AlfalfaGEDB | MsaG016866

M. sativa ssp. caerulea / MsaG016866

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016866	PNX89510.1	40.132	152	66	3	133	259	4	155	2.73e-18	95.9
MsaG016866	PNX89510.1	41.057	246	92	6	133	329	86	327	1.72e-34	139

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016866	tr\|A0A2K3MFF0\|A0A2K3MFF0_TRIPR	40.132	152	66	3	133	259	4	155	1.31e-18	95.9
MsaG016866	tr\|A0A2K3MFF0\|A0A2K3MFF0_TRIPR	41.057	246	92	6	133	329	86	327	8.23e-35	139

TFs/TRs:

Gene ID	Type	Classification
MsaG016866	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG016866	0.833861	7.591880e-56	2.457889e-53
MsaG001730	MsaG016866	0.845976	5.455732e-59	2.581817e-56
MsaG003422	MsaG016866	0.864877	1.769762e-64	1.663821e-61
MsaG004500	MsaG016866	0.807029	1.047526e-49	1.665595e-47
MsaG004621	MsaG016866	0.833783	7.941425e-56	2.565274e-53
MsaG005100	MsaG016866	0.815594	1.478613e-51	2.901591e-49
MsaG005496	MsaG016866	0.821485	6.922257e-53	1.583482e-50
MsaG005497	MsaG016866	0.836865	1.334078e-56	4.726026e-54
MsaG005722	MsaG016866	0.824927	1.097653e-53	2.755748e-51
MsaG006555	MsaG016866	0.830724	4.499770e-55	1.329468e-52
MsaG006657	MsaG016866	0.806036	1.692736e-49	2.629165e-47
MsaG006765	MsaG016866	0.810701	1.731562e-50	3.007907e-48
MsaG007442	MsaG016866	0.825570	7.746247e-54	1.979414e-51
MsaG007630	MsaG016866	0.820059	1.467506e-52	3.232697e-50
MsaG009389	MsaG016866	0.814826	2.186133e-51	4.207524e-49
MsaG010706	MsaG016866	0.824734	1.218336e-53	3.042479e-51
MsaG010853	MsaG016866	0.814478	2.608613e-51	4.976679e-49
MsaG011244	MsaG016866	0.815564	1.501431e-51	2.944092e-49
MsaG011217	MsaG016866	0.842740	4.004012e-58	1.705034e-55
MsaG011873	MsaG016866	0.827362	2.911455e-54	7.820563e-52
MsaG014075	MsaG016866	0.815574	1.493267e-51	2.928874e-49
MsaG015445	MsaG016866	0.803040	7.088330e-49	1.026938e-46
MsaG015485	MsaG016866	0.836044	2.152918e-56	7.440555e-54
MsaG015829	MsaG016866	0.824543	1.350786e-53	3.355831e-51
MsaG015832	MsaG016866	0.829436	9.247786e-55	2.633490e-52
MsaG016215	MsaG016866	0.812263	7.956098e-51	1.436066e-48
MsaG016273	MsaG016866	0.817155	6.640969e-52	1.356308e-49
MsaG016397	MsaG016866	0.823682	2.146451e-53	5.209317e-51
MsaG016517	MsaG016866	0.849958	4.402447e-60	2.382669e-57
MsaG016818	MsaG016866	0.811757	1.024287e-50	1.825949e-48
MsaG016866	MsaG017219	0.828159	1.877203e-54	5.156378e-52
MsaG016866	MsaG017495	0.867275	3.107439e-65	3.217834e-62
MsaG016866	MsaG017700	0.816768	8.105154e-52	1.638881e-49
MsaG016866	MsaG018598	0.831810	2.440917e-55	7.443485e-53
MsaG016866	MsaG019237	0.841742	7.333596e-58	3.024626e-55
MsaG016866	MsaG019944	0.808345	5.519632e-50	9.057185e-48
MsaG016866	MsaG020215	0.840036	2.045746e-57	7.995457e-55
MsaG016866	MsaG020492	0.818704	2.978468e-52	6.331042e-50
MsaG016866	MsaG021720	0.806760	1.193524e-49	1.885798e-47
MsaG016866	MsaG023047	0.805291	2.422448e-49	3.697445e-47
MsaG016866	MsaG024295	0.829378	9.548849e-55	2.714688e-52
MsaG016866	MsaG025740	0.841617	7.913185e-58	3.250756e-55
MsaG016866	MsaG026692	0.806147	1.604817e-49	2.499121e-47
MsaG016866	MsaG027376	0.829229	1.037367e-54	2.936351e-52
MsaG016866	MsaG027919	0.800560	2.277104e-48	3.117949e-46
MsaG016866	MsaG027988	0.835477	2.992241e-56	1.016731e-53
MsaG016866	MsaG028679	0.803931	4.641942e-49	6.865231e-47
MsaG016866	MsaG029063	0.804249	3.989995e-49	5.944698e-47
MsaG016866	MsaG030039	0.823498	2.369480e-53	5.721645e-51
MsaG016866	MsaG032373	0.807649	7.751125e-50	1.250771e-47
MsaG016866	MsaG032915	0.804011	4.467841e-49	6.620177e-47
MsaG016866	MsaG032947	0.807053	1.035386e-49	1.647220e-47
MsaG016866	MsaG039178	0.802712	8.279152e-49	1.190410e-46
MsaG016866	MsaG039487	0.812153	8.403521e-51	1.512692e-48
MsaG016866	MsaG040269	0.827269	3.063689e-54	8.208160e-52
MsaG016866	MsaG044107	0.817824	4.699748e-52	9.765360e-50
MsaG016866	MsaG044436	0.800126	2.788011e-48	3.780184e-46
MsaG016866	MsaG045331	0.810875	1.588651e-50	2.771388e-48
MsaG016866	MsaG046376	0.801056	1.805494e-48	2.499917e-46
MsaG016866	MsaG046497	0.827013	3.525401e-54	9.377482e-52
MsaG016866	MsaG046660	0.818673	3.025612e-52	6.426143e-50
MsaG016866	MsaG046730	0.825584	7.688833e-54	1.965459e-51
MsaG016866	MsaG046972	0.856588	5.645129e-62	3.864053e-59
MsaG016866	MsaG047069	0.832136	2.029095e-55	6.246592e-53
MsaG016866	MsaG002316	0.836886	1.317205e-56	4.669304e-54
MsaG016866	MsaG001966	0.816256	1.054040e-51	2.103499e-49
MsaG016866	MsaG002000	0.818507	3.298386e-52	6.975372e-50
MsaG016866	MsaG001807	0.823625	2.213062e-53	5.362675e-51
MsaG016866	MsaG000634	0.817700	5.013042e-52	1.038232e-49
MsaG016866	MsaG001987	0.847163	2.595765e-59	1.278110e-56
MsaG016866	MsaG005167	0.806307	1.485265e-49	2.321850e-47
MsaG016866	MsaG001893	0.864141	2.997963e-64	2.736997e-61
MsaG016866	MsaG017934	0.802796	7.954955e-49	1.146023e-46
MsaG016866	MsaG023445	0.837146	1.131283e-56	4.042059e-54
MsaG016866	MsaG028734	0.823448	2.433204e-53	5.867558e-51
MsaG016866	MsaG030607	0.824614	1.299893e-53	3.235536e-51
MsaG016866	MsaG033319	0.840510	1.540754e-57	6.111698e-55
MsaG016866	MsaG031847	0.812618	6.659647e-51	1.212727e-48
MsaG016866	MsaG039696	0.855885	9.052158e-62	6.038458e-59
MsaG016866	MsaG039788	0.818829	2.789899e-52	5.949707e-50
MsaG016866	MsaG035600	0.811219	1.339026e-50	2.355774e-48
MsaG016866	MsaG036651	0.832286	1.863904e-55	5.762637e-53
MsaG016866	MsaG037725	0.817741	4.907247e-52	1.017410e-49
MsaG016866	MsaG038853	0.812372	7.532109e-51	1.363273e-48
MsaG016866	MsaG037508	0.800020	2.928273e-48	3.961099e-46
MsaG016866	MsaG042585	0.831204	3.436185e-55	1.029329e-52
MsaG016866	MsaG043047	0.802456	9.342050e-49	1.335457e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTATGTCTTCACAAGCTTT+AGG	0.218586	3:+103030787	MsaT016866.1:CDS
ATTTCTTGTTGATGCTTTGT+AGG	0.248605	3:-103030844	None:intergenic
GATAATTCATCATTTCTTAA+AGG	0.258078	3:-103029173	None:intergenic
ACATTCGACTTGTCTACTAT+TGG	0.276222	3:-103030982	None:intergenic
CTTTCAAGCTTCTTCCTTGA+TGG	0.289279	3:-103031034	None:intergenic
TTATGTCTTCACAAGCTTTA+GGG	0.298843	3:+103030788	MsaT016866.1:CDS
TTATCATCAAATGGGTCATT+AGG	0.302998	3:+103029191	MsaT016866.1:CDS
CTCACCGATGATTCGATTTA+CGG	0.303465	3:+103030520	MsaT016866.1:CDS
GTTCTAATGTTGCATCTAAC+TGG	0.314264	3:+103029273	MsaT016866.1:CDS
CATTCGACTTGTCTACTATT+GGG	0.338002	3:-103030981	None:intergenic
AAACAAGTTCACTATCAAAA+TGG	0.341580	3:+103029134	MsaT016866.1:CDS
AACGAAGAGATTGAAATTAG+AGG	0.372610	3:+103030373	MsaT016866.1:CDS
ATCCTTAGGAGGACACAAAA+AGG	0.374040	3:+103030627	MsaT016866.1:CDS
AATGATGAATTATCATCAAA+TGG	0.381464	3:+103029182	MsaT016866.1:CDS
CGAATTATCGGTGAGATTGA+TGG	0.404763	3:-103030686	None:intergenic
CATAGTAATCATCATGCATA+TGG	0.409756	3:+103029302	MsaT016866.1:CDS
CGACCCACGAATCGAATTAT+CGG	0.427366	3:-103030698	None:intergenic
AACAATACTACTAATATTGT+TGG	0.430734	3:+103029248	MsaT016866.1:CDS
AAATACCTTGATGTTTCTGC+TGG	0.436996	3:-103029363	None:intergenic
TCACCGATGATTCGATTTAC+GGG	0.450292	3:+103030521	MsaT016866.1:CDS
CAAGCTTCTTCCTTGATGGT+AGG	0.461171	3:-103031030	None:intergenic
GACGCAAGAAAATGTATTTG+AGG	0.462564	3:-103030749	None:intergenic
ATGATGAATTATCATCAAAT+GGG	0.500216	3:+103029183	MsaT016866.1:CDS
TCGCTTATCATCACTTGTTG+AGG	0.515757	3:-103029218	None:intergenic
CGATAATTCGATTCGTGGGT+CGG	0.519440	3:+103030699	MsaT016866.1:CDS
TACTCTTCACGATCCTTAGG+AGG	0.520807	3:+103030616	MsaT016866.1:CDS
AATACTACTAATATTGTTGG+TGG	0.531727	3:+103029251	MsaT016866.1:CDS
GTGAAGAGTAAAACTCTCTC+CGG	0.531973	3:-103030603	None:intergenic
CTCACCGATAATTCGATTCG+TGG	0.537516	3:+103030694	MsaT016866.1:CDS
TCGGTGAGATTAACGAAAAG+AGG	0.543222	3:-103030505	None:intergenic
TAATTTCATCATAAGACCCT+CGG	0.547601	3:-103030908	None:intergenic
AATTAGAGGATCAAATGCAA+GGG	0.558949	3:+103030387	MsaT016866.1:CDS
TCGGTGAGATTGATGGAAAG+AGG	0.566132	3:-103030679	None:intergenic
CGAGACCAGCAGAAACATCA+AGG	0.569455	3:+103029358	MsaT016866.1:CDS
CTTATGATGAAATTAGAAGA+TGG	0.574093	3:+103030916	MsaT016866.1:CDS
TATGTCTTCACAAGCTTTAG+GGG	0.577249	3:+103030789	MsaT016866.1:CDS
ATGAAATTAGAAGATGGTGT+TGG	0.580707	3:+103030922	MsaT016866.1:CDS
TCGAATGTGGTTGGCAGACG+TGG	0.583035	3:+103030997	MsaT016866.1:CDS
GTAGACAAGTCGAATGTGGT+TGG	0.590394	3:+103030988	MsaT016866.1:CDS
AAATTAGAGGATCAAATGCA+AGG	0.596143	3:+103030386	MsaT016866.1:CDS
TGATCATCATCCTACCATCA+AGG	0.614354	3:+103031020	MsaT016866.1:CDS
CGACCCGTAAATCGAATCAT+CGG	0.620370	3:-103030524	None:intergenic
TCACCGATAATTCGATTCGT+GGG	0.623824	3:+103030695	MsaT016866.1:CDS
ATGTCTTCACAAGCTTTAGG+GGG	0.627825	3:+103030790	MsaT016866.1:CDS
CTTGCATGTAAAAGTCTCTG+AGG	0.631561	3:-103030575	None:intergenic
ATTGATCGATTGAAGACCGA+GGG	0.641525	3:+103030892	MsaT016866.1:CDS
AATAGTAGACAAGTCGAATG+TGG	0.644495	3:+103030984	MsaT016866.1:CDS
ATTAGAGGATCAAATGCAAG+GGG	0.648497	3:+103030388	MsaT016866.1:CDS
TATTTGTGTAGAAAACACGT+TGG	0.679210	3:+103030350	MsaT016866.1:intron
TATTGATCGATTGAAGACCG+AGG	0.701890	3:+103030891	MsaT016866.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	103029083	103031053	103029083	ID=MsaG016866
Chr3	mRNA	103029083	103031053	103029083	ID=MsaT016866.1;Parent=MsaG016866
Chr3	exon	103029083	103029379	103029083	ID=MsaT016866.1.exon1;Parent=MsaT016866.1
Chr3	CDS	103029083	103029379	103029083	ID=cds.MsaT016866.1;Parent=MsaT016866.1
Chr3	exon	103030361	103031053	103030361	ID=MsaT016866.1.exon2;Parent=MsaT016866.1
Chr3	CDS	103030361	103031053	103030361	ID=cds.MsaT016866.1;Parent=MsaT016866.1

Gene Sequence

>MsaT016866.1

ATGGTTTATCTTTTTGGAGTTAACATTGACTATCATCACAATCAACAACAAAAACAAGTTCACTATCAAAATGGTACGAGAAACAATGATCCTTTAAGAAATGATGAATTATCATCAAATGGGTCATTAGGATTTCCTCAACAAGTGATGATAAGCGACAACAACAACAATACTACTAATATTGTTGGTGGTTCTAATGTTGCATCTAACTGGTTTGTGCATAGTAATCATCATGCATATGGATCTCTATATTCTTATGTTAGAAACAACTCTCTCGAGACCAGCAGAAACATCAAGAAAACACGTTGGAACGAAGAGATTGAAATTAGAGGATCAAATGCAAGGGGAGAGACTTTTACATGTGCTTCTATTTCTGCTTGCAGCAACAACAACAACAAGCGAGTAAAAGTTGAACAATGTCAAATTTTAAACATCAAGACGCCTCTTTTCGTTAATCTCACCGATGATTCGATTTACGGGTCGAATATGCAAGAACGTGATTTTTTTGCGACCTCAGAGACTTTTACATGCAAGATTTGCCGGAGAGAGTTTTACTCTTCACGATCCTTAGGAGGACACAAAAAGGTTCATAAAGGTGAGAGCACACTCACAGAGCCTCTTTCCATCAATCTCACCGATAATTCGATTCGTGGGTCGGTGATGCAAGAAGATGATTTATACGCTACCTCAAATACATTTTCTTGCGTCATTTGTAAGAGAAAGTTTATGTCTTCACAAGCTTTAGGGGGACACAAAAAGGTTCATAAGGGTAAGCGTACACCTACAAAGCATCAACAAGAAATACAAGAGACGATAAATTTTTTGTCTATTGATCGATTGAAGACCGAGGGTCTTATGATGAAATTAGAAGATGGTGTTGGAGAGTCTTCTTCTATAAACGTTGATATGAAGTCAAACCCAATAGTAGACAAGTCGAATGTGGTTGGCAGACGTGGTGATCATCATCCTACCATCAAGGAAGAAGCTTGA

Protein sequence

>MsaT016866.1

MVYLFGVNIDYHHNQQQKQVHYQNGTRNNDPLRNDELSSNGSLGFPQQVMISDNNNNTTNIVGGSNVASNWFVHSNHHAYGSLYSYVRNNSLETSRNIKKTRWNEEIEIRGSNARGETFTCASISACSNNNNKRVKVEQCQILNIKTPLFVNLTDDSIYGSNMQERDFFATSETFTCKICRREFYSSRSLGGHKKVHKGESTLTEPLSINLTDNSIRGSVMQEDDLYATSNTFSCVICKRKFMSSQALGGHKKVHKGKRTPTKHQQEIQETINFLSIDRLKTEGLMMKLEDGVGESSSINVDMKSNPIVDKSNVVGRRGDHHPTIKEEA*