Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016888 | XP_003603049.1 | 95.157 | 413 | 15 | 2 | 6 | 416 | 13 | 422 | 0.0 | 781 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016888 | sp|Q9M7Q4|AI5L5_ARATH | 53.613 | 429 | 115 | 16 | 20 | 411 | 21 | 402 | 7.92e-116 | 347 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016888 | tr|G7J6E3|G7J6E3_MEDTR | 95.157 | 413 | 15 | 2 | 6 | 416 | 13 | 422 | 0.0 | 781 |
Gene ID | Type | Classification |
---|---|---|
MsaG016888 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016888 | MtrunA17_Chr3g0133971 | 95.157 | 413 | 15 | 2 | 6 | 416 | 13 | 422 | 0.0 | 781 |
MsaG016888 | MtrunA17_Chr4g0044771 | 46.117 | 412 | 137 | 15 | 16 | 406 | 14 | 361 | 1.44e-90 | 278 |
MsaG016888 | MtrunA17_Chr8g0355121 | 50.407 | 123 | 54 | 2 | 20 | 137 | 24 | 144 | 3.40e-29 | 115 |
MsaG016888 | MtrunA17_Chr8g0355121 | 62.319 | 69 | 23 | 1 | 329 | 394 | 220 | 288 | 1.51e-17 | 82.8 |
MsaG016888 | MtrunA17_Chr6g0460301 | 45.517 | 145 | 65 | 3 | 7 | 137 | 2 | 146 | 3.25e-28 | 113 |
MsaG016888 | MtrunA17_Chr7g0266211 | 47.015 | 134 | 49 | 4 | 26 | 137 | 45 | 178 | 7.12e-27 | 111 |
MsaG016888 | MtrunA17_Chr7g0266211 | 45.522 | 134 | 65 | 3 | 273 | 404 | 274 | 401 | 2.02e-12 | 68.6 |
MsaG016888 | MtrunA17_Chr3g0080341 | 49.180 | 122 | 55 | 2 | 19 | 135 | 19 | 138 | 3.00e-26 | 107 |
MsaG016888 | MtrunA17_Chr3g0080341 | 41.284 | 109 | 61 | 1 | 289 | 394 | 189 | 297 | 1.09e-17 | 83.6 |
MsaG016888 | MtrunA17_Chr7g0254991 | 41.791 | 134 | 62 | 3 | 20 | 143 | 16 | 143 | 4.95e-23 | 99.0 |
MsaG016888 | MtrunA17_Chr7g0254991 | 67.213 | 61 | 19 | 1 | 335 | 394 | 235 | 295 | 4.25e-17 | 81.6 |
MsaG016888 | MtrunA17_Chr2g0321381 | 40.458 | 131 | 63 | 5 | 21 | 139 | 23 | 150 | 2.73e-19 | 87.8 |
MsaG016888 | MtrunA17_Chr5g0440841 | 46.341 | 123 | 56 | 3 | 20 | 135 | 22 | 141 | 1.27e-18 | 85.5 |
MsaG016888 | MtrunA17_Chr5g0440841 | 58.333 | 60 | 25 | 0 | 335 | 394 | 185 | 244 | 2.91e-12 | 66.6 |
MsaG016888 | MtrunA17_Chr2g0321411 | 36.943 | 157 | 79 | 8 | 13 | 155 | 1 | 151 | 2.88e-16 | 79.0 |
MsaG016888 | MtrunA17_Chr2g0321411 | 54.930 | 71 | 32 | 0 | 335 | 405 | 197 | 267 | 1.01e-14 | 74.3 |
MsaG016888 | MtrunA17_Chr4g0051101 | 37.500 | 136 | 73 | 4 | 272 | 405 | 62 | 187 | 1.12e-12 | 66.6 |
MsaG016888 | MtrunA17_Chr1g0201751 | 62.264 | 53 | 20 | 0 | 343 | 395 | 157 | 209 | 2.61e-12 | 66.6 |
MsaG016888 | MtrunA17_Chr5g0405951 | 53.846 | 65 | 18 | 1 | 348 | 400 | 166 | 230 | 3.57e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016888 | AT1G45249.1 | 53.613 | 429 | 115 | 16 | 20 | 411 | 21 | 402 | 8.05e-117 | 347 |
MsaG016888 | AT1G45249.7 | 53.613 | 429 | 115 | 16 | 20 | 411 | 36 | 417 | 1.31e-116 | 347 |
MsaG016888 | AT1G45249.6 | 53.613 | 429 | 115 | 16 | 20 | 411 | 36 | 417 | 1.31e-116 | 347 |
MsaG016888 | AT1G45249.3 | 52.273 | 440 | 115 | 17 | 20 | 411 | 21 | 413 | 2.59e-113 | 338 |
MsaG016888 | AT1G45249.10 | 51.282 | 390 | 108 | 15 | 20 | 374 | 21 | 363 | 2.92e-96 | 293 |
MsaG016888 | AT1G45249.5 | 51.282 | 390 | 108 | 15 | 20 | 374 | 21 | 363 | 2.92e-96 | 293 |
MsaG016888 | AT1G45249.4 | 49.876 | 403 | 114 | 16 | 20 | 381 | 21 | 376 | 1.15e-94 | 290 |
MsaG016888 | AT1G45249.8 | 49.876 | 403 | 114 | 16 | 20 | 381 | 21 | 376 | 1.15e-94 | 290 |
MsaG016888 | AT1G45249.2 | 49.876 | 403 | 114 | 16 | 20 | 381 | 21 | 376 | 1.15e-94 | 290 |
MsaG016888 | AT1G45249.9 | 49.876 | 403 | 114 | 16 | 20 | 381 | 21 | 376 | 1.15e-94 | 290 |
MsaG016888 | AT3G19290.4 | 46.135 | 414 | 161 | 12 | 18 | 405 | 32 | 409 | 1.09e-84 | 265 |
MsaG016888 | AT4G34000.1 | 44.201 | 457 | 163 | 15 | 17 | 416 | 24 | 445 | 1.66e-84 | 266 |
MsaG016888 | AT4G34000.4 | 44.201 | 457 | 163 | 15 | 17 | 416 | 24 | 445 | 1.66e-84 | 266 |
MsaG016888 | AT4G34000.2 | 44.201 | 457 | 163 | 15 | 17 | 416 | 24 | 445 | 1.66e-84 | 266 |
MsaG016888 | AT3G19290.1 | 46.489 | 413 | 159 | 12 | 18 | 404 | 32 | 408 | 2.18e-84 | 265 |
MsaG016888 | AT3G19290.5 | 46.489 | 413 | 159 | 12 | 18 | 404 | 32 | 408 | 2.18e-84 | 265 |
MsaG016888 | AT3G19290.3 | 45.561 | 428 | 168 | 13 | 18 | 416 | 32 | 423 | 4.28e-84 | 264 |
MsaG016888 | AT1G49720.2 | 44.578 | 415 | 159 | 14 | 8 | 405 | 9 | 369 | 4.35e-80 | 253 |
MsaG016888 | AT1G49720.1 | 44.928 | 414 | 157 | 14 | 8 | 404 | 9 | 368 | 7.25e-80 | 252 |
MsaG016888 | AT1G49720.3 | 44.928 | 414 | 157 | 14 | 8 | 404 | 9 | 368 | 7.25e-80 | 252 |
MsaG016888 | AT4G34000.3 | 44.186 | 430 | 152 | 14 | 17 | 393 | 24 | 418 | 1.48e-78 | 250 |
MsaG016888 | AT3G19290.2 | 41.889 | 413 | 176 | 13 | 18 | 404 | 32 | 406 | 4.56e-66 | 217 |
MsaG016888 | AT5G42910.1 | 35.323 | 402 | 169 | 13 | 20 | 404 | 20 | 347 | 2.38e-45 | 161 |
MsaG016888 | AT3G56850.1 | 56.557 | 122 | 48 | 2 | 20 | 137 | 16 | 136 | 1.06e-32 | 125 |
MsaG016888 | AT3G56850.1 | 68.852 | 61 | 18 | 1 | 335 | 394 | 212 | 272 | 8.35e-18 | 84.0 |
MsaG016888 | AT2G41070.5 | 47.436 | 156 | 63 | 4 | 20 | 174 | 16 | 153 | 3.22e-32 | 122 |
MsaG016888 | AT2G41070.5 | 63.636 | 66 | 24 | 0 | 335 | 400 | 178 | 243 | 8.57e-18 | 82.8 |
MsaG016888 | AT2G41070.3 | 47.436 | 156 | 63 | 4 | 20 | 174 | 16 | 153 | 7.41e-32 | 122 |
MsaG016888 | AT2G41070.3 | 66.667 | 60 | 20 | 0 | 335 | 394 | 178 | 237 | 2.71e-17 | 81.6 |
MsaG016888 | AT2G41070.1 | 47.436 | 156 | 63 | 4 | 20 | 174 | 16 | 153 | 7.41e-32 | 122 |
MsaG016888 | AT2G41070.1 | 66.667 | 60 | 20 | 0 | 335 | 394 | 178 | 237 | 2.71e-17 | 81.6 |
MsaG016888 | AT2G41070.2 | 47.436 | 156 | 63 | 4 | 20 | 174 | 16 | 153 | 7.41e-32 | 122 |
MsaG016888 | AT2G41070.2 | 66.667 | 60 | 20 | 0 | 335 | 394 | 178 | 237 | 2.71e-17 | 81.6 |
MsaG016888 | AT2G41070.4 | 47.436 | 156 | 63 | 4 | 20 | 174 | 25 | 162 | 8.94e-32 | 122 |
MsaG016888 | AT2G41070.4 | 66.667 | 60 | 20 | 0 | 335 | 394 | 187 | 246 | 2.85e-17 | 82.0 |
MsaG016888 | AT2G36270.1 | 53.097 | 113 | 49 | 2 | 298 | 408 | 306 | 416 | 7.75e-24 | 103 |
MsaG016888 | AT2G36270.1 | 38.144 | 194 | 42 | 6 | 17 | 137 | 31 | 219 | 2.28e-22 | 99.0 |
MsaG016888 | AT2G36270.2 | 53.097 | 113 | 49 | 2 | 298 | 408 | 306 | 416 | 7.75e-24 | 103 |
MsaG016888 | AT2G36270.2 | 38.144 | 194 | 42 | 6 | 17 | 137 | 31 | 219 | 2.28e-22 | 99.0 |
MsaG016888 | AT2G36270.3 | 55.046 | 109 | 45 | 2 | 298 | 404 | 306 | 412 | 7.88e-24 | 103 |
MsaG016888 | AT2G36270.3 | 38.144 | 194 | 42 | 6 | 17 | 137 | 31 | 219 | 4.27e-22 | 98.2 |
MsaG016888 | AT3G44460.1 | 42.169 | 166 | 71 | 7 | 19 | 168 | 34 | 190 | 4.31e-23 | 99.8 |
MsaG016888 | AT5G44080.1 | 61.429 | 70 | 24 | 1 | 329 | 395 | 210 | 279 | 1.53e-15 | 77.4 |
MsaG016888 | AT4G35900.1 | 50.000 | 94 | 38 | 2 | 319 | 406 | 189 | 279 | 1.98e-14 | 73.9 |
MsaG016888 | AT1G03970.1 | 63.492 | 63 | 23 | 0 | 333 | 395 | 173 | 235 | 3.25e-14 | 72.8 |
MsaG016888 | AT2G17770.2 | 49.367 | 79 | 38 | 1 | 332 | 408 | 109 | 187 | 1.16e-13 | 69.7 |
Find 109 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGGTTCTGGAAAAGATTT+TGG | 0.152121 | 3:-103338071 | MsaT016888.1:CDS |
CCAGATATCTAGTGATAAAA+TGG | 0.157392 | 3:-103337268 | MsaT016888.1:CDS |
GAATAAAGTTGCTGGCTTTA+TGG | 0.173743 | 3:-103337685 | MsaT016888.1:CDS |
TGTTGGAAATAATGGTAATT+TGG | 0.177665 | 3:-103337733 | MsaT016888.1:CDS |
AATTTGCCTTTGAATGTTAA+TGG | 0.203648 | 3:-103337603 | MsaT016888.1:CDS |
GGATTATGGTGGTCCTAATT+TGG | 0.219976 | 3:-103337880 | MsaT016888.1:CDS |
ATGAATTGTTGAAGAATATT+TGG | 0.232178 | 3:-103338034 | MsaT016888.1:CDS |
GTTGGAAATAATGGTAATTT+GGG | 0.258825 | 3:-103337732 | MsaT016888.1:CDS |
AATAAAGTTGCTGGCTTTAT+GGG | 0.266563 | 3:-103337684 | MsaT016888.1:CDS |
AAGGATATTTCTAAGGATTA+TGG | 0.280302 | 3:-103337894 | MsaT016888.1:CDS |
GCACCAGGGGCTGTTCAAAT+TGG | 0.296366 | 3:-103337309 | MsaT016888.1:CDS |
GGGAATGGTAGTAGAATTAA+TGG | 0.305683 | 3:-103337663 | MsaT016888.1:CDS |
GTCATTGGTGCAGCCAAATT+AGG | 0.329699 | 3:+103337867 | None:intergenic |
CTTGGTAATGTTGGAAATAA+TGG | 0.336097 | 3:-103337741 | MsaT016888.1:CDS |
ATGAACAGTATGGGAGGTTC+TGG | 0.340323 | 3:-103338083 | MsaT016888.1:CDS |
ATTTGCCTTTGAATGTTAAT+GGG | 0.351757 | 3:-103337602 | MsaT016888.1:CDS |
TGATGAATTTATGAACAGTA+TGG | 0.356110 | 3:-103338093 | MsaT016888.1:CDS |
GGTTTGGAAGGATATTTCTA+AGG | 0.362538 | 3:-103337901 | MsaT016888.1:CDS |
GGTATGGTTGGTTTGGCACC+AGG | 0.363433 | 3:-103337324 | MsaT016888.1:CDS |
AGAAAACAGTTGATGAGGTT+TGG | 0.367163 | 3:-103337917 | MsaT016888.1:CDS |
AAATAATGGTAATTTGGGTT+TGG | 0.367355 | 3:-103337727 | MsaT016888.1:CDS |
AATTTACCTGCTTGCGAGCC+CGG | 0.373655 | 3:+103337094 | None:intergenic |
TATCCTCCCACCTCCGTTGC+CGG | 0.377531 | 3:+103338169 | None:intergenic |
GAGAAGAATGATCAAGAATA+GGG | 0.378154 | 3:-103337133 | MsaT016888.1:CDS |
AGGGATTGGTATGGTTGGTT+TGG | 0.387370 | 3:-103337331 | MsaT016888.1:CDS |
ACAGGCTTATACCATGGAAT+TGG | 0.387535 | 3:-103336277 | MsaT016888.1:intron |
ACTCAGAGACAACCAACTTT+GGG | 0.389084 | 3:-103337846 | MsaT016888.1:CDS |
GAGCCTGCCGGCAACGGAGG+TGG | 0.395714 | 3:-103338176 | MsaT016888.1:CDS |
GACTCAGAGACAACCAACTT+TGG | 0.399256 | 3:-103337847 | MsaT016888.1:CDS |
TAGTTCAAACCAGGTTGCTT+TGG | 0.406205 | 3:+103337453 | None:intergenic |
AGAGAAGAATGATCAAGAAT+AGG | 0.407993 | 3:-103337134 | MsaT016888.1:CDS |
GGAATGAGAGGTGGAATTGT+AGG | 0.418501 | 3:-103337399 | MsaT016888.1:CDS |
CTCCCACCTCCGTTGCCGGC+AGG | 0.427109 | 3:+103338173 | None:intergenic |
ACATTCAAAGGCAAATTAGT+AGG | 0.428171 | 3:+103337609 | None:intergenic |
TACTGATTCTTTAAGGGCAC+TGG | 0.434920 | 3:+103335437 | None:intergenic |
GTAGGGCTTTCTCCTGATCA+AGG | 0.442348 | 3:-103337381 | MsaT016888.1:CDS |
TTACCATTCAATCCTTGATC+AGG | 0.443983 | 3:+103337369 | None:intergenic |
CAGCAGATGAATAAAGTTGC+TGG | 0.448703 | 3:-103337693 | MsaT016888.1:CDS |
TCTCCTGATCAAGGATTGAA+TGG | 0.449484 | 3:-103337372 | MsaT016888.1:CDS |
GATGCAGAATTCACAGTCTC+AGG | 0.456432 | 3:-103337553 | MsaT016888.1:CDS |
CTTGTGCAAGGTGGAGGGAT+TGG | 0.459403 | 3:-103337345 | MsaT016888.1:CDS |
TCACTAGATATCTGGTTAGC+AGG | 0.467233 | 3:+103337276 | None:intergenic |
TTTCTTGATCTTGGTAATGT+TGG | 0.467333 | 3:-103337750 | MsaT016888.1:CDS |
GGTGGAGGGATTGGTATGGT+TGG | 0.467962 | 3:-103337336 | MsaT016888.1:CDS |
GTTGGTTGTCTCTGAGTCAT+TGG | 0.468259 | 3:+103337852 | None:intergenic |
CAGATATCTAGTGATAAAAT+GGG | 0.478085 | 3:-103337267 | MsaT016888.1:CDS |
AATACTGCAGGAAGAAATCA+TGG | 0.484256 | 3:-103336090 | MsaT016888.1:intron |
GGTAATCTTGTGCAAGGTGG+AGG | 0.487894 | 3:-103337351 | MsaT016888.1:CDS |
TTCATTACAGGCTTATACCA+TGG | 0.487947 | 3:-103336283 | MsaT016888.1:intron |
TAGATCCCGGGCTCGCAAGC+AGG | 0.489774 | 3:-103337100 | MsaT016888.1:intron |
ATTTACCTGCTTGCGAGCCC+GGG | 0.490069 | 3:+103337095 | None:intergenic |
AGCCTGCCGGCAACGGAGGT+GGG | 0.490736 | 3:-103338175 | MsaT016888.1:CDS |
GGGAGTCAGCTGCTAGATCC+CGG | 0.491880 | 3:-103337113 | MsaT016888.1:CDS |
ATCAAGGAGCCTGCCGGCAA+CGG | 0.493396 | 3:-103338182 | MsaT016888.1:CDS |
AACTTCTGCTTCCAATTCCA+TGG | 0.494273 | 3:+103336266 | None:intergenic |
ATGCCTTTGTCTAATAATCA+AGG | 0.498880 | 3:-103337420 | MsaT016888.1:CDS |
AACAGTTGATGAGGTTTGGA+AGG | 0.501243 | 3:-103337913 | MsaT016888.1:CDS |
GTATGGTTGGTTTGGCACCA+GGG | 0.502139 | 3:-103337323 | MsaT016888.1:CDS |
CTAATCCCATTAACATTCAA+AGG | 0.509259 | 3:+103337597 | None:intergenic |
GCAAGGTGGAGGGATTGGTA+TGG | 0.513932 | 3:-103337340 | MsaT016888.1:CDS |
CAAATATTTCCAAAGCAACC+TGG | 0.521079 | 3:-103337462 | MsaT016888.1:CDS |
TATGGTTGGTTTGGCACCAG+GGG | 0.522183 | 3:-103337322 | MsaT016888.1:CDS |
GCTGAAGAGGTTCAAACAAT+GGG | 0.523150 | 3:-103338008 | MsaT016888.1:CDS |
GGTAATGATGATCCACTTGT+TGG | 0.523912 | 3:-103337642 | MsaT016888.1:CDS |
GATGAATTTATGAACAGTAT+GGG | 0.524106 | 3:-103338092 | MsaT016888.1:CDS |
TTAATGGTGGTATGCGAGGG+AGG | 0.536824 | 3:-103337197 | MsaT016888.1:CDS |
CGGAGGTGGGAGGATAGCGG+CGG | 0.537694 | 3:-103338162 | MsaT016888.1:CDS |
GTTGCTGGCTTTATGGGGAA+TGG | 0.543011 | 3:-103337678 | MsaT016888.1:CDS |
AGGTAATGGAGCTGTGGAGA+AGG | 0.545271 | 3:-103337172 | MsaT016888.1:CDS |
TGATACTTCTTCTGTGTCGC+CGG | 0.548990 | 3:-103337232 | MsaT016888.1:CDS |
GGTGGTATGCGAGGGAGGAA+AGG | 0.549516 | 3:-103337192 | MsaT016888.1:CDS |
ATTCCTTGATTATTAGACAA+AGG | 0.554034 | 3:+103337417 | None:intergenic |
GAGGAAAGGTAATGGAGCTG+TGG | 0.555405 | 3:-103337178 | MsaT016888.1:CDS |
GAAGATGCTAAGCCAAATGA+TGG | 0.557262 | 3:-103337777 | MsaT016888.1:CDS |
TGCTGAAGAGGTTCAAACAA+TGG | 0.558140 | 3:-103338009 | MsaT016888.1:CDS |
ATGCGAGGGAGGAAAGGTAA+TGG | 0.558382 | 3:-103337186 | MsaT016888.1:CDS |
AAGGAGCCTGCCGGCAACGG+AGG | 0.558465 | 3:-103338179 | MsaT016888.1:CDS |
GAATGAGAGGTGGAATTGTA+GGG | 0.560499 | 3:-103337398 | MsaT016888.1:CDS |
TAGTCAGAAAACAGTTGATG+AGG | 0.564073 | 3:-103337922 | MsaT016888.1:CDS |
TTAGTAAGAAATATGTTCAA+AGG | 0.565792 | 3:-103335469 | MsaT016888.1:CDS |
GGAGGTGGGAGGATAGCGGC+GGG | 0.565977 | 3:-103338161 | MsaT016888.1:CDS |
GAATATTTGGAGTGCTGAAG+AGG | 0.566232 | 3:-103338021 | MsaT016888.1:CDS |
GATAAAATGGGAAAGAGTAA+CGG | 0.571198 | 3:-103337255 | MsaT016888.1:CDS |
GCACCAATTTGAACAGCCCC+TGG | 0.572133 | 3:+103337306 | None:intergenic |
CTGTGGAGAAGGTAATTGAG+AGG | 0.572191 | 3:-103337161 | MsaT016888.1:CDS |
TCTAATAATCAAGGAATGAG+AGG | 0.577040 | 3:-103337411 | MsaT016888.1:CDS |
TCCGCTGACGAGGCAACCGT+CGG | 0.578535 | 3:-103338132 | MsaT016888.1:CDS |
CTCAGAGACAACCAACTTTG+GGG | 0.586904 | 3:-103337845 | MsaT016888.1:CDS |
GGAGTCAGCTGCTAGATCCC+GGG | 0.588687 | 3:-103337112 | MsaT016888.1:CDS |
CAACGGAGGTGGGAGGATAG+CGG | 0.595196 | 3:-103338165 | MsaT016888.1:CDS |
ATAAAGTTGCTGGCTTTATG+GGG | 0.596851 | 3:-103337683 | MsaT016888.1:CDS |
AGTAATCATTTGCAAAGACA+AGG | 0.608196 | 3:-103337969 | MsaT016888.1:CDS |
GTAATCTTGTGCAAGGTGGA+GGG | 0.620240 | 3:-103337350 | MsaT016888.1:CDS |
CTGCCGGCAACGGAGGTGGG+AGG | 0.621439 | 3:-103338172 | MsaT016888.1:CDS |
AATAATCAAGGAATGAGAGG+TGG | 0.622320 | 3:-103337408 | MsaT016888.1:CDS |
ACCGTCGGTGTATTCGCTGA+CGG | 0.623631 | 3:-103338117 | MsaT016888.1:CDS |
GATATTTCTAAGGATTATGG+TGG | 0.625463 | 3:-103337891 | MsaT016888.1:CDS |
TGAGTTGCATAGTTCAAACC+AGG | 0.629400 | 3:+103337444 | None:intergenic |
GGACTTTGAAGACCAACAAG+TGG | 0.630814 | 3:+103337630 | None:intergenic |
GGAATGATCAAGGAGCCTGC+CGG | 0.632048 | 3:-103338188 | MsaT016888.1:CDS |
GAGGTGGGAGGATAGCGGCG+GGG | 0.636472 | 3:-103338160 | MsaT016888.1:CDS |
ACCGACGGTTGCCTCGTCAG+CGG | 0.647274 | 3:+103338131 | None:intergenic |
TGGAGAAGGTAATTGAGAGG+AGG | 0.650346 | 3:-103337158 | MsaT016888.1:CDS |
GAATTTATGAACAGTATGGG+AGG | 0.655045 | 3:-103338089 | MsaT016888.1:CDS |
TTGAATGGTAATCTTGTGCA+AGG | 0.684719 | 3:-103337357 | MsaT016888.1:CDS |
TCAGAGACAACCAACTTTGG+GGG | 0.686998 | 3:-103337844 | MsaT016888.1:CDS |
AATGGTAATCTTGTGCAAGG+TGG | 0.698472 | 3:-103337354 | MsaT016888.1:CDS |
GAAGAGGTTCAAACAATGGG+TGG | 0.702046 | 3:-103338005 | MsaT016888.1:CDS |
ACCGTCAGCGAATACACCGA+CGG | 0.702106 | 3:+103338116 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 103335447 | 103338207 | 103335447 | ID=MsaG016888 |
Chr3 | mRNA | 103335447 | 103338207 | 103335447 | ID=MsaT016888.1;Parent=MsaG016888 |
Chr3 | exon | 103335447 | 103335491 | 103335447 | ID=MsaT016888.1.exon4;Parent=MsaT016888.1 |
Chr3 | CDS | 103335447 | 103335491 | 103335447 | ID=cds.MsaT016888.1;Parent=MsaT016888.1 |
Chr3 | exon | 103336073 | 103336102 | 103336073 | ID=MsaT016888.1.exon3;Parent=MsaT016888.1 |
Chr3 | CDS | 103336073 | 103336102 | 103336073 | ID=cds.MsaT016888.1;Parent=MsaT016888.1 |
Chr3 | exon | 103336224 | 103336295 | 103336224 | ID=MsaT016888.1.exon2;Parent=MsaT016888.1 |
Chr3 | CDS | 103336224 | 103336295 | 103336224 | ID=cds.MsaT016888.1;Parent=MsaT016888.1 |
Chr3 | exon | 103337101 | 103338207 | 103337101 | ID=MsaT016888.1.exon1;Parent=MsaT016888.1 |
Chr3 | CDS | 103337101 | 103338207 | 103337101 | ID=cds.MsaT016888.1;Parent=MsaT016888.1 |
Gene Sequence |
Protein sequence |