AlfalfaGEDB | MsaG016842

M. sativa ssp. caerulea / MsaG016842

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	KEH35774.1	92.935	184	13	0	1	184	1	184	1.23e-114	333

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	sp\|O49397\|ARR10_ARATH	53.125	224	59	1	6	183	11	234	4.71e-73	232

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	tr\|A0A072V176\|A0A072V176_MEDTR	92.935	184	13	0	1	184	1	184	5.90e-115	333

TFs/TRs:

Gene ID	Type	Classification
MsaG016842	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000356	MsaG016842	0.836759	1.418930e-56	5.010594e-54
MsaG000457	MsaG016842	0.811387	1.231393e-50	2.175359e-48
MsaG002836	MsaG016842	0.887936	2.006507e-72	5.319794e-69
MsaG003330	MsaG016842	0.803938	4.625820e-49	6.842454e-47
MsaG005663	MsaG016842	0.812476	7.152138e-51	1.297845e-48
MsaG006203	MsaG016842	0.827141	3.287073e-54	8.774833e-52
MsaG007263	MsaG016842	0.821590	6.546384e-53	1.501649e-50
MsaG007848	MsaG016842	0.860382	4.224237e-63	3.333166e-60
MsaG007852	MsaG016842	0.855178	1.452668e-61	9.444740e-59
MsaG008287	MsaG016842	0.845230	8.671923e-59	4.003650e-56
MsaG009101	MsaG016842	0.829978	6.833855e-55	1.976552e-52
MsaG010547	MsaG016842	0.854687	2.013148e-61	1.286101e-58
MsaG012185	MsaG016842	0.802371	9.726552e-49	1.387714e-46
MsaG012429	MsaG016842	0.825383	8.574572e-54	2.179737e-51
MsaG014035	MsaG016842	0.834424	5.496036e-56	1.809602e-53
MsaG015023	MsaG016842	0.846716	3.436605e-59	1.666913e-56
MsaG016842	MsaG019164	0.804562	3.435615e-49	5.155950e-47
MsaG016842	MsaG019411	0.869099	8.083598e-66	9.020865e-63
MsaG016842	MsaG019414	0.860296	4.482457e-63	3.525498e-60
MsaG016842	MsaG019562	0.805077	2.685157e-49	4.078105e-47
MsaG016842	MsaG020322	0.836917	1.293400e-56	4.589275e-54
MsaG016842	MsaG020511	0.801670	1.353440e-48	1.900299e-46
MsaG016842	MsaG020664	0.822780	3.478977e-53	8.239282e-51
MsaG016842	MsaG022563	0.817260	6.290761e-52	1.288273e-49
MsaG016842	MsaG022865	0.864423	2.451267e-64	2.263170e-61
MsaG016842	MsaG025214	0.828799	1.317266e-54	3.683783e-52
MsaG016842	MsaG025955	0.808017	6.477127e-50	1.054518e-47
MsaG016842	MsaG027677	0.832612	1.548664e-55	4.833589e-53
MsaG016842	MsaG028014	0.851926	1.235259e-60	7.157424e-58
MsaG016842	MsaG028146	0.825307	8.938473e-54	2.267506e-51
MsaG016842	MsaG028565	0.808604	4.863667e-50	8.030636e-48
MsaG016842	MsaG028827	0.834742	4.575982e-56	1.521092e-53
MsaG016842	MsaG033999	0.807234	9.481520e-50	1.514884e-47
MsaG016842	MsaG034704	0.820584	1.113755e-52	2.487650e-50
MsaG016842	MsaG036037	0.856681	5.303149e-62	3.642192e-59
MsaG016842	MsaG036148	0.827467	2.748682e-54	7.404846e-52
MsaG016842	MsaG044515	0.832790	1.399889e-55	4.391944e-53
MsaG016842	MsaG045073	0.826256	5.334696e-54	1.389415e-51
MsaG016842	MsaG045079	0.833908	7.392383e-56	2.396654e-53
MsaG016842	MsaG045081	0.809006	3.993279e-50	6.657925e-48
MsaG016842	MsaG045268	0.831030	3.790367e-55	1.129778e-52
MsaG016842	MsaG045720	0.876679	2.402455e-68	3.723561e-65
MsaG016842	MsaG045937	0.863610	4.376934e-64	3.913079e-61
MsaG016842	MsaG046952	0.875976	4.186380e-68	6.288141e-65
MsaG016842	MsaG002762	0.838527	5.017666e-57	1.870655e-54
MsaG016842	MsaG004914	0.810216	2.201170e-50	3.778724e-48
MsaG016842	MsaG005679	0.836709	1.460846e-56	5.150907e-54
MsaG016842	MsaG003075	0.856909	4.548991e-62	3.150195e-59
MsaG016842	MsaG004868	0.818545	3.234611e-52	6.847036e-50
MsaG016842	MsaG009099	0.821184	8.115426e-53	1.841730e-50
MsaG016842	MsaG009105	0.810074	2.360857e-50	4.038933e-48
MsaG016842	MsaG013523	0.853975	3.224814e-61	2.008665e-58
MsaG016842	MsaG019962	0.829478	9.036001e-55	2.576256e-52
MsaG016842	MsaG019926	0.808152	6.066783e-50	9.908821e-48
MsaG016842	MsaG020085	0.808765	4.495050e-50	7.451058e-48
MsaG016842	MsaG028214	0.814375	2.747271e-51	5.227902e-49
MsaG016842	MsaG033179	0.845305	8.276074e-59	3.830295e-56
MsaG016842	MsaG032007	0.811330	1.267117e-50	2.235340e-48
MsaG016842	MsaG037456	0.807377	8.844989e-50	1.418044e-47
MsaG016842	MsaG036647	0.885611	1.512095e-71	3.567705e-68

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	MtrunA17_Chr3g0134481	92.935	184	13	0	1	184	1	184	1.14e-118	333
MsaG016842	MtrunA17_Chr3g0134461	73.846	195	40	2	1	184	1	195	2.24e-89	259
MsaG016842	MtrunA17_Chr3g0137101	84.211	133	21	0	1	133	1	133	1.87e-74	235
MsaG016842	MtrunA17_Chr3g0137101	76.471	51	12	0	131	181	197	247	1.50e-20	88.2
MsaG016842	MtrunA17_Chr2g0294911	43.404	235	75	2	5	181	26	260	7.11e-61	199
MsaG016842	MtrunA17_Chr3g0123131	45.339	236	67	2	8	181	13	248	1.99e-60	197
MsaG016842	MtrunA17_Chr8g0376881	45.763	236	68	2	6	181	23	258	7.69e-60	194
MsaG016842	MtrunA17_Chr2g0304841	67.424	132	43	0	2	133	12	143	4.61e-58	192
MsaG016842	MtrunA17_Chr2g0304841	66.667	51	17	0	131	181	212	262	2.38e-16	76.3
MsaG016842	MtrunA17_Chr1g0149841	69.767	129	39	0	5	133	2	130	2.13e-57	187
MsaG016842	MtrunA17_Chr1g0149841	74.510	51	13	0	131	181	190	240	4.75e-18	80.9
MsaG016842	MtrunA17_Chr1g0149851	66.923	130	43	0	5	134	2	131	5.63e-55	182
MsaG016842	MtrunA17_Chr1g0149851	48.485	66	19	1	131	181	190	255	8.01e-11	60.1
MsaG016842	MtrunA17_Chr7g0275891	67.692	130	41	1	5	133	2	131	9.79e-55	177
MsaG016842	MtrunA17_Chr7g0275891	51.562	64	18	1	131	181	190	253	4.99e-13	66.2
MsaG016842	MtrunA17_Chr4g0067981	58.647	133	55	0	3	135	26	158	5.52e-53	179
MsaG016842	MtrunA17_Chr4g0067981	66.667	51	17	0	131	181	214	264	9.74e-17	77.4
MsaG016842	MtrunA17_Chr7g0275401	57.051	156	63	1	5	160	2	153	3.98e-51	166
MsaG016842	MtrunA17_Chr7g0275401	62.745	51	19	0	131	181	191	241	1.70e-15	72.8
MsaG016842	MtrunA17_Chr4g0074411	61.538	130	50	0	2	131	12	141	4.09e-50	170
MsaG016842	MtrunA17_Chr4g0074411	66.667	51	17	0	131	181	200	250	1.04e-15	74.3
MsaG016842	MtrunA17_Chr4g0074401	64.516	124	44	0	8	131	17	140	1.26e-48	166
MsaG016842	MtrunA17_Chr4g0074401	64.706	51	18	0	131	181	202	252	4.00e-15	72.4
MsaG016842	MtrunA17_Chr1g0161431	57.042	142	56	1	4	140	7	148	7.77e-47	161
MsaG016842	MtrunA17_Chr1g0161431	63.462	52	19	0	130	181	198	249	2.04e-16	76.3
MsaG016842	MtrunA17_Chr4g0009851	36.916	214	99	2	3	181	6	218	4.94e-42	143
MsaG016842	MtrunA17_Chr4g0009901	34.928	209	100	2	8	181	10	217	1.10e-36	128
MsaG016842	MtrunA17_Chr4g0074421	68.000	75	24	0	57	131	1	75	6.00e-31	111
MsaG016842	MtrunA17_Chr4g0074421	62.745	51	19	0	131	181	132	182	8.72e-16	72.0
MsaG016842	MtrunA17_Chr4g0009981	35.976	164	70	1	53	181	2	165	4.14e-30	110
MsaG016842	MtrunA17_Chr6g0471041	32.701	211	108	2	7	183	13	223	2.02e-29	112
MsaG016842	MtrunA17_Chr1g0149831	70.149	67	20	0	67	133	1	67	8.10e-27	101
MsaG016842	MtrunA17_Chr1g0149831	64.706	51	15	1	131	181	127	174	9.27e-14	67.0
MsaG016842	MtrunA17_Chr8g0391911	28.692	237	107	5	8	183	9	244	4.91e-25	97.4
MsaG016842	MtrunA17_Chr3g0127941	37.302	126	74	2	12	133	56	180	3.32e-21	90.1
MsaG016842	MtrunA17_Chr4g0030271	39.669	121	70	1	12	129	89	209	3.39e-21	90.1
MsaG016842	MtrunA17_Chr1g0181811	38.017	121	72	2	12	129	85	205	4.39e-21	89.7
MsaG016842	MtrunA17_Chr7g0276361	36.170	141	79	3	1	133	1	138	1.44e-20	88.2
MsaG016842	MtrunA17_Chr8g0383961	35.294	136	83	1	7	142	13	143	2.12e-20	85.5
MsaG016842	MtrunA17_Chr8g0345901	38.655	119	70	1	14	129	38	156	2.12e-19	85.1
MsaG016842	MtrunA17_Chr4g0061021	33.065	124	80	1	12	132	33	156	2.50e-18	81.6
MsaG016842	MtrunA17_Chr6g0456631	32.540	126	82	3	6	129	7	131	5.37e-18	77.0
MsaG016842	MtrunA17_Chr3g0091641	32.258	124	81	1	12	132	24	147	1.88e-17	79.3
MsaG016842	MtrunA17_Chr4g0011071	28.676	136	62	1	58	158	39	174	2.64e-17	75.5
MsaG016842	MtrunA17_Chr4g0009991	36.134	119	42	1	100	184	1	119	2.86e-17	73.9
MsaG016842	MtrunA17_Chr8g0350761	30.882	136	85	2	11	137	20	155	1.60e-15	73.6
MsaG016842	MtrunA17_Chr5g0400241	38.211	123	70	3	8	128	14	132	4.96e-15	72.4
MsaG016842	MtrunA17_Chr5g0400241	50.980	51	25	0	131	181	310	360	9.58e-12	62.8
MsaG016842	MtrunA17_Chr6g0473731	28.148	135	56	1	88	181	10	144	5.51e-14	69.3
MsaG016842	MtrunA17_Chr4g0031961	52.941	51	24	0	131	181	130	180	8.21e-13	65.5
MsaG016842	MtrunA17_Chr5g0423031	35.802	81	51	1	8	88	10	89	3.26e-12	62.0
MsaG016842	MtrunA17_Chr4g0054981	33.607	122	77	2	8	128	14	132	4.90e-12	63.5
MsaG016842	MtrunA17_Chr4g0054981	50.943	53	26	0	131	183	309	361	6.65e-12	63.2
MsaG016842	MtrunA17_Chr4g0040481	49.020	51	26	0	131	181	157	207	7.64e-12	62.8
MsaG016842	MtrunA17_Chr7g0255711	49.020	51	26	0	131	181	90	140	1.46e-11	61.6
MsaG016842	MtrunA17_Chr2g0324891	49.020	51	26	0	131	181	160	210	1.52e-11	62.0
MsaG016842	MtrunA17_Chr8g0352871	28.986	138	78	3	14	131	11	148	2.26e-11	59.7
MsaG016842	MtrunA17_Chr4g0010001	35.802	81	51	1	8	88	10	89	6.52e-11	56.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	AT4G31920.1	53.125	224	59	1	6	183	11	234	4.78e-74	232
MsaG016842	AT2G25180.1	68.217	129	41	0	3	131	8	136	2.83e-59	194
MsaG016842	AT2G25180.1	66.667	51	17	0	131	181	194	244	3.24e-17	79.0
MsaG016842	AT3G16857.1	54.861	144	63	1	8	151	33	174	2.80e-50	172
MsaG016842	AT3G16857.1	68.627	51	16	0	131	181	236	286	1.29e-16	77.4
MsaG016842	AT1G67710.1	43.644	236	70	5	9	181	8	243	2.88e-50	169
MsaG016842	AT3G16857.2	54.110	146	65	1	6	151	31	174	4.00e-50	171
MsaG016842	AT3G16857.2	68.627	51	16	0	131	181	236	286	1.65e-16	77.0
MsaG016842	AT5G58080.1	63.158	133	47	2	2	133	8	139	1.58e-45	158
MsaG016842	AT5G58080.1	64.706	51	18	0	131	181	193	243	5.85e-16	75.5
MsaG016842	AT2G01760.1	57.031	128	54	1	5	131	4	131	2.45e-43	148
MsaG016842	AT2G01760.1	59.259	54	22	0	130	183	198	251	2.01e-16	76.3
MsaG016842	AT2G01760.2	46.795	156	54	2	5	131	4	159	2.30e-37	133
MsaG016842	AT2G01760.2	59.259	54	22	0	130	183	226	279	2.20e-16	76.3
MsaG016842	AT3G16857.3	55.238	105	45	1	47	151	2	104	3.60e-34	127
MsaG016842	AT3G16857.3	68.627	51	16	0	131	181	166	216	1.49e-16	77.0
MsaG016842	AT5G49240.1	31.535	241	104	3	5	184	35	275	9.30e-30	111
MsaG016842	AT1G67710.2	41.011	178	42	5	67	181	1	178	3.19e-28	109
MsaG016842	AT1G49190.1	30.000	240	103	4	7	181	29	268	4.02e-27	106
MsaG016842	AT3G62670.1	32.068	237	102	4	2	181	31	265	6.58e-27	105
MsaG016842	AT5G24470.1	37.063	143	79	4	6	138	42	183	2.01e-22	94.0
MsaG016842	AT1G49190.2	37.600	125	78	0	7	131	29	153	4.06e-22	93.2
MsaG016842	AT2G01760.3	62.121	66	24	1	67	131	1	66	1.31e-20	87.4
MsaG016842	AT2G01760.3	60.377	53	21	0	131	183	134	186	1.60e-16	76.3
MsaG016842	AT2G46790.3	37.705	122	71	2	12	129	37	157	5.41e-20	86.7
MsaG016842	AT2G46790.1	37.705	122	71	2	12	129	37	157	5.46e-20	86.7
MsaG016842	AT5G02810.1	38.843	121	71	1	12	129	78	198	5.60e-20	87.0
MsaG016842	AT5G60100.7	38.017	121	72	1	12	129	64	184	1.69e-19	85.1
MsaG016842	AT5G60100.6	38.017	121	72	1	12	129	64	184	1.69e-19	85.1
MsaG016842	AT5G60100.4	38.017	121	72	1	12	129	64	184	1.69e-19	85.1
MsaG016842	AT5G60100.2	38.017	121	72	1	12	129	64	184	2.56e-19	85.1
MsaG016842	AT5G60100.5	38.017	121	72	1	12	129	64	184	3.81e-19	84.3
MsaG016842	AT5G60100.3	38.017	121	72	1	12	129	64	184	3.81e-19	84.3
MsaG016842	AT5G60100.1	38.017	121	72	1	12	129	64	184	3.81e-19	84.3
MsaG016842	AT5G61380.1	34.677	124	78	1	12	132	19	142	1.43e-18	82.8
MsaG016842	AT1G67710.3	34.810	158	40	5	87	181	12	169	8.12e-16	74.7
MsaG016842	AT5G07210.2	31.373	153	93	4	12	162	16	158	2.91e-14	70.5
MsaG016842	AT5G07210.2	50.980	51	25	0	131	181	221	271	5.96e-11	60.8
MsaG016842	AT5G44190.1	58.824	51	21	0	131	181	146	196	6.14e-14	69.3
MsaG016842	AT5G44190.2	58.824	51	21	0	131	181	146	196	6.41e-14	68.9
MsaG016842	AT4G18020.8	35.385	130	75	3	6	128	12	139	8.53e-13	66.2
MsaG016842	AT4G18020.8	47.541	61	30	1	125	183	287	347	8.29e-11	60.5
MsaG016842	AT4G18020.11	35.385	130	75	3	6	128	12	139	8.53e-13	66.2
MsaG016842	AT4G18020.11	47.541	61	30	1	125	183	287	347	8.29e-11	60.5
MsaG016842	AT4G18020.4	35.385	130	75	3	6	128	12	139	8.53e-13	66.2
MsaG016842	AT4G18020.4	47.541	61	30	1	125	183	287	347	8.29e-11	60.5
MsaG016842	AT4G18020.5	35.385	130	75	3	6	128	12	139	8.53e-13	66.2
MsaG016842	AT4G18020.5	47.541	61	30	1	125	183	287	347	8.29e-11	60.5
MsaG016842	AT4G18020.10	35.385	130	75	3	6	128	12	139	8.53e-13	66.2
MsaG016842	AT4G18020.10	47.541	61	30	1	125	183	287	347	8.29e-11	60.5
MsaG016842	AT4G18020.7	35.385	130	75	3	6	128	12	139	8.53e-13	66.2
MsaG016842	AT4G18020.7	47.541	61	30	1	125	183	287	347	8.29e-11	60.5
MsaG016842	AT4G18020.3	35.385	130	75	3	6	128	12	139	9.29e-13	66.2
MsaG016842	AT4G18020.3	47.541	61	30	1	125	183	287	347	7.04e-11	60.5
MsaG016842	AT4G18020.2	35.385	130	75	3	6	128	12	139	9.29e-13	66.2
MsaG016842	AT4G18020.2	47.541	61	30	1	125	183	287	347	7.04e-11	60.5
MsaG016842	AT4G18020.1	35.385	130	75	3	6	128	12	139	9.29e-13	66.2
MsaG016842	AT4G18020.1	47.541	61	30	1	125	183	287	347	7.04e-11	60.5
MsaG016842	AT4G18020.6	35.385	130	75	3	6	128	12	139	9.29e-13	66.2
MsaG016842	AT4G18020.6	47.541	61	30	1	125	183	287	347	7.04e-11	60.5
MsaG016842	AT4G18020.9	35.385	130	75	3	6	128	12	139	9.29e-13	66.2
MsaG016842	AT4G18020.9	47.541	61	30	1	125	183	287	347	7.04e-11	60.5
MsaG016842	AT5G59570.2	51.923	52	25	0	130	181	139	190	1.61e-12	64.7
MsaG016842	AT5G59570.1	51.923	52	25	0	130	181	139	190	1.61e-12	64.7
MsaG016842	AT2G40970.1	50.980	51	25	0	131	181	104	154	1.72e-12	64.3
MsaG016842	AT5G07210.1	30.488	164	88	6	12	162	16	166	2.01e-12	65.1
MsaG016842	AT5G07210.1	50.980	51	25	0	131	181	229	279	6.33e-11	60.8
MsaG016842	AT3G46640.2	52.941	51	24	0	131	181	143	193	2.09e-12	64.7
MsaG016842	AT3G46640.1	52.941	51	24	0	131	181	143	193	2.09e-12	64.7
MsaG016842	AT3G46640.3	52.941	51	24	0	131	181	143	193	2.12e-12	64.7
MsaG016842	AT2G20570.1	56.863	51	22	0	131	181	152	202	2.36e-12	64.7
MsaG016842	AT2G20570.2	62.222	45	17	0	137	181	174	218	4.35e-12	63.9
MsaG016842	AT5G05090.1	49.020	51	26	0	131	181	80	130	1.57e-11	61.6
MsaG016842	AT3G10760.1	49.020	51	26	0	131	181	104	154	1.89e-11	62.0

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTCCTTCTCTCTTGCTTT+TGG	0.205158	3:+102751664	MsaT016842.1:CDS
CTTGAAACTGTTAATCAGTT+AGG	0.311031	3:+102752425	MsaT016842.1:CDS
GCTCCACAGACCAAACAAAC+TGG	0.386812	3:-102752388	None:intergenic
TCTGCTGAAACCTGTGAGAT+TGG	0.389884	3:+102752319	MsaT016842.1:CDS
TGGAGGAACTAAGGAACATT+TGG	0.394946	3:+102752339	MsaT016842.1:CDS
ATAAGAAGTCCCAGTTTGTT+TGG	0.408211	3:+102752378	MsaT016842.1:CDS
ACATTTGGCAGCATGTAATT+CGG	0.438242	3:+102752354	MsaT016842.1:CDS
TGTTATTGCTTTACTAGTTG+TGG	0.457990	3:-102751980	None:intergenic
GGAACTTGTAGGACTTGAAA+TGG	0.458110	3:+102752092	MsaT016842.1:CDS
AGCTTGAGTCCATCCATGTC+AGG	0.472593	3:-102752066	None:intergenic
CAGAAAATCACGGGCACCAT+GGG	0.476586	3:-102752300	None:intergenic
AGACGTGGCGACCCATCTCC+AGG	0.480850	3:+102752594	MsaT016842.1:CDS
CTTAGTTCCTCCAATCTCAC+AGG	0.481151	3:-102752329	None:intergenic
CTGTGAGATTGGAGGAACTA+AGG	0.487418	3:+102752330	MsaT016842.1:CDS
ACTAGAAAAGTGCCTGGAGA+TGG	0.493120	3:-102752606	None:intergenic
GTCCCAGTTTGTTTGGTCTG+TGG	0.493912	3:+102752385	MsaT016842.1:CDS
CTCAAGCTGCTGGAACTTGT+AGG	0.500097	3:+102752081	MsaT016842.1:CDS
TGATACGGAGCTGGTGATGA+AGG	0.507591	3:+102752271	MsaT016842.1:CDS
CATGGATGGACTCAAGCTGC+TGG	0.519635	3:+102752071	MsaT016842.1:CDS
TGTGAACTTCAGCGATTACC+AGG	0.522457	3:-102752041	None:intergenic
CTAGAAAAGTGCCTGGAGAT+GGG	0.532146	3:-102752605	None:intergenic
CTCGCCAACTTACTTATGAC+AGG	0.542488	3:-102752120	None:intergenic
CTCCACAGACCAAACAAACT+GGG	0.546619	3:-102752387	None:intergenic
TCCACTGATCGGTTTCCCAT+CGG	0.547632	3:+102751614	MsaT016842.1:CDS
AGCGAGAACACGCATTCCGA+TGG	0.550357	3:-102751630	None:intergenic
TAAAGGACTAGAAAAGTGCC+TGG	0.553641	3:-102752612	None:intergenic
TGAATGTTGAAAATATTACA+AGG	0.562722	3:+102752569	MsaT016842.1:CDS
GCTGAAACCTGTGAGATTGG+AGG	0.565413	3:+102752322	MsaT016842.1:CDS
TCCAAAAGCAAGAGAGAAGG+AGG	0.572741	3:-102751665	None:intergenic
GTTGTCTGTATATAGTGATA+CGG	0.576810	3:+102752256	MsaT016842.1:CDS
GACCGTGGTATTGACATGAT+CGG	0.585397	3:-102751697	None:intergenic
CAGGTTTCAGCAGAAAATCA+CGG	0.587467	3:-102752310	None:intergenic
TAACAGTTTCAAGAAACTTG+CGG	0.590533	3:-102752415	None:intergenic
GTTTCCAAAAGCAAGAGAGA+AGG	0.592241	3:-102751668	None:intergenic
GCAGAAAATCACGGGCACCA+TGG	0.594928	3:-102752301	None:intergenic
TGTATATAGTGATACGGAGC+TGG	0.596919	3:+102752262	MsaT016842.1:CDS
TAATGGATGATTCCACTGAT+CGG	0.598611	3:+102751603	None:intergenic
TCCGATGGGAAACCGATCAG+TGG	0.602032	3:-102751615	None:intergenic
AGGTTTCAGCAGAAAATCAC+GGG	0.606322	3:-102752309	None:intergenic
GCGAGAACACGCATTCCGAT+GGG	0.611220	3:-102751629	None:intergenic
GTTCACATGCCTGACATGGA+TGG	0.616361	3:+102752057	MsaT016842.1:CDS
GTGATGAAGGCAATTTCCCA+TGG	0.624988	3:+102752284	MsaT016842.1:CDS
TGAAGTTCACATGCCTGACA+TGG	0.628648	3:+102752053	MsaT016842.1:CDS
GAATGTTGAAAATATTACAA+GGG	0.643931	3:+102752570	MsaT016842.1:CDS
AAATATTACAAGGGAAGACG+TGG	0.654849	3:+102752579	MsaT016842.1:CDS
AAACATAGACATGTTTGACC+TGG	0.663608	3:+102752023	MsaT016842.1:CDS
CGTGGTATTGACATGATCGG+AGG	0.677686	3:-102751694	None:intergenic
CTCCGATCATGTCAATACCA+CGG	0.680497	3:+102751695	MsaT016842.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	102751605	102752627	102751605	ID=MsaG016842
Chr3	mRNA	102751605	102752627	102751605	ID=MsaT016842.1;Parent=MsaG016842
Chr3	exon	102751605	102751716	102751605	ID=MsaT016842.1.exon1;Parent=MsaT016842.1
Chr3	CDS	102751605	102751716	102751605	ID=cds.MsaT016842.1;Parent=MsaT016842.1
Chr3	exon	102751977	102752129	102751977	ID=MsaT016842.1.exon2;Parent=MsaT016842.1
Chr3	CDS	102751977	102752129	102751977	ID=cds.MsaT016842.1;Parent=MsaT016842.1
Chr3	exon	102752255	102752455	102752255	ID=MsaT016842.1.exon3;Parent=MsaT016842.1
Chr3	CDS	102752255	102752455	102752255	ID=cds.MsaT016842.1;Parent=MsaT016842.1
Chr3	exon	102752539	102752627	102752539	ID=MsaT016842.1.exon4;Parent=MsaT016842.1
Chr3	CDS	102752539	102752627	102752539	ID=cds.MsaT016842.1;Parent=MsaT016842.1

Gene Sequence

>MsaT016842.1

ATGGATGATTCCACTGATCGGTTTCCCATCGGAATGCGTGTTCTCGCTGTCGACGACGATCCTCCTTCTCTCTTGCTTTTGGAAACTCTCCTCCGATCATGTCAATACCACGTAACCACAACTAGTAAAGCAATAACAGCATTGACTATGTTGCGAGAAAACATAGACATGTTTGACCTGGTAATCGCTGAAGTTCACATGCCTGACATGGATGGACTCAAGCTGCTGGAACTTGTAGGACTTGAAATGGATCTTCCTGTCATAACGTTGTCTGTATATAGTGATACGGAGCTGGTGATGAAGGCAATTTCCCATGGTGCCCGTGATTTTCTGCTGAAACCTGTGAGATTGGAGGAACTAAGGAACATTTGGCAGCATGTAATTCGGAATAAGAAGTCCCAGTTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTCTTGAAACTGTTAATCAGTTAGGAGTTGACAAGGCTGTACCCAAAAAGATTTTTGGTTTGATGAATGTTGAAAATATTACAAGGGAAGACGTGGCGACCCATCTCCAGGCACTTTTCTAG

Protein sequence

>MsaT016842.1

MDDSTDRFPIGMRVLAVDDDPPSLLLLETLLRSCQYHVTTTSKAITALTMLRENIDMFDLVIAEVHMPDMDGLKLLELVGLEMDLPVITLSVYSDTELVMKAISHGARDFLLKPVRLEELRNIWQHVIRNKKSQFVWSVELHRKFLETVNQLGVDKAVPKKIFGLMNVENITREDVATHLQALF*