AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG016844

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016844 MtrunA17_Chr3g0134451 96.226 318 12 0 1 318 1 318 0.0 640
MsaG016844 MtrunA17_Chr5g0425191 80.328 61 12 0 1 61 1 61 1.11e-29 109
MsaG016844 MtrunA17_Chr4g0060841 29.528 254 145 7 1 230 1 244 1.36e-28 113
MsaG016844 MtrunA17_Chr4g0044071 77.049 61 14 0 1 61 1 61 1.26e-27 103
MsaG016844 MtrunA17_Chr3g0097101 62.857 70 25 1 1 70 16 84 6.41e-23 95.5
MsaG016844 MtrunA17_Chr8g0351041 65.714 70 23 1 1 70 1 69 6.76e-23 93.2
MsaG016844 MtrunA17_Chr3g0077501 64.286 70 24 1 1 70 1 69 8.34e-23 94.4
MsaG016844 MtrunA17_Chr8g0351031 65.714 70 23 1 1 70 1 69 1.36e-22 94.0
MsaG016844 MtrunA17_Chr2g0284911 62.857 70 25 1 1 70 16 84 1.50e-22 94.7
MsaG016844 MtrunA17_Chr8g0380021 62.857 70 25 1 1 70 17 85 2.49e-22 93.6
MsaG016844 MtrunA17_Chr4g0049541 36.095 169 80 3 1 169 1 141 3.00e-22 92.8
MsaG016844 MtrunA17_Chr5g0412461 68.571 70 21 1 1 70 1 69 4.75e-22 92.4
MsaG016844 MtrunA17_Chr5g0412271 68.571 70 21 1 1 70 1 69 6.59e-22 92.0
MsaG016844 MtrunA17_Chr7g0246431 61.429 70 26 1 1 70 1 69 1.14e-21 91.3
MsaG016844 MtrunA17_Chr8g0366231 55.128 78 35 0 1 78 1 78 1.22e-21 91.7
MsaG016844 MtrunA17_Chr4g0061691 36.686 169 81 3 1 169 1 143 1.36e-21 91.3
MsaG016844 MtrunA17_Chr5g0420091 57.143 70 30 0 1 70 1 70 1.53e-21 90.9
MsaG016844 MtrunA17_Chr4g0057151 53.261 92 38 2 1 88 1 91 2.62e-21 90.1
MsaG016844 MtrunA17_Chr4g0061671 57.143 70 30 0 1 70 1 70 3.68e-21 89.0
MsaG016844 MtrunA17_Chr2g0279821 36.047 172 82 4 1 172 1 144 3.73e-21 90.5
MsaG016844 MtrunA17_Chr1g0173161 60.870 69 27 0 1 69 1 69 3.87e-21 85.9
MsaG016844 MtrunA17_Chr3g0122251 60.000 70 28 0 1 70 1 70 4.30e-21 90.5
MsaG016844 MtrunA17_Chr5g0420081 55.128 78 35 0 1 78 1 78 7.46e-21 89.4
MsaG016844 MtrunA17_Chr5g0417661 59.016 61 25 0 1 61 56 116 9.00e-21 86.3
MsaG016844 MtrunA17_Chr6g0455511 58.571 70 29 0 1 70 1 70 9.68e-21 89.4
MsaG016844 MtrunA17_Chr7g0220111 57.143 70 30 0 1 70 1 70 1.12e-20 89.4
MsaG016844 MtrunA17_Chr7g0246381 61.290 62 24 0 1 62 1 62 1.33e-20 84.0
MsaG016844 MtrunA17_Chr7g0220121 36.686 169 79 4 1 169 1 141 2.12e-20 88.6
MsaG016844 MtrunA17_Chr8g0351051 60.000 70 27 1 1 70 1 69 4.70e-20 87.8
MsaG016844 MtrunA17_Chr6g0474371 55.714 70 31 0 1 70 1 70 9.61e-20 85.5
MsaG016844 MtrunA17_Chr5g0411691 55.714 70 30 1 1 70 1 69 1.28e-19 86.3
MsaG016844 MtrunA17_Chr1g0164791 56.338 71 30 1 1 70 1 71 1.39e-19 85.9
MsaG016844 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 1.45e-19 82.0
MsaG016844 MtrunA17_Chr2g0308251 61.667 60 23 0 1 60 1 60 1.91e-19 81.6
MsaG016844 MtrunA17_Chr3g0142191 42.400 125 62 4 1 118 1 122 2.68e-19 85.1
MsaG016844 MtrunA17_Chr1g0208561 45.098 102 53 3 2 101 9 109 2.88e-19 85.1
MsaG016844 MtrunA17_Chr3g0089141 45.098 102 53 3 2 101 9 109 6.78e-19 84.0
MsaG016844 MtrunA17_Chr1g0208581 45.098 102 53 3 2 101 9 109 1.53e-18 82.8
MsaG016844 MtrunA17_Chr5g0427921 57.377 61 26 0 1 61 1 61 1.73e-18 78.2
MsaG016844 MtrunA17_Chr3g0125241 54.930 71 31 1 1 70 26 96 2.35e-18 82.0
MsaG016844 MtrunA17_Chr4g0020221 52.632 76 35 1 1 76 1 75 2.88e-18 82.8
MsaG016844 MtrunA17_Chr8g0379021 54.930 71 31 1 2 72 12 81 3.57e-18 80.9
MsaG016844 MtrunA17_Chr5g0427401 52.857 70 32 1 1 70 1 69 8.53e-18 80.9
MsaG016844 MtrunA17_Chr5g0404951 50.515 97 45 3 1 95 1 96 9.79e-18 80.9
MsaG016844 MtrunA17_Chr1g0206701 43.269 104 56 3 2 103 9 111 1.79e-17 80.1
MsaG016844 MtrunA17_Chr4g0049901 35.036 137 77 4 1 126 27 162 2.32e-17 80.1
MsaG016844 MtrunA17_Chr8g0355091 31.176 170 95 5 2 165 9 162 2.91e-17 79.7
MsaG016844 MtrunA17_Chr4g0018421 46.575 73 39 0 1 73 1 73 3.06e-17 79.0
MsaG016844 MtrunA17_Chr3g0099421 44.231 104 55 3 2 103 34 136 3.45e-17 79.7
MsaG016844 MtrunA17_Chr3g0099411 42.308 104 57 3 2 103 9 111 3.79e-17 79.0
MsaG016844 MtrunA17_Chr1g0159661 41.176 102 58 2 1 101 1 101 5.54e-17 77.4
MsaG016844 MtrunA17_Chr2g0333981 36.806 144 67 5 1 141 11 133 7.91e-17 77.0
MsaG016844 MtrunA17_Chr1g0204111 54.286 70 31 1 1 70 17 85 8.55e-17 78.6
MsaG016844 MtrunA17_Chr2g0292791 36.567 134 66 5 2 133 9 125 1.11e-16 78.2
MsaG016844 MtrunA17_Chr1g0206721 42.157 102 56 3 2 101 9 109 1.20e-16 77.8
MsaG016844 MtrunA17_Chr2g0317451 45.556 90 47 2 2 90 9 97 4.22e-16 76.3
MsaG016844 MtrunA17_Chr2g0317481 45.556 90 47 2 2 90 9 97 4.65e-16 76.3
MsaG016844 MtrunA17_Chr2g0325971 40.196 102 58 2 2 101 9 109 4.71e-16 75.9
MsaG016844 MtrunA17_Chr6g0457851 28.662 157 96 4 1 141 11 167 4.98e-16 77.8
MsaG016844 MtrunA17_Chr4g0052061 33.858 127 75 3 1 119 1 126 5.54e-16 74.3
MsaG016844 MtrunA17_Chr1g0206991 37.008 127 72 4 2 126 9 129 6.04e-16 74.7
MsaG016844 MtrunA17_Chr1g0149391 42.308 104 57 3 2 103 9 111 9.10e-16 75.5
MsaG016844 MtrunA17_Chr5g0419601 49.315 73 36 1 1 73 8 79 9.56e-16 75.5
MsaG016844 MtrunA17_Chr1g0188671 43.810 105 56 3 2 104 47 150 1.14e-15 75.9
MsaG016844 MtrunA17_Chr1g0187361 41.905 105 58 2 2 104 9 112 2.27e-15 74.3
MsaG016844 MtrunA17_Chr1g0166611 50.000 68 31 1 13 77 17 84 3.93e-15 71.2
MsaG016844 MtrunA17_Chr3g0119901 38.835 103 60 2 1 101 8 109 5.03e-15 72.8
MsaG016844 MtrunA17_Chr1g0212151 34.862 109 63 3 1 101 1 109 6.91e-15 74.3
MsaG016844 MtrunA17_Chr1g0175611 45.205 73 39 1 1 73 1 72 9.03e-15 71.2
MsaG016844 MtrunA17_Chr2g0300421 42.718 103 54 4 2 101 9 109 1.16e-14 70.9
MsaG016844 MtrunA17_Chr3g0085241 46.250 80 41 2 1 79 40 118 1.19e-14 72.4
MsaG016844 MtrunA17_Chr8g0376821 45.070 71 38 1 1 71 1 70 1.89e-14 70.5
MsaG016844 MtrunA17_Chr3g0089151 48.571 70 35 1 2 71 9 77 2.16e-14 68.9
MsaG016844 MtrunA17_Chr4g0074101 37.302 126 69 4 1 121 1 121 2.21e-14 70.9
MsaG016844 MtrunA17_Chr4g0018951 58.621 58 23 1 15 72 25 81 2.62e-14 69.7
MsaG016844 MtrunA17_Chr4g0052081 44.444 72 39 1 1 72 1 71 2.71e-14 70.1
MsaG016844 MtrunA17_Chr8g0357771 32.667 150 80 6 1 139 1 140 2.73e-14 70.1
MsaG016844 MtrunA17_Chr1g0169761 45.070 71 38 1 1 71 1 70 5.47e-14 69.3
MsaG016844 MtrunA17_Chr2g0300441 42.718 103 54 4 2 101 9 109 9.52e-14 69.7
MsaG016844 MtrunA17_Chr5g0422421 47.887 71 36 1 2 72 9 78 1.12e-13 69.3
MsaG016844 MtrunA17_Chr5g0422941 47.887 71 36 1 2 72 9 78 1.40e-13 69.3
MsaG016844 MtrunA17_Chr1g0206691 40.000 95 54 3 11 103 1 94 1.81e-13 68.6
MsaG016844 MtrunA17_Chr1g0180591 41.096 73 42 1 1 73 1 72 2.76e-13 67.4
MsaG016844 MtrunA17_Chr1g0175601 39.759 83 49 1 1 83 1 82 4.65e-13 66.6
MsaG016844 MtrunA17_Chr6g0449851 32.110 109 66 3 1 101 1 109 2.54e-12 66.6
MsaG016844 MtrunA17_Chr8g0356071 42.254 71 40 1 1 71 1 70 2.64e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016844 AT1G22130.1 43.290 231 108 3 1 209 1 230 1.95e-52 176
MsaG016844 AT1G77980.1 41.631 233 112 2 1 209 1 233 1.11e-51 174
MsaG016844 AT1G77950.3 42.308 234 110 5 1 212 1 231 2.32e-48 162
MsaG016844 AT1G77950.2 42.308 234 110 5 1 212 1 231 2.32e-48 162
MsaG016844 AT1G77950.1 42.308 234 110 5 1 212 1 231 2.32e-48 162
MsaG016844 AT1G77950.4 42.308 234 110 5 1 212 1 231 2.32e-48 162
MsaG016844 AT1G18750.4 30.544 239 128 6 1 211 1 229 1.06e-28 114
MsaG016844 AT4G37435.1 36.979 192 106 4 1 187 1 182 1.22e-28 109
MsaG016844 AT1G18750.1 30.544 239 128 6 1 211 1 229 1.31e-28 114
MsaG016844 AT1G69540.1 35.593 177 103 4 1 172 1 171 3.90e-27 109
MsaG016844 AT1G69540.2 35.593 177 103 4 1 172 1 171 4.82e-27 109
MsaG016844 AT1G18750.3 39.773 176 90 6 1 171 1 165 3.99e-26 107
MsaG016844 AT2G03060.2 33.898 177 106 5 1 172 1 171 6.62e-26 106
MsaG016844 AT2G03060.3 33.898 177 106 5 1 172 1 171 7.02e-26 106
MsaG016844 AT2G03060.7 33.898 177 106 5 1 172 1 171 7.02e-26 106
MsaG016844 AT2G03060.1 33.898 177 106 5 1 172 1 171 7.02e-26 106
MsaG016844 AT4G09960.2 64.286 70 24 1 1 70 1 69 5.40e-23 95.1
MsaG016844 AT4G09960.6 64.286 70 24 1 1 70 2 70 7.37e-23 95.1
MsaG016844 AT4G09960.1 64.286 70 24 1 1 70 1 69 7.68e-23 95.1
MsaG016844 AT3G54340.1 35.242 227 119 8 1 213 1 213 8.25e-23 95.1
MsaG016844 AT4G11880.2 62.857 70 26 0 1 70 1 70 9.88e-23 93.6
MsaG016844 AT4G11880.3 62.857 70 26 0 1 70 1 70 9.88e-23 93.6
MsaG016844 AT3G58780.3 34.302 172 111 1 1 172 16 185 1.05e-22 95.9
MsaG016844 AT4G09960.5 64.286 70 24 1 1 70 11 79 1.08e-22 95.1
MsaG016844 AT4G09960.3 64.286 70 24 1 1 70 27 95 1.66e-22 94.7
MsaG016844 AT4G11880.4 62.857 70 26 0 1 70 1 70 2.33e-22 93.6
MsaG016844 AT4G11880.1 62.857 70 26 0 1 70 1 70 2.33e-22 93.6
MsaG016844 AT4G18960.1 65.217 69 23 1 2 70 18 85 2.78e-22 94.0
MsaG016844 AT5G62165.6 38.150 173 78 4 1 172 1 145 2.98e-22 91.3
MsaG016844 AT5G62165.9 38.150 173 78 4 1 172 1 145 2.98e-22 91.3
MsaG016844 AT5G62165.7 38.150 173 78 4 1 172 1 145 2.98e-22 91.3
MsaG016844 AT5G62165.8 38.150 173 78 4 1 172 1 145 2.98e-22 91.3
MsaG016844 AT5G62165.13 38.150 173 78 4 1 172 1 145 2.98e-22 91.3
MsaG016844 AT1G69120.2 35.465 172 85 2 1 172 1 146 4.32e-22 93.2
MsaG016844 AT4G09960.4 64.286 70 24 1 1 70 96 164 5.60e-22 94.7
MsaG016844 AT2G42830.1 36.095 169 81 3 1 169 16 157 6.12e-22 93.2
MsaG016844 AT3G58780.4 35.260 173 85 3 1 173 16 161 6.32e-22 94.0
MsaG016844 AT2G42830.2 36.095 169 81 3 1 169 16 157 7.04e-22 92.8
MsaG016844 AT3G58780.1 61.429 70 26 1 1 70 16 84 7.48e-22 92.8
MsaG016844 AT3G58780.5 61.429 70 26 1 1 70 22 90 8.91e-22 92.8
MsaG016844 AT5G62165.17 42.336 137 62 4 1 132 1 125 9.97e-22 90.1
MsaG016844 AT5G62165.12 42.336 137 62 4 1 132 1 125 9.97e-22 90.1
MsaG016844 AT5G62165.11 42.336 137 62 4 1 132 1 125 9.97e-22 90.1
MsaG016844 AT3G57390.3 64.286 70 24 1 1 70 1 69 1.05e-21 92.0
MsaG016844 AT3G57230.2 60.000 70 27 1 1 70 1 69 1.12e-21 89.7
MsaG016844 AT1G69120.1 35.465 172 85 2 1 172 1 146 1.24e-21 92.4
MsaG016844 AT5G60910.1 60.000 70 28 0 1 70 1 70 1.41e-21 92.0
MsaG016844 AT3G57390.1 64.286 70 24 1 1 70 1 69 1.65e-21 92.0
MsaG016844 AT5G62165.14 61.429 70 26 1 1 70 1 69 2.29e-21 87.8
MsaG016844 AT3G30260.1 58.571 70 29 0 1 70 1 70 2.30e-21 91.7
MsaG016844 AT5G51870.2 46.602 103 52 2 1 103 1 100 2.60e-21 89.4
MsaG016844 AT2G45650.1 62.857 70 25 1 1 70 1 69 2.62e-21 91.7
MsaG016844 AT2G45660.2 57.746 71 29 1 1 71 1 70 3.05e-21 89.0
MsaG016844 AT3G58780.2 65.574 61 21 0 1 61 16 76 3.60e-21 90.9
MsaG016844 AT1G26310.1 35.465 172 87 2 1 172 1 148 3.74e-21 91.3
MsaG016844 AT5G10140.2 60.000 70 28 0 1 70 1 70 4.22e-21 89.0
MsaG016844 AT1G24260.3 60.000 70 28 0 1 70 1 70 5.10e-21 90.5
MsaG016844 AT3G57230.1 60.000 70 27 1 1 70 1 69 5.14e-21 90.5
MsaG016844 AT3G57230.4 60.000 70 27 1 1 70 1 69 5.14e-21 90.5
MsaG016844 AT5G62165.10 42.336 137 62 4 1 132 1 125 5.25e-21 89.4
MsaG016844 AT5G62165.4 42.336 137 62 4 1 132 1 125 5.25e-21 89.4
MsaG016844 AT4G24540.1 43.750 128 61 4 1 119 1 126 5.62e-21 89.7
MsaG016844 AT5G10140.4 60.000 70 28 0 1 70 1 70 5.86e-21 89.0
MsaG016844 AT5G10140.1 60.000 70 28 0 1 70 1 70 5.94e-21 89.4
MsaG016844 AT5G10140.3 60.000 70 28 0 1 70 1 70 5.99e-21 89.0
MsaG016844 AT2G45660.1 32.759 174 90 3 1 174 1 147 6.08e-21 89.7
MsaG016844 AT5G62165.3 42.336 137 62 4 1 132 1 125 6.12e-21 89.4
MsaG016844 AT5G62165.1 42.336 137 62 4 1 132 1 125 6.12e-21 89.4
MsaG016844 AT5G62165.2 42.336 137 62 4 1 132 1 125 6.12e-21 89.4
MsaG016844 AT1G24260.1 60.000 70 28 0 1 70 1 70 6.27e-21 90.5
MsaG016844 AT5G51870.1 46.602 103 52 2 1 103 1 100 6.56e-21 89.4
MsaG016844 AT1G24260.2 60.000 70 28 0 1 70 1 70 6.71e-21 90.5
MsaG016844 AT5G51870.5 46.602 103 52 2 1 103 24 123 6.84e-21 89.0
MsaG016844 AT5G51870.4 46.602 103 52 2 1 103 1 100 1.46e-20 88.6
MsaG016844 AT5G51870.3 46.602 103 52 2 1 103 11 110 1.84e-20 88.6
MsaG016844 AT3G02310.2 58.571 70 29 0 1 70 1 70 2.04e-20 87.8
MsaG016844 AT3G61120.1 44.660 103 54 2 1 101 1 102 2.48e-20 88.6
MsaG016844 AT4G22950.2 60.000 70 27 1 1 70 1 69 2.67e-20 86.7
MsaG016844 AT3G02310.1 34.595 185 87 3 1 180 1 156 3.41e-20 88.6
MsaG016844 AT5G15800.1 57.143 70 30 0 1 70 1 70 4.38e-20 88.2
MsaG016844 AT2G22540.3 39.844 128 66 3 1 119 1 126 5.88e-20 87.4
MsaG016844 AT2G22540.1 39.844 128 66 3 1 119 1 126 5.88e-20 87.4
MsaG016844 AT5G15800.2 57.143 70 30 0 1 70 1 70 5.92e-20 87.8
MsaG016844 AT5G23260.3 47.115 104 45 3 1 98 1 100 7.14e-20 87.4
MsaG016844 AT5G23260.2 47.115 104 45 3 1 98 1 100 8.49e-20 87.4
MsaG016844 AT4G22950.3 60.000 70 27 1 1 70 1 69 1.27e-19 86.3
MsaG016844 AT4G22950.1 60.000 70 27 1 1 70 1 69 1.27e-19 86.3
MsaG016844 AT5G23260.1 47.115 104 45 3 1 98 17 116 1.31e-19 87.0
MsaG016844 AT5G23260.4 47.115 104 45 3 1 98 17 116 1.36e-19 87.0
MsaG016844 AT5G65070.4 55.714 70 31 0 1 70 1 70 1.79e-19 84.0
MsaG016844 AT4G37940.4 31.844 179 94 3 1 179 1 151 2.08e-19 85.5
MsaG016844 AT5G13790.2 51.807 83 39 1 1 83 1 82 2.86e-19 86.3
MsaG016844 AT5G65070.1 55.714 70 31 0 1 70 1 70 3.44e-19 84.3
MsaG016844 AT1G71692.1 46.835 79 42 0 1 79 1 79 4.49e-19 84.3
MsaG016844 AT2G22540.2 39.844 128 61 4 1 119 1 121 4.53e-19 85.1
MsaG016844 AT5G13790.1 56.944 72 30 1 1 72 1 71 6.83e-19 85.1
MsaG016844 AT5G65070.5 55.714 70 31 0 1 70 1 70 9.21e-19 83.6
MsaG016844 AT5G65070.2 55.714 70 31 0 1 70 1 70 9.41e-19 84.0
MsaG016844 AT2G03710.3 63.158 57 21 0 1 57 1 57 1.24e-18 82.8
MsaG016844 AT4G37940.3 32.544 169 86 3 1 169 1 141 1.34e-18 82.0
MsaG016844 AT4G37940.1 32.558 172 88 3 1 172 1 144 1.46e-18 83.6
MsaG016844 AT2G03710.1 63.158 57 21 0 1 57 1 57 3.20e-18 83.2
MsaG016844 AT2G03710.2 63.158 57 21 0 1 57 1 57 3.24e-18 83.2
MsaG016844 AT2G14210.1 34.884 172 85 2 1 172 1 145 4.29e-18 82.4
MsaG016844 AT2G14210.2 34.884 172 85 2 1 172 1 145 6.14e-18 82.0
MsaG016844 AT5G51860.2 57.143 70 29 1 1 70 1 69 8.38e-18 80.9
MsaG016844 AT5G51860.1 57.143 70 29 1 1 70 1 69 8.96e-18 80.9
MsaG016844 AT5G65070.3 57.576 66 27 1 1 65 1 66 5.12e-17 79.3
MsaG016844 AT5G20240.2 64.151 53 19 0 1 53 1 53 5.15e-17 77.0
MsaG016844 AT5G65050.2 48.571 70 36 0 1 70 1 70 6.42e-17 77.8
MsaG016844 AT2G34440.1 36.538 104 64 2 1 103 1 103 1.47e-16 76.6
MsaG016844 AT2G26320.1 48.101 79 40 1 1 78 17 95 1.51e-16 74.7
MsaG016844 AT5G20240.1 64.151 53 19 0 1 53 1 53 1.54e-16 77.4
MsaG016844 AT5G65050.1 48.571 70 36 0 1 70 1 70 2.53e-16 76.3
MsaG016844 AT5G65050.3 48.571 70 36 0 1 70 1 70 2.59e-16 76.6
MsaG016844 AT5G65050.5 48.571 70 36 0 1 70 1 70 2.86e-16 76.3
MsaG016844 AT1G31140.2 57.746 71 29 1 1 70 1 71 3.85e-16 76.3
MsaG016844 AT1G31140.1 57.746 71 29 1 1 70 1 71 4.40e-16 76.3
MsaG016844 AT2G22630.1 52.857 70 32 1 1 70 1 69 1.06e-15 75.5
MsaG016844 AT2G22630.2 52.857 70 32 1 1 70 1 69 1.06e-15 75.5
MsaG016844 AT2G24840.1 48.611 72 36 1 1 72 62 132 1.77e-15 75.5
MsaG016844 AT5G60440.1 30.890 191 116 6 2 188 7 185 2.64e-15 75.5
MsaG016844 AT5G65060.3 47.143 70 37 0 1 70 1 70 3.83e-15 73.2
MsaG016844 AT5G65060.2 47.143 70 37 0 1 70 1 70 4.28e-15 72.8
MsaG016844 AT5G65060.1 47.143 70 37 0 1 70 1 70 4.75e-15 72.8
MsaG016844 AT4G36590.1 46.988 83 42 2 2 84 7 87 5.62e-15 73.9
MsaG016844 AT3G66656.1 45.833 72 38 1 1 72 1 71 1.33e-14 71.2
MsaG016844 AT1G01530.1 48.529 68 34 1 1 68 6 72 1.56e-14 72.4
MsaG016844 AT5G65080.3 36.607 112 60 2 1 101 8 119 1.99e-14 71.2
MsaG016844 AT1G77080.11 52.857 70 33 0 1 70 1 70 9.11e-14 68.9
MsaG016844 AT1G77080.5 52.857 70 33 0 1 70 1 70 1.12e-13 68.6
MsaG016844 AT1G77080.4 52.857 70 33 0 1 70 1 70 1.96e-13 68.6
MsaG016844 AT1G77080.8 52.857 70 33 0 1 70 1 70 3.74e-13 68.2
MsaG016844 AT5G65080.2 36.937 111 60 2 1 101 8 118 1.08e-12 66.6
MsaG016844 AT1G28460.1 47.887 71 36 1 2 72 8 77 1.21e-12 65.9
MsaG016844 AT1G72350.1 48.571 70 33 1 2 71 43 109 2.61e-12 65.9
MsaG016844 AT1G65360.1 42.857 70 39 1 1 70 6 74 2.82e-12 65.9
MsaG016844 AT1G77080.12 70.000 40 12 0 1 40 1 40 5.40e-12 63.2
MsaG016844 AT1G77080.2 70.000 40 12 0 1 40 1 40 1.03e-11 63.5
MsaG016844 AT1G29962.1 43.662 71 39 1 2 72 8 77 1.50e-11 62.8
MsaG016844 AT1G47760.1 38.889 90 52 2 1 88 1 89 5.80e-11 61.2
MsaG016844 AT1G28450.1 28.070 171 115 5 2 168 8 174 8.95e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATTTATATATCGTTCT+AGG 0.235542 3:-102774760 None:intergenic
TACTCAGTTTGGACAGGTTA+TGG 0.296881 3:+102776322 MsaT016844.1:CDS
TGGGAGCACCTCCATCAATT+AGG 0.354954 3:+102776362 MsaT016844.1:CDS
TGGATACCAATTTGTCCTCT+TGG 0.364028 3:+102776342 MsaT016844.1:CDS
GGAACTACAGAGAATGTATT+AGG 0.368902 3:+102776008 MsaT016844.1:CDS
TACCTTCCACGTTCACTGTC+TGG 0.381164 3:-102774782 None:intergenic
TCAACTTTCTAAGCACCTTT+CGG 0.388464 3:-102775251 None:intergenic
GTGCTCCCAAGAGGACAAAT+TGG 0.392637 3:-102776348 None:intergenic
ACTGAGTACTGTTGTTGATA+TGG 0.393694 3:+102776199 MsaT016844.1:CDS
GGATACCAATTTGTCCTCTT+GGG 0.396151 3:+102776343 MsaT016844.1:CDS
GTCAGCCTCTGCAGCATCCC+TGG 0.400270 3:-102776282 None:intergenic
TGTATTAGGTTGGTTTCCTC+AGG 0.402453 3:+102776022 MsaT016844.1:CDS
TATTAACAAATACCTTTAGT+TGG 0.408282 3:-102775453 None:intergenic
ATTTATTTGCAAGTCTCAAT+TGG 0.411776 3:+102775584 MsaT016844.1:CDS
TCAAGTAAGTACCTAATTGA+TGG 0.427316 3:-102776373 None:intergenic
GATGTAGATGGATTTGTTGC+TGG 0.452248 3:+102775987 MsaT016844.1:CDS
AATACGCTAAGTACTCAGTT+TGG 0.454322 3:+102776311 MsaT016844.1:CDS
AGAAAGTACCTGAGAGGAGA+AGG 0.457235 3:-102776089 None:intergenic
TGTTTGAAGTTGACCATGAT+TGG 0.468690 3:-102776703 None:intergenic
AAAGTTCAGAATCTGATCAT+TGG 0.482587 3:-102776051 None:intergenic
CAAGTCTCAATTGGAAGAGA+TGG 0.484876 3:+102775593 MsaT016844.1:CDS
AATATCTTCATAACCAATCA+TGG 0.488832 3:+102776690 MsaT016844.1:CDS
CGACGTTTGCAGAGTTCAGA+AGG 0.490783 3:-102776238 None:intergenic
CTTACCACCCTTCTCCTCTC+AGG 0.492758 3:+102776081 MsaT016844.1:CDS
CTTGTCTCTGCAACTGACAA+TGG 0.498020 3:-102776621 None:intergenic
TTGGTTATGAAGATATTTGA+CGG 0.516471 3:-102776684 None:intergenic
AAGAGAGTGGCTCTCCCAGA+TGG 0.518657 3:-102774606 None:intergenic
AGTTGGAAGTCTGTAATCGT+AGG 0.521006 3:-102775436 None:intergenic
TCAGCCTCTGCAGCATCCCT+GGG 0.521110 3:-102776281 None:intergenic
ACTTTCTCAAAGAGAAGGAA+TGG 0.526970 3:+102774516 MsaT016844.1:CDS
CTACAGAGAATGTATTAGGT+TGG 0.528198 3:+102776012 MsaT016844.1:CDS
GTTCTATGTGATGTTGATGT+CGG 0.532669 3:+102774567 MsaT016844.1:CDS
ATCAGATATGCCAAGCTCCT+AGG 0.535164 3:+102775286 MsaT016844.1:CDS
AAGAGATGGAGAATCGACTA+AGG 0.538298 3:+102775607 MsaT016844.1:CDS
TGAGAACATAACAAATAGAC+AGG 0.539051 3:+102774491 MsaT016844.1:CDS
ATATCGTGAACAAGTCCTAC+AGG 0.539458 3:+102775810 MsaT016844.1:CDS
ACACTTGTCAAATTAGTCCC+AGG 0.549128 3:+102776264 MsaT016844.1:CDS
GTTGGAAGTCTGTAATCGTA+GGG 0.550926 3:-102775435 None:intergenic
CACAATGTGGTAATCTCTGA+AGG 0.551793 3:-102775778 None:intergenic
AGGAGAAGGGTGGTAAGCAT+TGG 0.553311 3:-102776075 None:intergenic
GCTAAGTACTCAGTTTGGAC+AGG 0.561721 3:+102776316 MsaT016844.1:CDS
GTGGAAAATACCTAGGAGCT+TGG 0.572359 3:-102775296 None:intergenic
TCAGTTGCAGAGACAAGAGA+AGG 0.586488 3:+102776627 MsaT016844.1:CDS
AGGTTACTTTCTCAAAGAGA+AGG 0.588558 3:+102774511 MsaT016844.1:CDS
GAGTTCAGAAGGGTCGAAGT+TGG 0.589393 3:-102776227 None:intergenic
TAGTCCCAGGGATGCTGCAG+AGG 0.589902 3:+102776277 MsaT016844.1:CDS
GATTACAGACTTCCAACTAA+AGG 0.598201 3:+102775441 MsaT016844.1:CDS
GTATTAGGTTGGTTTCCTCA+GGG 0.607496 3:+102776023 MsaT016844.1:CDS
CACTTGTCAAATTAGTCCCA+GGG 0.610153 3:+102776265 MsaT016844.1:CDS
TTCCAGACAGTGAACGTGGA+AGG 0.612412 3:+102774780 MsaT016844.1:CDS
GAAAGTACCTGAGAGGAGAA+GGG 0.613708 3:-102776088 None:intergenic
ATGAAGGATGCATAATCAAG+AGG 0.614891 3:+102775129 MsaT016844.1:intron
AGAGATTACCACATTGTGCG+AGG 0.621330 3:+102775783 MsaT016844.1:CDS
CAGTTGCAGAGACAAGAGAA+GGG 0.631630 3:+102776628 MsaT016844.1:CDS
GTCTCTGTAGCACATCCGAA+AGG 0.648532 3:+102775236 MsaT016844.1:intron
AATCTTCCAGACAGTGAACG+TGG 0.648566 3:+102774776 MsaT016844.1:CDS
GGCAATAGAAAGTACCTGAG+AGG 0.663048 3:-102776095 None:intergenic
GACGTTTGCAGAGTTCAGAA+GGG 0.664429 3:-102776237 None:intergenic
AGTAAGTACCTAATTGATGG+AGG 0.665939 3:-102776370 None:intergenic
TTGATGGAGGTGCTCCCAAG+AGG 0.668389 3:-102776357 None:intergenic
TCTATTGCCAGAAAAGAGAG+TGG 0.678462 3:-102774619 None:intergenic
GATTACCACATTGTGCGAGG+CGG 0.687602 3:+102775786 MsaT016844.1:CDS
ATATTCCGCCTCGCACAATG+TGG 0.688829 3:-102775791 None:intergenic
AGTACCTGAGAGGAGAAGGG+TGG 0.700461 3:-102776085 None:intergenic
TGATCATTGGTATCTCCCTG+AGG 0.724655 3:-102776038 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 102774459 102776728 102774459 ID=MsaG016844
Chr3 mRNA 102774459 102776728 102774459 ID=MsaT016844.1;Parent=MsaG016844
Chr3 exon 102774459 102774643 102774459 ID=MsaT016844.1.exon1;Parent=MsaT016844.1
Chr3 CDS 102774459 102774643 102774459 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102774748 102774801 102774748 ID=MsaT016844.1.exon2;Parent=MsaT016844.1
Chr3 CDS 102774748 102774801 102774748 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102775135 102775150 102775135 ID=MsaT016844.1.exon3;Parent=MsaT016844.1
Chr3 CDS 102775135 102775150 102775135 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102775246 102775307 102775246 ID=MsaT016844.1.exon4;Parent=MsaT016844.1
Chr3 CDS 102775246 102775307 102775246 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102775435 102775462 102775435 ID=MsaT016844.1.exon5;Parent=MsaT016844.1
Chr3 CDS 102775435 102775462 102775435 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102775567 102775628 102775567 ID=MsaT016844.1.exon6;Parent=MsaT016844.1
Chr3 CDS 102775567 102775628 102775567 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102775762 102775861 102775762 ID=MsaT016844.1.exon7;Parent=MsaT016844.1
Chr3 CDS 102775762 102775861 102775762 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102775966 102776102 102775966 ID=MsaT016844.1.exon8;Parent=MsaT016844.1
Chr3 CDS 102775966 102776102 102775966 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102776187 102776383 102776187 ID=MsaT016844.1.exon9;Parent=MsaT016844.1
Chr3 CDS 102776187 102776383 102776187 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Chr3 exon 102776613 102776728 102776613 ID=MsaT016844.1.exon10;Parent=MsaT016844.1
Chr3 CDS 102776613 102776728 102776613 ID=cds.MsaT016844.1;Parent=MsaT016844.1
Gene Sequence

>MsaT016844.1

ATGGGGAGAGTTAAGCTTCAGATCAAAAAGATTGAGAACATAACAAATAGACAGGTTACTTTCTCAAAGAGAAGGAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGTTGATGTCGGTCTCATCATGTTTTCTCCATCTGGGAGAGCCACTCTCTTTTCTGGCAATAGAAGCATTGAAGAAATCCTAGAACGATATATAAATCTTCCAGACAGTGAACGTGGAAGGATGCATAATCAAGAGCACATCCGAAAGGTGCTTAGAAAGTTGAAAGCTGAAACTGATCAGATATGCCAAGCTCCTAGCCCTACGATTACAGACTTCCAACTAAAGGAGGTTCAAAGAGAAATATTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAATCGACTAAGGATATTTGAAGGAGATCCTTCAGAGATTACCACATTGTGCGAGGCGGAATATCGTGAACAAGTCCTACAGGAAACTCTAAAACAAGTGCAACTGCGAAAAGTACATCTTACAAAAACTGTAGATGTAGATGGATTTGTTGCTGGAACTACAGAGAATGTATTAGGTTGGTTTCCTCAGGGAGATACCAATGATCAGATTCTGAACTTTGCCAATGCTTACCACCCTTCTCCTCTCAGTGATCAACAATCACTGAGTACTGTTGTTGATATGGTAACGCCAACTTCGACCCTTCTGAACTCTGCAAACGTCGATCACACTTGTCAAATTAGTCCCAGGGATGCTGCAGAGGCTGACGTTAGTAATACGCTAAGTACTCAGTTTGGACAGGTTATGGATACCAATTTGTCCTCTTGGGAGCACCTCCATCAATTAGAGAGAGGACCATTGTCAGTTGCAGAGACAAGAGAAGGGCAACTGCTTGAGCAGTATTTTTCTCAATTTAGTCCGTCAAATATCTTCATAACCAATCATGGTCAACTTCAAACATGA
Protein sequence

>MsaT016844.1

MGRVKLQIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRATLFSGNRSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQAPSPTITDFQLKEVQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLRKVHLTKTVDVDGFVAGTTENVLGWFPQGDTNDQILNFANAYHPSPLSDQQSLSTVVDMVTPTSTLLNSANVDHTCQISPRDAAEADVSNTLSTQFGQVMDTNLSSWEHLHQLERGPLSVAETREGQLLEQYFSQFSPSNIFITNHGQLQT*