG002681	MsaG016820	0.801488	1.474349e-48	2.061505e-46
MsaG002727	MsaG016820	0.831133	3.576903e-55	1.069324e-52
MsaG003136	MsaG016820	0.829200	1.054656e-54	2.982822e-52
MsaG004298	MsaG016820	0.815402	1.630104e-51	3.183443e-49
MsaG004329	MsaG016820	0.810819	1.633165e-50	2.845231e-48
MsaG004432	MsaG016820	0.810669	1.759362e-50	3.053846e-48
MsaG004400	MsaG016820	0.803968	4.562068e-49	6.752768e-47
MsaG005063	MsaG016820	0.803047	7.065833e-49	1.023830e-46
MsaG005138	MsaG016820	0.802910	7.536956e-49	1.088668e-46
MsaG005256	MsaG016820	0.847971	1.560187e-59	7.893657e-57
MsaG005937	MsaG016820	0.837875	7.373927e-57	2.694002e-54
MsaG006230	MsaG016820	0.801331	1.586948e-48	2.211134e-46
MsaG006263	MsaG016820	0.813380	4.542839e-51	8.431456e-49
MsaG006380	MsaG016820	0.822392	4.277521e-53	1.002495e-50
MsaG006517	MsaG016820	0.800917	1.926259e-48	2.658856e-46
MsaG006550	MsaG016820	0.838315	5.688855e-57	2.106798e-54
MsaG007110	MsaG016820	0.814212	2.984465e-51	5.655926e-49
MsaG007290	MsaG016820	0.813869	3.548966e-51	6.668310e-49
MsaG007718	MsaG016820	0.811138	1.393652e-50	2.447014e-48
MsaG007841	MsaG016820	0.818557	3.215217e-52	6.807965e-50
MsaG007891	MsaG016820	0.807579	8.017999e-50	1.291662e-47
MsaG008033	MsaG016820	0.801940	1.191774e-48	1.683654e-46
MsaG008537	MsaG016820	0.800186	2.711100e-48	3.680883e-46
MsaG008606	MsaG016820	0.808251	5.779210e-50	9.461966e-48
MsaG008666	MsaG016820	0.801319	1.595710e-48	2.222730e-46
MsaG008877	MsaG016820	0.801875	1.229088e-48	1.733807e-46
MsaG009057	MsaG016820	0.809895	2.579200e-50	4.393382e-48
MsaG009193	MsaG016820	0.804650	3.293406e-49	4.952559e-47
MsaG009926	MsaG016820	0.809909	2.561605e-50	4.364872e-48
MsaG010069	MsaG016820	0.800217	2.671262e-48	3.629410e-46
MsaG010628	MsaG016820	0.803499	5.700677e-49	8.346982e-47
MsaG010594	MsaG016820	0.823282	2.659451e-53	6.384706e-51
MsaG010943	MsaG016820	0.816089	1.147856e-51	2.280973e-49
MsaG011144	MsaG016820	0.812048	8.858480e-51	1.590477e-48
MsaG011557	MsaG016820	0.822454	4.139592e-53	9.717389e-51
MsaG011823	MsaG016820	0.805850	1.851639e-49	2.863371e-47
MsaG011881	MsaG016820	0.823647	2.187610e-53	5.304138e-51
MsaG012292	MsaG016820	0.820093	1.441702e-52	3.178711e-50
MsaG012355	MsaG016820	0.811312	1.278379e-50	2.254232e-48
MsaG013088	MsaG016820	0.811068	1.443110e-50	2.529541e-48
MsaG013310	MsaG016820	0.807458	8.503517e-50	1.365955e-47
MsaG013369	MsaG016820	0.822514	4.007989e-53	9.424095e-51
MsaG015195	MsaG016820	0.816011	1.194754e-51	2.369450e-49
MsaG015782	MsaG016820	0.811525	1.149589e-50	2.037725e-48
MsaG016131	MsaG016820	0.801493	1.470689e-48	2.056638e-46
MsaG016366	MsaG016820	0.805795	1.901752e-49	2.937030e-47
MsaG016372	MsaG016820	0.812899	5.785540e-51	1.060949e-48
MsaG016433	MsaG016820	0.803037	7.096908e-49	1.028116e-46
MsaG016820	MsaG016872	0.874671	1.163882e-67	1.649837e-64
MsaG016820	MsaG016942	0.807708	7.529870e-50	1.216852e-47
MsaG016820	MsaG017003	0.832142	2.022504e-55	6.227298e-53
MsaG016820	MsaG017192	0.804855	2.985563e-49	4.511187e-47
MsaG016820	MsaG017271	0.818548	3.229538e-52	6.836840e-50
MsaG016820	MsaG017348	0.800950	1.897249e-48	2.620756e-46
MsaG016820	MsaG017551	0.808739	4.552054e-50	7.541122e-48
MsaG016820	MsaG017613	0.800532	2.306211e-48	3.155883e-46
MsaG016820	MsaG017682	0.822544	3.945344e-53	9.284271e-51
MsaG016820	MsaG017731	0.820633	1.085470e-52	2.427574e-50
MsaG016820	MsaG018082	0.814263	2.908504e-51	5.519100e-49
MsaG016820	MsaG018118	0.827486	2.719484e-54	7.330198e-52
MsaG016820	MsaG018132	0.819208	2.290042e-52	4.932763e-50
MsaG016820	MsaG018256	0.820239	1.335239e-52	2.955462e-50
MsaG016820	MsaG018466	0.832231	1.922666e-55	5.934690e-53
MsaG016820	MsaG018406	0.810056	2.381881e-50	4.073098e-48
MsaG016820	MsaG018425	0.802265	1.022617e-48	1.455417e-46
MsaG016820	MsaG018494	0.824000	1.809603e-53	4.429674e-51
MsaG016820	MsaG018634	0.811494	1.167949e-50	2.068694e-48
MsaG016820	MsaG018659	0.805280	2.435582e-49	3.716513e-47
MsaG016820	MsaG018876	0.806844	1.145815e-49	1.813919e-47
MsaG016820	MsaG018930	0.805705	1.985701e-49	3.060253e-47
MsaG016820	MsaG018998	0.830199	6.041905e-55	1.758541e-52
MsaG016820	MsaG019533	0.809317	3.427579e-50	5.757293e-48
MsaG016820	MsaG019676	0.803194	6.590659e-49	9.582414e-47
MsaG016820	MsaG019716	0.811741	1.032431e-50	1.839754e-48
MsaG016820	MsaG019776	0.802586	8.788670e-49	1.260094e-46
MsaG016820	MsaG019923	0.800854	1.983859e-48	2.734519e-46
MsaG016820	MsaG020583	0.813243	4.865193e-51	8.998867e-49
MsaG016820	MsaG020772	0.801115	1.755824e-48	2.434454e-46
MsaG016820	MsaG020775	0.803933	4.638894e-49	6.860957e-47
MsaG016820	MsaG022095	0.801319	1.595839e-48	2.222900e-46
MsaG016820	MsaG022939	0.811385	1.233112e-50	2.178244e-48
MsaG016820	MsaG023014	0.806061	1.673048e-49	2.600099e-47
MsaG016820	MsaG023612	0.806196	1.567101e-49	2.443347e-47
MsaG016820	MsaG023663	0.803746	5.069672e-49	7.465781e-47
MsaG016820	MsaG023664	0.806898	1.115941e-49	1.768926e-47
MsaG016820	MsaG023688	0.814765	2.254155e-51	4.331818e-49
MsaG016820	MsaG023691	0.815750	1.365370e-51	2.689908e-49
MsaG016820	MsaG024414	0.805578	2.111082e-49	3.243721e-47
MsaG016820	MsaG024707	0.800751	2.082026e-48	2.863204e-46
MsaG016820	MsaG024829	0.809802	2.699589e-50	4.588325e-48
MsaG016820	MsaG027293	0.813215	4.935316e-51	9.122275e-49
MsaG016820	MsaG027725	0.812589	6.757331e-51	1.229666e-48
MsaG016820	MsaG027757	0.811640	1.085966e-50	1.930335e-48
MsaG016820	MsaG027991	0.806362	1.446383e-49	2.263991e-47
MsaG016820	MsaG028107	0.834299	5.906373e-56	1.937378e-53
MsaG016820	MsaG028303	0.805840	1.861004e-49	2.877155e-47
MsaG016820	MsaG029038	0.841287	9.655940e-58	3.925384e-55
MsaG016820	MsaG029284	0.805342	2.364694e-49	3.613586e-47
MsaG016820	MsaG029742	0.803285	6.311773e-49	9.196163e-47
MsaG016820	MsaG030014	0.810985	1.504021e-50	2.630874e-48
MsaG016820	MsaG030106	0.804154	4.174180e-49	6.205480e-47
MsaG016820	MsaG030246	0.803370	6.060827e-49	8.848071e-47
MsaG016820	MsaG030612	0.800265	2.612276e-48	3.553107e-46
MsaG016820	MsaG030992	0.812495	7.082954e-51	1.285928e-48
MsaG016820	MsaG032340	0.805005	2.779178e-49	4.213919e-47
MsaG016820	MsaG032634	0.830399	5.400556e-55	1.580935e-52
MsaG016820	MsaG032764	0.802572	8.846557e-49	1.267986e-46
MsaG016820	MsaG032841	0.802513	9.094705e-49	1.301792e-46
MsaG016820	MsaG033434	0.801849	1.243715e-48	1.753427e-46
MsaG016820	MsaG033723	0.800294	2.578154e-48	3.508903e-46
MsaG016820	MsaG034644	0.811380	1.235804e-50	2.182776e-48
MsaG016820	MsaG034839	0.812758	6.209291e-51	1.134661e-48
MsaG016820	MsaG035456	0.813270	4.799248e-51	8.882865e-49
MsaG016820	MsaG036122	0.819921	1.577221e-52	3.461598e-50
MsaG016820	MsaG036150	0.802587	8.783491e-49	1.259390e-46
MsaG016820	MsaG036468	0.805553	2.136691e-49	3.281117e-47
MsaG016820	MsaG037804	0.805492	2.200120e-49	3.373751e-47
MsaG016820	MsaG040099	0.821835	5.749665e-53	1.327513e-50
MsaG016820	MsaG040261	0.829969	6.869369e-55	1.986327e-52
MsaG016820	MsaG040572	0.802433	9.447106e-49	1.349744e-46
MsaG016820	MsaG041055	0.805316	2.394169e-49	3.656411e-47
MsaG016820	MsaG041087	0.817889	4.544995e-52	9.459266e-50
MsaG016820	MsaG041292	0.801048	1.811660e-48	2.508055e-46
MsaG016820	MsaG041354	0.804630	3.325863e-49	4.998966e-47
MsaG016820	MsaG041358	0.809395	3.298540e-50	5.551281e-48
MsaG016820	MsaG041370	0.805749	1.944001e-49	2.999071e-47
MsaG016820	MsaG041653	0.813319	4.682626e-51	8.677632e-49
MsaG016820	MsaG043333	0.833675	8.444622e-56	2.719370e-53
MsaG016820	MsaG044119	0.800101	2.820226e-48	3.821794e-46
MsaG016820	MsaG044313	0.804738	3.158626e-49	4.759569e-47
MsaG016820	MsaG044532	0.807926	6.772042e-50	1.100143e-47
MsaG016820	MsaG044536	0.812302	7.802042e-51	1.409620e-48
MsaG016820	MsaG044576	0.811747	1.029435e-50	1.834685e-48
MsaG016820	MsaG044852	0.802572	8.846306e-49	1.267951e-46
MsaG016820	MsaG044940	0.815426	1.610434e-51	3.146903e-49
MsaG016820	MsaG044942	0.812885	5.824137e-51	1.067680e-48
MsaG016820	MsaG044945	0.804493	3.551122e-49	5.320659e-47
MsaG016820	MsaG045286	0.803473	5.773249e-49	8.448094e-47
MsaG016820	MsaG045360	0.801884	1.223742e-48	1.726638e-46
MsaG016820	MsaG045492	0.814000	3.321715e-51	6.261687e-49
MsaG016820	MsaG045517	0.830773	4.379129e-55	1.295677e-52
MsaG016820	MsaG045623	0.803626	5.368433e-49	7.883446e-47
MsaG016820	MsaG046598	0.804363	3.777141e-49	5.642547e-47
MsaG016820	MsaG046628	0.814624	2.422083e-51	4.637796e-49
MsaG016820	MsaG047166	0.805898	1.809549e-49	2.801427e-47
MsaG016820	MsaG003487	0.803774	5.001802e-49	7.370523e-47
MsaG016820	MsaG002237	0.816647	8.621026e-52	1.737726e-49
MsaG016820	MsaG008139	0.831450	2.990879e-55	9.024365e-53
MsaG016820	MsaG009150	0.809771	2.741730e-50	4.656321e-48
MsaG016820	MsaG012533	0.823193	2.789616e-53	6.680765e-51
MsaG016820	MsaG013930	0.814457	2.636523e-51	5.027304e-49
MsaG016820	MsaG014187	0.810152	2.271696e-50	3.893758e-48
MsaG016820	MsaG012992	0.816761	8.134249e-52	1.644481e-49
MsaG016820	MsaG011548	0.821207	8.019957e-53	1.821129e-50
MsaG016820	MsaG014697	0.802362	9.767542e-49	1.393286e-46
MsaG016820	MsaG018949	0.806845	1.145020e-49	1.812721e-47
MsaG016820	MsaG019705	0.803821	4.890965e-49	7.215073e-47
MsaG016820	MsaG019703	0.817462	5.668385e-52	1.166841e-49
MsaG016820	MsaG024064	0.801456	1.496142e-48	2.090532e-46
MsaG016820	MsaG026612	0.806261	1.518831e-49	2.371765e-47
MsaG016820	MsaG027436	0.812244	8.032938e-51	1.449211e-48
MsaG016820	MsaG029778	0.809880	2.597849e-50	4.423579e-48
MsaG016820	MsaG028769	0.821052	8.703024e-53	1.968182e-50
MsaG016820	MsaG026813	0.805020	2.759032e-49	4.184940e-47
MsaG016820	MsaG033838	0.809496	3.138351e-50	5.294904e-48
MsaG016820	MsaG033413	0.826797	3.967886e-54	1.049105e-51
MsaG016820	MsaG029962	0.812285	7.867266e-51	1.420801e-48
MsaG016820	MsaG030575	0.804048	4.391350e-49	6.512468e-47
MsaG016820	MsaG036708	0.805496	2.195230e-49	3.366603e-47
MsaG016820	MsaG037527	0.820884	9.509629e-53	2.140973e-50
MsaG016820	MsaG037636	0.801913	1.207112e-48	1.704290e-46
MsaG016820	MsaG042682	0.800213	2.676889e-48	3.636635e-46
MsaG016820	MsaG043061	0.801352	1.570970e-48	2.189906e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016820	MtrunA17_Chr3g0134711	94.958	238	7	3	1	235	1	236	1.24e-150	418
MsaG016820	MtrunA17_Chr1g0152661	55.102	245	83	8	1	233	1	230	4.64e-78	234
MsaG016820	MtrunA17_Chr1g0207451	48.846	260	86	14	1	230	3	245	3.18e-56	179
MsaG016820	MtrunA17_Chr4g0012791	30.693	202	72	6	30	163	134	335	3.67e-19	85.9
MsaG016820	MtrunA17_Chr7g0231181	40.152	132	53	4	84	215	240	345	4.65e-19	84.7
MsaG016820	MtrunA17_Chr4g0012691	45.652	92	48	2	76	165	212	303	4.93e-19	84.7
MsaG016820	MtrunA17_Chr7g0263121	39.823	113	53	4	52	162	15	114	1.08e-18	80.5
MsaG016820	MtrunA17_Chr1g0182161	30.769	169	90	3	58	209	1	159	1.42e-18	80.1
MsaG016820	MtrunA17_Chr7g0222831	34.375	128	70	2	52	179	12	125	7.95e-17	75.9
MsaG016820	MtrunA17_Chr1g0197281	30.415	217	96	9	40	203	89	303	9.24e-17	78.2
MsaG016820	MtrunA17_Chr1g0180311	31.683	202	81	7	52	207	81	271	1.83e-16	76.6
MsaG016820	MtrunA17_Chr5g0448611	35.915	142	66	3	48	164	94	235	2.00e-16	76.3
MsaG016820	MtrunA17_Chr5g0425411	39.130	138	73	3	38	164	71	208	2.87e-16	75.5
MsaG016820	MtrunA17_Chr1g0212561	37.984	129	68	3	34	162	2	118	7.40e-16	73.6
MsaG016820	MtrunA17_Chr1g0182181	33.529	170	85	5	47	209	6	154	2.21e-15	71.2
MsaG016820	MtrunA17_Chr7g0263131	43.038	79	38	2	84	162	34	105	4.36e-15	70.5
MsaG016820	MtrunA17_Chr2g0327901	35.714	126	49	3	37	162	2	95	2.07e-14	67.8
MsaG016820	MtrunA17_Chr4g0061301	38.514	148	49	8	85	200	349	486	2.08e-14	72.0
MsaG016820	MtrunA17_Chr2g0320311	29.907	214	96	6	41	200	64	277	6.28e-14	69.7
MsaG016820	MtrunA17_Chr4g0056091	30.435	207	94	8	15	200	124	301	1.11e-13	68.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016820	AT1G27730.1	51.899	237	96	7	1	231	1	225	3.69e-62	194
MsaG016820	AT5G04340.1	49.576	236	98	10	1	222	1	229	1.59e-55	177
MsaG016820	AT3G19580.1	45.802	262	102	10	1	227	1	257	4.94e-50	165
MsaG016820	AT3G19580.2	45.802	262	102	10	1	227	1	257	4.94e-50	165
MsaG016820	AT5G43170.1	48.718	234	70	11	1	226	1	192	5.57e-46	152
MsaG016820	AT3G49930.1	49.143	175	68	5	30	200	36	193	1.02e-39	136
MsaG016820	AT5G67450.1	41.250	240	98	8	1	200	1	237	1.81e-39	137
MsaG016820	AT2G45120.1	40.237	169	78	5	44	200	143	300	2.96e-24	98.6
MsaG016820	AT3G60580.1	37.209	172	79	4	44	200	119	276	8.99e-24	97.1
MsaG016820	AT2G28200.1	33.178	214	105	7	44	220	68	280	1.08e-22	94.0
MsaG016820	AT1G49900.1	51.579	95	40	2	85	178	194	283	8.81e-22	94.0
MsaG016820	AT1G49900.1	40.000	135	72	3	83	217	749	874	6.52e-18	82.8
MsaG016820	AT5G56200.1	47.423	97	38	2	84	167	342	438	1.46e-20	90.1
MsaG016820	AT5G03510.1	33.166	199	93	5	43	203	64	260	5.41e-19	84.0
MsaG016820	AT1G02040.1	31.771	192	94	8	5	163	61	248	1.72e-18	83.2
MsaG016820	AT2G37430.1	38.095	126	67	2	37	162	2	116	7.89e-17	75.9
MsaG016820	AT4G35280.1	38.400	125	53	4	48	164	138	246	1.23e-16	77.4
MsaG016820	AT1G02030.1	34.194	155	79	4	47	200	123	255	2.80e-16	76.3
MsaG016820	AT2G17180.1	30.625	160	76	5	48	200	121	252	7.93e-16	75.1
MsaG016820	AT3G46080.1	40.171	117	46	3	49	162	12	107	1.15e-15	72.4
MsaG016820	AT3G46090.1	36.923	130	62	3	39	167	3	113	1.82e-15	72.0
MsaG016820	AT5G59820.1	37.815	119	52	3	55	173	18	114	2.78e-15	71.2
MsaG016820	AT5G04390.1	28.889	225	90	7	48	203	96	319	6.36e-15	73.6
MsaG016820	AT3G53600.1	34.127	126	71	2	37	162	2	115	8.61e-15	70.5
MsaG016820	AT2G28710.1	39.640	111	43	3	52	162	14	100	5.43e-14	67.8
MsaG016820	AT3G10470.1	38.235	102	40	4	84	162	182	283	1.76e-12	66.6
MsaG016820	AT3G46070.1	34.545	110	55	3	53	162	16	108	2.28e-12	63.5
MsaG016820	AT5G61470.1	37.179	78	39	2	86	163	230	297	9.31e-11	60.8

Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCCTACTGGACAGGCTTT+GGG	0.284852	3:+102566579	MsaT016820.1:CDS
TTGCGGACATAACAGCTTTC+CGG	0.302034	3:-102566452	None:intergenic
CTTCCCTACTGGACAGGCTT+TGG	0.307779	3:+102566578	MsaT016820.1:CDS
GTTTCAAGATAACTCAGATT+TGG	0.369889	3:-102566195	None:intergenic
TACTCCTTTCACACCCTTTG+AGG	0.385893	3:+102566170	MsaT016820.1:CDS
GGCAGCGTTGGTGCCGGTGC+CGG	0.399502	3:+102566627	MsaT016820.1:CDS
CTCAGATTTGGTTCCTCAAA+GGG	0.424837	3:-102566183	None:intergenic
GTTGGTGCCGGTGCCGGTGC+TGG	0.425482	3:+102566633	MsaT016820.1:CDS
CATAACAGCTTTCCGGTGAC+TGG	0.439265	3:-102566445	None:intergenic
GGCTTCTTTGCAGCAGGTAA+AGG	0.446061	3:-102566783	None:intergenic
AATTTCCAGCTTGAAAAGAC+AGG	0.452679	3:-102566805	None:intergenic
CTGATCTTCAGCGGTGGTTG+CGG	0.460016	3:-102566469	None:intergenic
TTTGAAAAGTCCGGAAAAGC+CGG	0.466243	3:-102566729	None:intergenic
ACTGGCTTTGTGTCCACCTA+GGG	0.475209	3:-102566427	None:intergenic
GATCGTTTACCTTTCGTCCA+CGG	0.485045	3:-102566219	None:intergenic
CTTACCGTTGGAAGCAGAGC+TGG	0.488264	3:-102566520	None:intergenic
GCATTTGTGACTGAGTTTAA+CGG	0.491121	3:-102566370	None:intergenic
ATGAGTCTTGTTCTTACCGT+TGG	0.503655	3:-102566532	None:intergenic
TGTCACAAATCCTTCCCTAC+TGG	0.506283	3:+102566567	MsaT016820.1:CDS
AGACAGGGCTTCTTTGCAGC+AGG	0.516606	3:-102566789	None:intergenic
GGTTCCTCAAAGGGTGTGAA+AGG	0.517530	3:-102566174	None:intergenic
ACGATCAAAGCGTTCTCGCA+TGG	0.518878	3:+102566236	MsaT016820.1:CDS
TACGAAGGCAGCGTTGGTGC+CGG	0.519961	3:+102566621	MsaT016820.1:CDS
TTGAAAAGTCCGGAAAAGCC+GGG	0.523321	3:-102566728	None:intergenic
GACTGGCTTTGTGTCCACCT+AGG	0.526559	3:-102566428	None:intergenic
CAAATCCTTCCCTACTGGAC+AGG	0.527321	3:+102566572	MsaT016820.1:CDS
CTGAGTTTAACGGTGGTTAG+CGG	0.533899	3:-102566360	None:intergenic
CCTCCCAAAGCCTGTCCAGT+AGG	0.538116	3:-102566582	None:intergenic
ACTCAGATTTGGTTCCTCAA+AGG	0.539745	3:-102566184	None:intergenic
AGGGAAGGATTTGTGACAGA+TGG	0.550231	3:-102566562	None:intergenic
TTCTCATCTTATCAAGCCCT+AGG	0.550654	3:+102566411	MsaT016820.1:CDS
GTAACTGCCTCTGAAGGAGT+TGG	0.551176	3:+102566666	MsaT016820.1:CDS
CTCCCAAAGCCTGTCCAGTA+GGG	0.562622	3:-102566581	None:intergenic
CTTGAAACACCGTGGACGAA+AGG	0.563216	3:+102566210	MsaT016820.1:CDS
TGTGAAAGGAGTAGCAGTGG+TGG	0.569120	3:-102566160	None:intergenic
TGTCACTACGAAGGCAGCGT+TGG	0.571767	3:+102566615	MsaT016820.1:CDS
GGTAGTCACGGCGGATGAAG+TGG	0.575582	3:-102566499	None:intergenic
GCTACTTCCAGCACCGGCAC+CGG	0.578492	3:-102566640	None:intergenic
TAAGATCAAAATCACGGTGG+TGG	0.583762	3:-102566701	None:intergenic
CAAAGCCTGTCCAGTAGGGA+AGG	0.583815	3:-102566577	None:intergenic
GGAAGCAGAGCTGGTAGTCA+CGG	0.585255	3:-102566511	None:intergenic
CTCATCATGCTTGCTCGCAG+CGG	0.585296	3:+102566300	MsaT016820.1:CDS
GTGGACACAAAGCCAGTCAC+CGG	0.585980	3:+102566433	MsaT016820.1:CDS
ATTTCCAGCTTGAAAAGACA+GGG	0.591447	3:-102566804	None:intergenic
TACAGCGCTACTTCCAGCAC+CGG	0.591699	3:-102566646	None:intergenic
ATTATTGATCAGTAATGAGA+AGG	0.592327	3:-102566828	None:intergenic
GTGAAAGGAGTAGCAGTGGT+GGG	0.592634	3:-102566159	None:intergenic
AGCGCTGTAACTGCCTCTGA+AGG	0.607763	3:+102566660	MsaT016820.1:CDS
CCTACTGGACAGGCTTTGGG+AGG	0.612476	3:+102566582	MsaT016820.1:CDS
TCATCTTATCAAGCCCTAGG+TGG	0.625860	3:+102566414	MsaT016820.1:CDS
TGACGATCCAACTCCTTCAG+AGG	0.633382	3:-102566673	None:intergenic
GGGTGTGAAAGGAGTAGCAG+TGG	0.640901	3:-102566163	None:intergenic
ACTACCAGCTCTGCTTCCAA+CGG	0.645257	3:+102566516	MsaT016820.1:CDS
GGAGGTTAAGATCAAAATCA+CGG	0.658091	3:-102566707	None:intergenic
AGTCACGGCGGATGAAGTGG+TGG	0.674100	3:-102566496	None:intergenic
CACAAGCGTTGTCACTACGA+AGG	0.677003	3:+102566606	MsaT016820.1:CDS
TTTGTGACTGAGTTTAACGG+TGG	0.692042	3:-102566367	None:intergenic
AGCAGAGCTGGTAGTCACGG+CGG	0.700777	3:-102566508	None:intergenic
GGTGATCTGATCTTCAGCGG+TGG	0.700953	3:-102566475	None:intergenic
GGTGGTGATCTGATCTTCAG+CGG	0.704088	3:-102566478	None:intergenic
AAAAGTCCGGAAAAGCCGGG+AGG	0.720865	3:-102566725	None:intergenic
TGAGTTATCTTGAAACACCG+TGG	0.739154	3:+102566202	MsaT016820.1:CDS
GGTTAAGATCAAAATCACGG+TGG	0.807668	3:-102566704	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	102566135	102566842	102566135	ID=MsaG016820
Chr3	mRNA	102566135	102566842	102566135	ID=MsaT016820.1;Parent=MsaG016820
Chr3	exon	102566135	102566842	102566135	ID=MsaT016820.1.exon1;Parent=MsaT016820.1
Chr3	CDS	102566135	102566842	102566135	ID=cds.MsaT016820.1;Parent=MsaT016820.1

Gene Sequence

>MsaT016820.1

ATGGCTATGGAAGCACTTAACTCACCCACCACTGCTACTCCTTTCACACCCTTTGAGGAACCAAATCTGAGTTATCTTGAAACACCGTGGACGAAAGGTAAACGATCAAAGCGTTCTCGCATGGATCAATCTTCATGCACTGAAGAAGAGTATCTCGCTCTTTGTCTCATCATGCTTGCTCGCAGCGGTAACAACAACGACAAAAAGTCTGATTCGGTGGCGACGCCGCTAACCACCGTTAAACTCAGTCACAAATGCTCAGTCTGCAACAAAGCTTTCTCATCTTATCAAGCCCTAGGTGGACACAAAGCCAGTCACCGGAAAGCTGTTATGTCCGCAACCACCGCTGAAGATCAGATCACCACCACTTCATCCGCCGTGACTACCAGCTCTGCTTCCAACGGTAAGAACAAGACTCATGAGTGTTCCATCTGTCACAAATCCTTCCCTACTGGACAGGCTTTGGGAGGACACAAGCGTTGTCACTACGAAGGCAGCGTTGGTGCCGGTGCCGGTGCTGGAAGTAGCGCTGTAACTGCCTCTGAAGGAGTTGGATCGTCACACAGCCACCACCGTGATTTTGATCTTAACCTCCCGGCTTTTCCGGACTTTTCAAAGAAGTTTTTCGTGGATGACGAGGTTTCTAGTCCTTTACCTGCTGCAAAGAAGCCCTGTCTTTTCAAGCTGGAAATTCCTTCTCATTACTGA

Protein sequence

>MsaT016820.1

MAMEALNSPTTATPFTPFEEPNLSYLETPWTKGKRSKRSRMDQSSCTEEEYLALCLIMLARSGNNNDKKSDSVATPLTTVKLSHKCSVCNKAFSSYQALGGHKASHRKAVMSATTAEDQITTTSSAVTTSSASNGKNKTHECSICHKSFPTGQALGGHKRCHYEGSVGAGAGAGSSAVTASEGVGSSHSHHRDFDLNLPAFPDFSKKFFVDDEVSSPLPAAKKPCLFKLEIPSHY*