AlfalfaGEDB | MsaG016842

M. sativa ssp. caerulea / MsaG016842

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	KEH35774.1	92.935	184	13	0	1	184	1	184	1.23e-114	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	sp\|O49397\|ARR10_ARATH	53.125	224	59	1	6	183	11	234	4.71e-73	232

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	tr\|A0A072V176\|A0A072V176_MEDTR	92.935	184	13	0	1	184	1	184	5.90e-115	333

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TFs/TRs:

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Gene ID	Type	Classification
MsaG016842	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000356	MsaG016842	0.836759	1.418930e-56	5.010594e-54
MsaG000457	MsaG016842	0.811387	1.231393e-50	2.175359e-48
MsaG002836	MsaG016842	0.887936	2.006507e-72	5.319794e-69
MsaG003330	MsaG016842	0.803938	4.625820e-49	6.842454e-47
MsaG005663	MsaG016842	0.812476	7.152138e-51	1.297845e-48
MsaG006203	MsaG016842	0.827141	3.287073e-54	8.774833e-52
MsaG007263	MsaG016842	0.821590	6.546384e-53	1.501649e-50
MsaG007848	MsaG016842	0.860382	4.224237e-63	3.333166e-60
MsaG007852	MsaG016842	0.855178	1.452668e-61	9.444740e-59
MsaG008287	MsaG016842	0.845230	8.671923e-59	4.003650e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	MtrunA17_Chr3g0134481	92.935	184	13	0	1	184	1	184	1.14e-118	333
MsaG016842	MtrunA17_Chr3g0134461	73.846	195	40	2	1	184	1	195	2.24e-89	259
MsaG016842	MtrunA17_Chr3g0137101	84.211	133	21	0	1	133	1	133	1.87e-74	235
MsaG016842	MtrunA17_Chr3g0137101	76.471	51	12	0	131	181	197	247	1.50e-20	88.2
MsaG016842	MtrunA17_Chr2g0294911	43.404	235	75	2	5	181	26	260	7.11e-61	199
MsaG016842	MtrunA17_Chr3g0123131	45.339	236	67	2	8	181	13	248	1.99e-60	197
MsaG016842	MtrunA17_Chr8g0376881	45.763	236	68	2	6	181	23	258	7.69e-60	194
MsaG016842	MtrunA17_Chr2g0304841	67.424	132	43	0	2	133	12	143	4.61e-58	192
MsaG016842	MtrunA17_Chr2g0304841	66.667	51	17	0	131	181	212	262	2.38e-16	76.3
MsaG016842	MtrunA17_Chr1g0149841	69.767	129	39	0	5	133	2	130	2.13e-57	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016842	AT4G31920.1	53.125	224	59	1	6	183	11	234	4.78e-74	232
MsaG016842	AT2G25180.1	68.217	129	41	0	3	131	8	136	2.83e-59	194
MsaG016842	AT2G25180.1	66.667	51	17	0	131	181	194	244	3.24e-17	79.0
MsaG016842	AT3G16857.1	54.861	144	63	1	8	151	33	174	2.80e-50	172
MsaG016842	AT3G16857.1	68.627	51	16	0	131	181	236	286	1.29e-16	77.4
MsaG016842	AT1G67710.1	43.644	236	70	5	9	181	8	243	2.88e-50	169
MsaG016842	AT3G16857.2	54.110	146	65	1	6	151	31	174	4.00e-50	171
MsaG016842	AT3G16857.2	68.627	51	16	0	131	181	236	286	1.65e-16	77.0
MsaG016842	AT5G58080.1	63.158	133	47	2	2	133	8	139	1.58e-45	158
MsaG016842	AT5G58080.1	64.706	51	18	0	131	181	193	243	5.85e-16	75.5

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Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAGACATGTTTGACC+TGG	0.663608	3:+102752023	MsaT016842.1:CDS
AAATATTACAAGGGAAGACG+TGG	0.654849	3:+102752579	MsaT016842.1:CDS
ACATTTGGCAGCATGTAATT+CGG	0.438242	3:+102752354	MsaT016842.1:CDS
ACTAGAAAAGTGCCTGGAGA+TGG	0.493120	3:-102752606	None:intergenic
AGACGTGGCGACCCATCTCC+AGG	0.480850	3:+102752594	MsaT016842.1:CDS
AGCGAGAACACGCATTCCGA+TGG	0.550357	3:-102751630	None:intergenic
AGCTTGAGTCCATCCATGTC+AGG	0.472593	3:-102752066	None:intergenic
AGGTTTCAGCAGAAAATCAC+GGG	0.606322	3:-102752309	None:intergenic
ATAAGAAGTCCCAGTTTGTT+TGG	0.408211	3:+102752378	MsaT016842.1:CDS
CAGAAAATCACGGGCACCAT+GGG	0.476586	3:-102752300	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	102751605	102752627	102751605	ID=MsaG016842
Chr3	mRNA	102751605	102752627	102751605	ID=MsaT016842.1;Parent=MsaG016842
Chr3	exon	102751605	102751716	102751605	ID=MsaT016842.1.exon1;Parent=MsaT016842.1
Chr3	CDS	102751605	102751716	102751605	ID=cds.MsaT016842.1;Parent=MsaT016842.1
Chr3	exon	102751977	102752129	102751977	ID=MsaT016842.1.exon2;Parent=MsaT016842.1
Chr3	CDS	102751977	102752129	102751977	ID=cds.MsaT016842.1;Parent=MsaT016842.1
Chr3	exon	102752255	102752455	102752255	ID=MsaT016842.1.exon3;Parent=MsaT016842.1
Chr3	CDS	102752255	102752455	102752255	ID=cds.MsaT016842.1;Parent=MsaT016842.1
Chr3	exon	102752539	102752627	102752539	ID=MsaT016842.1.exon4;Parent=MsaT016842.1
Chr3	CDS	102752539	102752627	102752539	ID=cds.MsaT016842.1;Parent=MsaT016842.1

Gene Sequence

>MsaT016842.1

ATGGATGATTCCACTGATCGGTTTCCCATCGGAATGCGTGTTCTCGCTGTCGACGACGATCCTCCTTCTCTCTTGCTTTTGGAAACTCTCCTCCGATCATGTCAATACCACGTAACCACAACTAGTAAAGCAATAACAGCATTGACTATGTTGCGAGAAAACATAGACATGTTTGACCTGGTAATCGCTGAAGTTCACATGCCTGACATGGATGGACTCAAGCTGCTGGAACTTGTAGGACTTGAAATGGATCTTCCTGTCATAACGTTGTCTGTATATAGTGATACGGAGCTGGTGATGAAGGCAATTTCCCATGGTGCCCGTGATTTTCTGCTGAAACCTGTGAGATTGGAGGAACTAAGGAACATTTGGCAGCATGTAATTCGGAATAAGAAGTCCCAGTTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTCTTGAAACTGTTAATCAGTTAGGAGTTGACAAGGCTGTACCCAAAAAGATTTTTGGTTTGATGAATGTTGAAAATATTACAAGGGAAGACGTGGCGACCCATCTCCAGGCACTTTTCTAG

Protein sequence

>MsaT016842.1

MDDSTDRFPIGMRVLAVDDDPPSLLLLETLLRSCQYHVTTTSKAITALTMLRENIDMFDLVIAEVHMPDMDGLKLLELVGLEMDLPVITLSVYSDTELVMKAISHGARDFLLKPVRLEELRNIWQHVIRNKKSQFVWSVELHRKFLETVNQLGVDKAVPKKIFGLMNVENITREDVATHLQALF*