Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016930 | XP_039687709.1 | 95.328 | 1370 | 55 | 3 | 1 | 1361 | 1 | 1370 | 0.0 | 2719 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016930 | sp|Q9C5X9|HAC1_ARATH | 47.131 | 819 | 397 | 11 | 558 | 1355 | 863 | 1666 | 0.0 | 776 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016930 | tr|G7J5R6|G7J5R6_MEDTR | 94.695 | 1376 | 58 | 4 | 1 | 1361 | 1 | 1376 | 0.0 | 2705 |
Gene ID | Type | Classification |
---|---|---|
MsaG016930 | TR | TAZ |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016930 | MtrunA17_Chr3g0133461 | 95.282 | 1314 | 42 | 4 | 63 | 1361 | 16 | 1324 | 0.0 | 2597 |
MsaG016930 | MtrunA17_Chr3g0138411 | 70.029 | 1051 | 237 | 14 | 318 | 1361 | 208 | 1187 | 0.0 | 1436 |
MsaG016930 | MtrunA17_Chr3g0138411 | 41.684 | 475 | 187 | 12 | 1 | 433 | 1 | 427 | 5.54e-78 | 282 |
MsaG016930 | MtrunA17_Chr5g0438991 | 70.358 | 921 | 191 | 11 | 447 | 1361 | 111 | 955 | 0.0 | 1261 |
MsaG016930 | MtrunA17_Chr6g0456861 | 68.811 | 824 | 188 | 10 | 542 | 1361 | 2 | 760 | 0.0 | 1131 |
MsaG016930 | MtrunA17_Chr4g0000031 | 48.153 | 785 | 372 | 10 | 592 | 1355 | 908 | 1678 | 0.0 | 757 |
MsaG016930 | MtrunA17_Chr6g0456851 | 62.104 | 599 | 183 | 11 | 525 | 1086 | 242 | 833 | 0.0 | 719 |
MsaG016930 | MtrunA17_Chr6g0456851 | 39.910 | 223 | 80 | 8 | 24 | 233 | 12 | 193 | 1.52e-29 | 127 |
MsaG016930 | MtrunA17_Chr6g0456851 | 64.000 | 75 | 27 | 0 | 1128 | 1202 | 807 | 881 | 7.12e-22 | 102 |
MsaG016930 | MtrunA17_Chr6g0456931 | 74.286 | 245 | 63 | 0 | 795 | 1039 | 1 | 245 | 7.38e-129 | 397 |
MsaG016930 | MtrunA17_Chr5g0401991 | 60.993 | 282 | 43 | 6 | 1024 | 1299 | 1 | 221 | 1.66e-96 | 308 |
MsaG016930 | MtrunA17_Chr5g0402001 | 89.109 | 101 | 11 | 0 | 873 | 973 | 1 | 101 | 2.49e-57 | 192 |
MsaG016930 | MtrunA17_Chr1g0169961 | 53.191 | 188 | 55 | 4 | 500 | 682 | 9 | 168 | 2.19e-48 | 170 |
MsaG016930 | MtrunA17_Chr5g0439001 | 69.697 | 99 | 25 | 2 | 975 | 1073 | 1 | 94 | 1.47e-36 | 134 |
MsaG016930 | MtrunA17_Chr6g0456911 | 87.273 | 55 | 7 | 0 | 1140 | 1194 | 6 | 60 | 1.07e-25 | 101 |
MsaG016930 | MtrunA17_Chr0c02g0489811 | 85.965 | 57 | 8 | 0 | 1138 | 1194 | 5 | 61 | 2.27e-25 | 100 |
MsaG016930 | MtrunA17_Chr7g0229221 | 82.456 | 57 | 10 | 0 | 1138 | 1194 | 5 | 61 | 4.45e-24 | 97.1 |
MsaG016930 | MtrunA17_Chr0c02g0489731 | 78.947 | 57 | 12 | 0 | 1138 | 1194 | 5 | 61 | 1.32e-22 | 92.8 |
MsaG016930 | MtrunA17_Chr0c02g0489721 | 76.087 | 46 | 11 | 0 | 1068 | 1113 | 1 | 46 | 6.02e-20 | 84.3 |
MsaG016930 | MtrunA17_Chr7g0229231 | 76.087 | 46 | 11 | 0 | 1068 | 1113 | 1 | 46 | 6.02e-20 | 84.3 |
MsaG016930 | MtrunA17_Chr6g0456921 | 40.385 | 156 | 34 | 5 | 873 | 1027 | 1 | 98 | 4.04e-19 | 90.5 |
MsaG016930 | MtrunA17_Chr0c02g0489821 | 75.556 | 45 | 11 | 0 | 1070 | 1114 | 1 | 45 | 1.84e-18 | 80.1 |
MsaG016930 | MtrunA17_Chr6g0456941 | 48.515 | 101 | 31 | 2 | 525 | 622 | 149 | 231 | 1.72e-16 | 80.5 |
MsaG016930 | MtrunA17_Chr6g0456781 | 57.143 | 70 | 23 | 3 | 655 | 724 | 25 | 87 | 1.51e-15 | 75.1 |
MsaG016930 | MtrunA17_Chr5g0402011 | 87.097 | 31 | 4 | 0 | 719 | 749 | 21 | 51 | 3.66e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016930 | AT1G79000.1 | 47.131 | 819 | 397 | 11 | 558 | 1355 | 863 | 1666 | 0.0 | 776 |
MsaG016930 | AT1G79000.3 | 47.131 | 819 | 397 | 11 | 558 | 1355 | 839 | 1642 | 0.0 | 775 |
MsaG016930 | AT1G79000.2 | 47.131 | 819 | 397 | 11 | 558 | 1355 | 863 | 1666 | 0.0 | 775 |
MsaG016930 | AT1G16710.1 | 47.679 | 797 | 383 | 10 | 580 | 1355 | 892 | 1675 | 0.0 | 769 |
MsaG016930 | AT1G16710.2 | 47.679 | 797 | 383 | 10 | 580 | 1355 | 863 | 1646 | 0.0 | 768 |
MsaG016930 | AT1G16710.3 | 47.679 | 797 | 383 | 10 | 580 | 1355 | 866 | 1649 | 0.0 | 768 |
MsaG016930 | AT1G16710.10 | 47.679 | 797 | 383 | 10 | 580 | 1355 | 866 | 1649 | 0.0 | 768 |
MsaG016930 | AT1G16710.8 | 47.679 | 797 | 383 | 10 | 580 | 1355 | 866 | 1649 | 0.0 | 768 |
MsaG016930 | AT1G16710.7 | 47.679 | 797 | 383 | 10 | 580 | 1355 | 866 | 1649 | 0.0 | 768 |
MsaG016930 | AT1G16710.6 | 47.311 | 818 | 392 | 12 | 564 | 1355 | 806 | 1610 | 0.0 | 768 |
MsaG016930 | AT1G16710.4 | 47.311 | 818 | 392 | 12 | 564 | 1355 | 806 | 1610 | 0.0 | 768 |
MsaG016930 | AT1G16710.5 | 47.311 | 818 | 392 | 12 | 564 | 1355 | 806 | 1610 | 0.0 | 768 |
MsaG016930 | AT3G12980.1 | 45.299 | 819 | 405 | 15 | 564 | 1361 | 848 | 1644 | 0.0 | 726 |
MsaG016930 | AT3G12980.2 | 45.299 | 819 | 405 | 15 | 564 | 1361 | 767 | 1563 | 0.0 | 725 |
MsaG016930 | AT1G55970.1 | 41.049 | 877 | 463 | 16 | 521 | 1361 | 588 | 1446 | 0.0 | 650 |
MsaG016930 | AT1G55970.2 | 41.277 | 877 | 447 | 17 | 521 | 1361 | 588 | 1432 | 0.0 | 647 |
MsaG016930 | AT1G67220.1 | 41.762 | 783 | 401 | 18 | 601 | 1353 | 604 | 1361 | 0.0 | 605 |
MsaG016930 | AT1G16710.9 | 49.820 | 556 | 265 | 6 | 580 | 1124 | 866 | 1418 | 8.59e-177 | 565 |
Find 278 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACTCTTTGTCCTTCTTTC+AGG | 0.058574 | 3:+103779855 | None:intergenic |
CCCTGGTAGGCCATATATTT+TGG | 0.151804 | 3:+103778860 | None:intergenic |
CCCCTCTCTTCTCTCCATTA+TGG | 0.165804 | 3:-103782435 | MsaT016930.1:CDS |
CCCTCTCTTCTCTCCATTAT+GGG | 0.166459 | 3:-103782434 | MsaT016930.1:CDS |
TTACTGAAGGCTGCTAATTT+TGG | 0.192321 | 3:-103780665 | MsaT016930.1:CDS |
AGAGTAGATTATTTGAAAAT+AGG | 0.198691 | 3:-103778394 | MsaT016930.1:CDS |
TCTCACATTTCCAGCTCTTT+TGG | 0.200246 | 3:+103778216 | None:intergenic |
GAAAGTGAATAAGCAGTTTC+TGG | 0.202627 | 3:-103780210 | MsaT016930.1:CDS |
TTCTTCTCTTGATCAACTTT+TGG | 0.216290 | 3:+103781784 | None:intergenic |
TTACGGTTGTATACCATTTC+AGG | 0.223859 | 3:+103783533 | None:intergenic |
AATTCTGAATGTTGCACTTT+TGG | 0.226098 | 3:+103782459 | None:intergenic |
AAATGGTATACAACCGTAAT+TGG | 0.232510 | 3:-103783529 | MsaT016930.1:CDS |
CACTGAATGCAAGGAAATTC+AGG | 0.241855 | 3:-103778758 | MsaT016930.1:CDS |
TGTAACTTACCTGTTTCTTA+TGG | 0.254857 | 3:-103783003 | MsaT016930.1:CDS |
AAAACTGATGAAGAATTTCT+TGG | 0.259670 | 3:+103783630 | None:intergenic |
GATGACAAACAAAATAAAAT+TGG | 0.261822 | 3:-103781649 | MsaT016930.1:CDS |
AAAATGATGGATTCAGGTTT+TGG | 0.264675 | 3:-103782558 | MsaT016930.1:CDS |
ATTAGGTTGGCCAAAATATA+TGG | 0.272286 | 3:-103778870 | MsaT016930.1:intron |
TATCCCTCCAGTTGCTGATA+TGG | 0.276376 | 3:-103783034 | MsaT016930.1:CDS |
AATGTCTTTGGCAGTGTCTT+TGG | 0.279840 | 3:+103779111 | None:intergenic |
CCAGAACTTATTACAATTGA+TGG | 0.286120 | 3:-103781886 | MsaT016930.1:CDS |
CGCTCAAAAGAAATTGAAAA+TGG | 0.288181 | 3:-103780701 | MsaT016930.1:CDS |
GAGTAGATTATTTGAAAATA+GGG | 0.292484 | 3:-103778393 | MsaT016930.1:CDS |
TTTGAGTCAACTTGTGTTCA+TGG | 0.292920 | 3:+103778138 | None:intergenic |
AATTCATCAAAACATCTCTT+TGG | 0.303541 | 3:+103783596 | None:intergenic |
ATGGTCTTTAAAGCTCTATT+TGG | 0.306293 | 3:+103779151 | None:intergenic |
ATACAGAAAATGATGGATTC+AGG | 0.307913 | 3:-103782564 | MsaT016930.1:CDS |
AGCCTATTCCTACTGCATTC+TGG | 0.312043 | 3:-103782137 | MsaT016930.1:CDS |
TCCTATAATACTGGTTACTA+TGG | 0.313926 | 3:-103783129 | MsaT016930.1:CDS |
CTACAACAACAGAAGAGATT+TGG | 0.316078 | 3:-103780756 | MsaT016930.1:CDS |
TCGCATCACTAAAATGTCTT+TGG | 0.318012 | 3:+103779099 | None:intergenic |
GGAATGTATGTCCAGGAGTT+TGG | 0.324631 | 3:-103779948 | MsaT016930.1:CDS |
TCAGGAGTCAAATGAGAAAA+TGG | 0.324783 | 3:-103778063 | MsaT016930.1:intron |
CTTCGTTTACCATGAGATAT+TGG | 0.325834 | 3:-103779817 | MsaT016930.1:intron |
CCTTTCGAGGGAATCAGTTT+AGG | 0.326996 | 3:+103781997 | None:intergenic |
CCATCAATTGTAATAAGTTC+TGG | 0.331586 | 3:+103781886 | None:intergenic |
TTTGTTTGCTTCTCTTGATC+AGG | 0.340519 | 3:+103781577 | None:intergenic |
AATGTAATGGTTGATACATT+TGG | 0.340524 | 3:-103782348 | MsaT016930.1:CDS |
GTTTCCTGACTTGCTACATA+TGG | 0.342073 | 3:-103779656 | MsaT016930.1:CDS |
GGATGTGGTTGAAAAGAATA+AGG | 0.343529 | 3:+103782480 | None:intergenic |
TCTCGTTTGCCATACTTTGA+TGG | 0.348808 | 3:-103779265 | MsaT016930.1:CDS |
CTTTAGCATCTGTCCCCTCT+TGG | 0.355618 | 3:+103781620 | None:intergenic |
GTTCCACATTACTCCCATAA+TGG | 0.357215 | 3:+103782421 | None:intergenic |
GCCATAGTAACCAGTATTAT+AGG | 0.357708 | 3:+103783128 | None:intergenic |
CATTTGCTCTGCATGCTATA+AGG | 0.358326 | 3:-103778177 | MsaT016930.1:CDS |
GGCAGTGTCTTTGGAAGGAT+TGG | 0.359255 | 3:+103779120 | None:intergenic |
GATGACATACAAGGAAGAAT+TGG | 0.361275 | 3:-103781850 | MsaT016930.1:CDS |
GTGCGAAATTCGAGTGAATC+GGG | 0.363640 | 3:-103777837 | MsaT016930.1:CDS |
TTTCATCTTGGTGGAGTACT+TGG | 0.369599 | 3:-103783662 | MsaT016930.1:CDS |
TCAGCGTGTGCAAGCTCTAC+TGG | 0.369624 | 3:-103783163 | MsaT016930.1:CDS |
GGATGAGATATTCCCGCTTC+TGG | 0.370448 | 3:+103783102 | None:intergenic |
TTTCTGTAGAAAAGAAGAAT+TGG | 0.372012 | 3:-103781044 | MsaT016930.1:CDS |
TGGTCACTTAGCACGGTTCT+TGG | 0.373788 | 3:+103780629 | None:intergenic |
TTCTTATGGTGGAAGCAATC+TGG | 0.380010 | 3:-103782989 | MsaT016930.1:CDS |
ATGCCATAGATTAGGGAATC+TGG | 0.384722 | 3:+103781946 | None:intergenic |
TCTTGATTTGAGAACAGTTT+GGG | 0.392126 | 3:+103777882 | None:intergenic |
GTCTATCATGCCATAGATTA+GGG | 0.394178 | 3:+103781939 | None:intergenic |
TTCTTTGTTGCTGCTGAGAA+AGG | 0.394757 | 3:-103779307 | MsaT016930.1:CDS |
AGTCTATCATGCCATAGATT+AGG | 0.395208 | 3:+103781938 | None:intergenic |
TCTCAGAAAGGAATCTGTTC+TGG | 0.396892 | 3:-103781476 | MsaT016930.1:intron |
AAAAGAAGAATTGGATGTAC+AGG | 0.398942 | 3:-103781035 | MsaT016930.1:CDS |
CTTCTGTTTCAGCAGATTGA+AGG | 0.398990 | 3:-103779990 | MsaT016930.1:CDS |
ACTGAAGAAAATATTGTTGT+TGG | 0.399474 | 3:-103779352 | MsaT016930.1:CDS |
GATATATCAATCTGGGAATC+AGG | 0.403548 | 3:-103778081 | MsaT016930.1:CDS |
GAGCCAGATTCCCTAATCTA+TGG | 0.403562 | 3:-103781949 | MsaT016930.1:CDS |
TTTCATTCTGCGGGAGTTAA+GGG | 0.405364 | 3:-103782381 | MsaT016930.1:CDS |
ATGGATCCTATTCCTACTAA+TGG | 0.406298 | 3:-103782234 | MsaT016930.1:CDS |
GTTCCTAAGTCCTATAATAC+TGG | 0.409319 | 3:-103783138 | MsaT016930.1:CDS |
CAGCAGTCTCCATCAAAGTA+TGG | 0.411615 | 3:+103779256 | None:intergenic |
CTTGGTGAGAGTAGGCATAC+TGG | 0.412661 | 3:+103782161 | None:intergenic |
TTGATCAGGTGTTAGTTCAC+TGG | 0.412828 | 3:+103781591 | None:intergenic |
TTCTTGATTTGAGAACAGTT+TGG | 0.414152 | 3:+103777881 | None:intergenic |
CACTCGAATTTCGCACCTAC+TGG | 0.416982 | 3:+103777844 | None:intergenic |
TCAGAGTAGGATTGTGTAGA+TGG | 0.417165 | 3:+103778285 | None:intergenic |
CGAGTTGCATACACTTTGTC+AGG | 0.417455 | 3:-103778552 | MsaT016930.1:intron |
CATATTGCAAGTGAGCTATA+AGG | 0.418930 | 3:+103778830 | None:intergenic |
CGCATTCAGAGCCAAACTCC+TGG | 0.419362 | 3:+103779937 | None:intergenic |
GCCTGTGCTCCTTCAAGAAA+AGG | 0.420899 | 3:-103779633 | MsaT016930.1:CDS |
TTTCCTGACTTGCTACATAT+GGG | 0.421164 | 3:-103779655 | MsaT016930.1:CDS |
CCACAACATGAACAAACAAT+TGG | 0.421500 | 3:+103781088 | None:intergenic |
TCAAGACCGATATATCAATC+TGG | 0.421778 | 3:-103778089 | MsaT016930.1:CDS |
TGTATATCCTCTCCATTAGT+AGG | 0.423314 | 3:+103782222 | None:intergenic |
GATCAACTTCCACTGAGTTT+CGG | 0.425661 | 3:+103781914 | None:intergenic |
GGTGGGAAAATCACATTCAA+TGG | 0.426047 | 3:-103780977 | MsaT016930.1:CDS |
CGATGAAGTACTTGAAGAAC+CGG | 0.433225 | 3:-103780915 | MsaT016930.1:intron |
GCAATATCAACCACAGAAGT+TGG | 0.433488 | 3:-103782670 | MsaT016930.1:CDS |
TGATTCCCAGATTGATATAT+CGG | 0.436292 | 3:+103778083 | None:intergenic |
AAGGGTGCGCATCAGAACTA+TGG | 0.436516 | 3:+103778585 | None:intergenic |
TGCAACTCGCCATTCTTTGA+AGG | 0.439300 | 3:+103778566 | None:intergenic |
CGGCGTAGCTTATCATTCTT+CGG | 0.442591 | 3:+103779567 | None:intergenic |
CTCTAGGAATTGCAAAGACT+TGG | 0.444404 | 3:-103777771 | MsaT016930.1:CDS |
ATGTATACACAACGCTGATT+CGG | 0.444563 | 3:+103779909 | None:intergenic |
GACCATCATCGAGGAATACT+TGG | 0.446298 | 3:+103778313 | None:intergenic |
TCTTTGTTGCTGCTGAGAAA+GGG | 0.448017 | 3:-103779306 | MsaT016930.1:CDS |
GACAGACAGTTGCAAATCAA+TGG | 0.448888 | 3:-103781740 | MsaT016930.1:CDS |
ATCATTCAGAATGAGCAACT+TGG | 0.449014 | 3:-103783385 | MsaT016930.1:CDS |
ATCATTATGTTTAGTGTTGG+AGG | 0.449050 | 3:+103778427 | None:intergenic |
GCCAAAATATATGGCCTACC+AGG | 0.452024 | 3:-103778861 | MsaT016930.1:CDS |
CCTGTGCTCCTTCAAGAAAA+GGG | 0.454880 | 3:-103779632 | MsaT016930.1:CDS |
TTGCTTCCACCATAAGAAAC+AGG | 0.456261 | 3:+103782994 | None:intergenic |
TCCTCAGTTACAACTGTTAG+TGG | 0.459002 | 3:-103782057 | MsaT016930.1:CDS |
AGGGATCTTCCCATTGTAGT+AGG | 0.461958 | 3:+103782759 | None:intergenic |
TTATTCCATTGATCAAAACT+TGG | 0.465205 | 3:+103782516 | None:intergenic |
CATCAATTGTAATAAGTTCT+GGG | 0.467890 | 3:+103781887 | None:intergenic |
CTTATAGCATGCAGAGCAAA+TGG | 0.467941 | 3:+103778178 | None:intergenic |
CAAACTGAAACTGAGACTTC+TGG | 0.468204 | 3:+103778351 | None:intergenic |
TACTATGGCGTGCCAGAAGC+GGG | 0.468456 | 3:-103783114 | MsaT016930.1:CDS |
TGAGCAACTTGGGCCTGCGC+TGG | 0.468657 | 3:-103783374 | MsaT016930.1:CDS |
TGCCGTGAAGTGATAGTGTC+TGG | 0.468924 | 3:-103778796 | MsaT016930.1:CDS |
TTTGATGGAGACTGCTGGTC+TGG | 0.471841 | 3:-103779250 | MsaT016930.1:CDS |
TAAAACTTGAATCTTCAGAT+TGG | 0.472509 | 3:+103782736 | None:intergenic |
AATATCATTATGTTTAGTGT+TGG | 0.474871 | 3:+103778424 | None:intergenic |
AGCACATCCATATCAGCAAC+TGG | 0.475712 | 3:+103783027 | None:intergenic |
TTCTTCAAGTACTTCATCGT+TGG | 0.477109 | 3:+103780919 | None:intergenic |
GTCCAGAATGCAGTAGGAAT+AGG | 0.478712 | 3:+103782135 | None:intergenic |
GATCTATAAGAGAATTCAGC+AGG | 0.480043 | 3:+103780164 | None:intergenic |
TCCTCTCCATTAGTAGGAAT+AGG | 0.482957 | 3:+103782228 | None:intergenic |
TTATACTTGCTGCTCACTCT+AGG | 0.483492 | 3:-103777787 | MsaT016930.1:CDS |
GGCAGGTTATGAGCAATAGA+AGG | 0.483523 | 3:+103783081 | None:intergenic |
ACTTACCAATGCTGCTTCAA+AGG | 0.483696 | 3:-103783341 | MsaT016930.1:intron |
AGGCCCATATGTAGCAAGTC+AGG | 0.483952 | 3:+103779652 | None:intergenic |
AACTTGAATCTTCAGATTGG+AGG | 0.484803 | 3:+103782739 | None:intergenic |
ACCAGCTTCTAAGCCTTTCG+AGG | 0.488323 | 3:+103781984 | None:intergenic |
ATTACTTCTGAGGAGGAAGC+AGG | 0.490995 | 3:-103781169 | MsaT016930.1:CDS |
GGTGCGAAATTCGAGTGAAT+CGG | 0.490997 | 3:-103777838 | MsaT016930.1:CDS |
TCATCAAAACATCTCTTTGG+CGG | 0.493031 | 3:+103783599 | None:intergenic |
CTGGCGGTATCATCCTGAAA+TGG | 0.493874 | 3:-103783546 | MsaT016930.1:CDS |
TCCCAGACACTATCACTTCA+CGG | 0.494548 | 3:+103778794 | None:intergenic |
ACAAACCTTTGAAGCAGCAT+TGG | 0.497258 | 3:+103783336 | None:intergenic |
GGAAGGATTGGCATGTCCCA+TGG | 0.498688 | 3:+103779132 | None:intergenic |
AAATCAATGGAAATTGACAT+TGG | 0.499856 | 3:-103781727 | MsaT016930.1:CDS |
TCAGCAGGGTAATTCTCCTC+TGG | 0.499997 | 3:+103780179 | None:intergenic |
AATCAATGGAAATTGACATT+GGG | 0.503687 | 3:-103781726 | MsaT016930.1:CDS |
ACATCATAGCTTTCAAGCCC+TGG | 0.503981 | 3:+103782321 | None:intergenic |
CATTATGTTTAGTGTTGGAG+GGG | 0.505283 | 3:+103778429 | None:intergenic |
GTTGATACATTTGGACAGCC+AGG | 0.507113 | 3:-103782339 | MsaT016930.1:CDS |
GATGCGCACCCTTCAAAGAA+TGG | 0.507431 | 3:-103778575 | MsaT016930.1:CDS |
TAGGATTGTGTAGATGGTAG+AGG | 0.509799 | 3:+103778291 | None:intergenic |
TTCTAAGTGGTCACTTAGCA+CGG | 0.510372 | 3:+103780622 | None:intergenic |
TTGTAGGTTATAGCTGCAAA+AGG | 0.511094 | 3:-103780272 | MsaT016930.1:intron |
AGTGTAGCATTCCACGGTGC+AGG | 0.512236 | 3:-103777748 | MsaT016930.1:intron |
ATGTGTGAACAAATCAATCA+AGG | 0.513659 | 3:+103781525 | None:intergenic |
TGCCAAAATACAGAAAATGA+TGG | 0.514444 | 3:-103782571 | MsaT016930.1:CDS |
TGCAGTAGGAATAGGCTCCT+TGG | 0.514495 | 3:+103782143 | None:intergenic |
ATGTGTTACAAGACTTCTAA+AGG | 0.514902 | 3:-103780998 | MsaT016930.1:CDS |
AGACTATGAAAAGATGTTGA+AGG | 0.515920 | 3:-103779182 | MsaT016930.1:CDS |
CCCTCGAAAGGCTTAGAAGC+TGG | 0.515949 | 3:-103781985 | MsaT016930.1:CDS |
CACGCTGATTCAATGTCTCC+AGG | 0.517950 | 3:+103783178 | None:intergenic |
TCATTATGTTTAGTGTTGGA+GGG | 0.517970 | 3:+103778428 | None:intergenic |
ACTTGAATCTTCAGATTGGA+GGG | 0.518206 | 3:+103782740 | None:intergenic |
TTTAACACAGATTACTTCTG+AGG | 0.520413 | 3:-103781179 | MsaT016930.1:intron |
TCCATTGATCAAAACTTGGA+TGG | 0.525144 | 3:+103782520 | None:intergenic |
CTTTGTTGCTGCTGAGAAAG+GGG | 0.525499 | 3:-103779305 | MsaT016930.1:CDS |
GTGGGAAAATCACATTCAAT+GGG | 0.525911 | 3:-103780976 | MsaT016930.1:CDS |
CCAATTGTTTGTTCATGTTG+TGG | 0.526305 | 3:-103781088 | MsaT016930.1:CDS |
CAAGACCGATATATCAATCT+GGG | 0.526622 | 3:-103778088 | MsaT016930.1:CDS |
CCCATAATGGAGAGAAGAGA+GGG | 0.526692 | 3:+103782434 | None:intergenic |
TATGTCCTCTCAATCTGCCT+CGG | 0.527546 | 3:-103782715 | MsaT016930.1:CDS |
CATGTCGAGACATTGCATCC+TGG | 0.528409 | 3:+103782254 | None:intergenic |
AACTTACCTGTTTCTTATGG+TGG | 0.529340 | 3:-103783000 | MsaT016930.1:CDS |
CAGCGTGTGCAAGCTCTACT+GGG | 0.531640 | 3:-103783162 | MsaT016930.1:CDS |
CTGCTGGTCTGGTAATGCTA+TGG | 0.533073 | 3:-103779239 | MsaT016930.1:CDS |
TTGTCACGGGTATAAAATCC+AGG | 0.533640 | 3:-103782272 | MsaT016930.1:CDS |
GGGGATAAACACCAATGTAA+TGG | 0.535712 | 3:-103782361 | MsaT016930.1:CDS |
GATGAATTAAGCAATCAAGT+AGG | 0.536338 | 3:-103783581 | MsaT016930.1:CDS |
GCAAAGTGGGAAAATGTTGA+AGG | 0.536852 | 3:-103780566 | MsaT016930.1:CDS |
CATGAACAAACAATTGGTAC+TGG | 0.538233 | 3:+103781094 | None:intergenic |
AATTTAAACAATATTGTCAC+GGG | 0.538538 | 3:-103782285 | MsaT016930.1:CDS |
TTCTGAAAATCCAACTTCTG+TGG | 0.541275 | 3:+103782660 | None:intergenic |
TTTCAAATAATCTACTCTCA+AGG | 0.542071 | 3:+103778399 | None:intergenic |
TGCCAAGTATTCCTCGATGA+TGG | 0.542961 | 3:-103778315 | MsaT016930.1:CDS |
GCATTTGTCCAGAATGCAGT+AGG | 0.543207 | 3:+103782129 | None:intergenic |
GCAACCTTGCTTATGAGAGC+AGG | 0.546870 | 3:+103781688 | None:intergenic |
ACAATGTATTCCAAAAGAGC+TGG | 0.547262 | 3:-103778226 | MsaT016930.1:CDS |
TTGATCAAATGTTAGCTCAT+CGG | 0.547616 | 3:+103782095 | None:intergenic |
ACATACAGTTATTTGCGTGT+TGG | 0.550948 | 3:+103782929 | None:intergenic |
CAATTTAAACAATATTGTCA+CGG | 0.551389 | 3:-103782286 | MsaT016930.1:CDS |
TCATTCAGAATGAGCAACTT+GGG | 0.553426 | 3:-103783384 | MsaT016930.1:CDS |
TTTACAACAGTCATCAGAGT+AGG | 0.553593 | 3:+103778272 | None:intergenic |
TGCTGAGAAAGGGGACTCCA+AGG | 0.553735 | 3:-103779296 | MsaT016930.1:CDS |
AGGGAACGAGAATCTTGATA+AGG | 0.553771 | 3:-103780546 | MsaT016930.1:intron |
CATACTTTGATGGAGACTGC+TGG | 0.554044 | 3:-103779255 | MsaT016930.1:CDS |
TCTGCATGCTATAAGGATAG+AGG | 0.554961 | 3:-103778170 | MsaT016930.1:CDS |
ATCTGCCTCGGTGAATACTT+CGG | 0.556680 | 3:-103782703 | MsaT016930.1:CDS |
AATGCAATAAATGCAAAAGA+TGG | 0.558178 | 3:-103780799 | MsaT016930.1:CDS |
AGCGAGAAGATGTTTGCCAA+GGG | 0.559968 | 3:-103783686 | None:intergenic |
ACACATGCCAATTATGTGAA+AGG | 0.560127 | 3:-103781135 | MsaT016930.1:CDS |
TCTTTGGCAGTGTCTTTGGA+AGG | 0.560134 | 3:+103779115 | None:intergenic |
AAAATTGGATTCAACCAAGA+GGG | 0.562248 | 3:-103781634 | MsaT016930.1:CDS |
CACAAAGATTCATTGATCAA+CGG | 0.562806 | 3:+103777503 | None:intergenic |
AGGAAATTCAGGAGTGCGAA+AGG | 0.562968 | 3:-103778747 | MsaT016930.1:intron |
ATGGATTCAGTATTATCAGA+AGG | 0.564182 | 3:+103782603 | None:intergenic |
CATGCAAGAGAGAGCAAAGT+GGG | 0.567140 | 3:-103780579 | MsaT016930.1:CDS |
GAACCATCACCAGGAAAACA+AGG | 0.569408 | 3:+103783060 | None:intergenic |
AGTAGCAATATTTCCAGCGC+AGG | 0.569879 | 3:+103783361 | None:intergenic |
GAACAGTTTGGGTGAGAGCA+AGG | 0.570733 | 3:+103777893 | None:intergenic |
TAAAATTGGATTCAACCAAG+AGG | 0.570792 | 3:-103781635 | MsaT016930.1:CDS |
TGCAACTGTCTGTCACGACA+TGG | 0.574615 | 3:+103781749 | None:intergenic |
TGATCAATGGAATAATGGGA+TGG | 0.574870 | 3:-103782508 | MsaT016930.1:CDS |
GCAACTCGCCATTCTTTGAA+GGG | 0.578144 | 3:+103778567 | None:intergenic |
TAACCAGTATTATAGGACTT+AGG | 0.578545 | 3:+103783135 | None:intergenic |
ACATATTAATAGTCTCAGAA+AGG | 0.580375 | 3:-103781488 | MsaT016930.1:CDS |
TCCACCAAGATGAAAACCCT+TGG | 0.581921 | 3:+103783670 | None:intergenic |
GTTGCTAATTGATCTGATGT+TGG | 0.582522 | 3:+103782963 | None:intergenic |
AAGGTTCAGCATTAGCTGCA+CGG | 0.583631 | 3:+103777912 | None:intergenic |
TTCATTCTGCGGGAGTTAAG+GGG | 0.586503 | 3:-103782380 | MsaT016930.1:CDS |
CAGGATGCAATGTCTCGACA+TGG | 0.588607 | 3:-103782253 | MsaT016930.1:CDS |
AAGCGAGAAGATGTTTGCCA+AGG | 0.589431 | 3:-103783687 | None:intergenic |
GGGATAGATGAACCATCACC+AGG | 0.589609 | 3:+103783051 | None:intergenic |
TGATAGTGTCTGGGAAGCGA+TGG | 0.590031 | 3:-103778786 | MsaT016930.1:CDS |
TTACTATGGCGTGCCAGAAG+CGG | 0.592212 | 3:-103783115 | MsaT016930.1:CDS |
CCTGAAAGAAGGACAAAGAG+TGG | 0.592455 | 3:-103779855 | MsaT016930.1:CDS |
AAATAGAGCTTTAAAGACCA+TGG | 0.593540 | 3:-103779149 | MsaT016930.1:CDS |
CAAACGAGAAGCTGTCACCT+TGG | 0.594598 | 3:+103779279 | None:intergenic |
AAGTAGGATTCTCCTCAGAC+TGG | 0.594890 | 3:-103783565 | MsaT016930.1:CDS |
CTTTAGCGTCTGTCCCCTCG+TGG | 0.599122 | 3:+103781821 | None:intergenic |
TCCTATTCCTACTAATGGAG+AGG | 0.602402 | 3:-103782229 | MsaT016930.1:CDS |
AAATGTATCAACCATTACAT+TGG | 0.602722 | 3:+103782350 | None:intergenic |
CCCACTAACAGTTGTAACTG+AGG | 0.603428 | 3:+103782056 | None:intergenic |
AACACAGATTACTTCTGAGG+AGG | 0.604308 | 3:-103781176 | MsaT016930.1:intron |
AAAGAAGAATTGGATGTACA+GGG | 0.605113 | 3:-103781034 | MsaT016930.1:CDS |
CCAAAATATATGGCCTACCA+GGG | 0.605422 | 3:-103778860 | MsaT016930.1:CDS |
TTACTTCTGAGGAGGAAGCA+GGG | 0.608500 | 3:-103781168 | MsaT016930.1:CDS |
ATTCACCGAGGCAGATTGAG+AGG | 0.610362 | 3:+103782710 | None:intergenic |
CTGTGCTCCTTCAAGAAAAG+GGG | 0.610873 | 3:-103779631 | MsaT016930.1:CDS |
GCTTGAAAGCTATGATGTGA+TGG | 0.612988 | 3:-103782316 | MsaT016930.1:CDS |
TCTCCATTATGGGAGTAATG+TGG | 0.616220 | 3:-103782424 | MsaT016930.1:CDS |
CATCACCAGGAAAACAAGGC+AGG | 0.617573 | 3:+103783064 | None:intergenic |
CAGGAGTTTGGCTCTGAATG+CGG | 0.618695 | 3:-103779936 | MsaT016930.1:CDS |
TGGATTCAGTATTATCAGAA+GGG | 0.619302 | 3:+103782604 | None:intergenic |
AATAGAGCTTTAAAGACCAT+GGG | 0.619881 | 3:-103779148 | MsaT016930.1:CDS |
TTGATACATTTGGACAGCCA+GGG | 0.623297 | 3:-103782338 | MsaT016930.1:CDS |
CAAAGTGGGAAAATGTTGAA+GGG | 0.624977 | 3:-103780565 | MsaT016930.1:CDS |
TGCGAAATTCGAGTGAATCG+GGG | 0.624993 | 3:-103777836 | MsaT016930.1:CDS |
GCAGGAGGAATATATGAACC+TGG | 0.625899 | 3:-103783196 | MsaT016930.1:intron |
CCTCAGTTACAACTGTTAGT+GGG | 0.626164 | 3:-103782056 | MsaT016930.1:CDS |
CCAGCTTCTAAGCCTTTCGA+GGG | 0.626326 | 3:+103781985 | None:intergenic |
GTTACAAGACTTCTAAAGGT+GGG | 0.626500 | 3:-103780994 | MsaT016930.1:CDS |
AGAATGATAAGCTACGCCGT+TGG | 0.627014 | 3:-103779563 | MsaT016930.1:intron |
CCTAAACTGATTCCCTCGAA+AGG | 0.627647 | 3:-103781997 | MsaT016930.1:CDS |
CATGGTAAACGAAGGTACGA+AGG | 0.628852 | 3:+103779826 | None:intergenic |
TTTAGAAGTCTTGTAACACA+TGG | 0.632450 | 3:+103781000 | None:intergenic |
GCAGAGCAAATGGTACACTC+TGG | 0.633761 | 3:+103778188 | None:intergenic |
CATCCATATCAGCAACTGGA+GGG | 0.633921 | 3:+103783031 | None:intergenic |
AAAGCATGCTCACTTACTGA+AGG | 0.634634 | 3:-103780678 | MsaT016930.1:CDS |
ATGGTAAACGAAGGTACGAA+GGG | 0.635264 | 3:+103779827 | None:intergenic |
CAGTATGCCTACTCTCACCA+AGG | 0.636206 | 3:-103782160 | MsaT016930.1:CDS |
TATGCCTGCTCTCATAAGCA+AGG | 0.636968 | 3:-103781692 | MsaT016930.1:CDS |
AGGATGATACCGCCAGTCTG+AGG | 0.637708 | 3:+103783553 | None:intergenic |
TGTTACAAGACTTCTAAAGG+TGG | 0.638383 | 3:-103780995 | MsaT016930.1:CDS |
ACTTGGAGTGTAGCATTCCA+CGG | 0.640972 | 3:-103777754 | MsaT016930.1:CDS |
AAAGAAATGATCATATACGT+TGG | 0.641068 | 3:+103779324 | None:intergenic |
TGGAATTTAATCTGATGCCG+TGG | 0.642107 | 3:+103782181 | None:intergenic |
GCCGTGAAGTGATAGTGTCT+GGG | 0.643577 | 3:-103778795 | MsaT016930.1:CDS |
GATAGACTGCCGAAACTCAG+TGG | 0.644616 | 3:-103781923 | MsaT016930.1:CDS |
TCCCATAATGGAGAGAAGAG+AGG | 0.649812 | 3:+103782433 | None:intergenic |
ACTAATGGAGAGGATATACA+AGG | 0.650656 | 3:-103782219 | MsaT016930.1:CDS |
ATTAACAACATGTCTAACAG+TGG | 0.650867 | 3:+103782632 | None:intergenic |
ATAGGCTCCTTGGTGAGAGT+AGG | 0.651101 | 3:+103782153 | None:intergenic |
GTTTCTGGATATCATTCCAG+AGG | 0.661258 | 3:-103780195 | MsaT016930.1:CDS |
TAGGATTCTCCTCAGACTGG+CGG | 0.662995 | 3:-103783562 | MsaT016930.1:CDS |
CAATATCTCATGGTAAACGA+AGG | 0.666016 | 3:+103779818 | None:intergenic |
AGAATTGGATTCAACCACGA+GGG | 0.666202 | 3:-103781835 | MsaT016930.1:CDS |
AGCTGTTCTCTCATGCCAGT+AGG | 0.676221 | 3:-103777859 | MsaT016930.1:CDS |
ATCTATAAGAGAATTCAGCA+GGG | 0.680316 | 3:+103780165 | None:intergenic |
TCGAGGAATACTTGGCACGA+CGG | 0.681417 | 3:+103778321 | None:intergenic |
AAATTGGATTCAACCAAGAG+GGG | 0.683045 | 3:-103781633 | MsaT016930.1:CDS |
GGCAGAACTAAATTTGACCA+CGG | 0.684062 | 3:-103782198 | MsaT016930.1:CDS |
GAATTGGATTCAACCACGAG+GGG | 0.685446 | 3:-103781834 | MsaT016930.1:CDS |
GGAGGGGATATCATCAACAA+CGG | 0.699125 | 3:+103778445 | None:intergenic |
ACATCCATATCAGCAACTGG+AGG | 0.703827 | 3:+103783030 | None:intergenic |
GATGATGAAGATGACATACA+AGG | 0.709470 | 3:-103781859 | MsaT016930.1:CDS |
CCATAATGGAGAGAAGAGAG+GGG | 0.709801 | 3:+103782435 | None:intergenic |
TCATGCAAGAGAGAGCAAAG+TGG | 0.716033 | 3:-103780580 | MsaT016930.1:CDS |
ATAACAACACACCTGCACCG+TGG | 0.731435 | 3:+103777737 | None:intergenic |
ATGGTAGAGGACCATCATCG+AGG | 0.748774 | 3:+103778304 | None:intergenic |
AAGAATTGGATTCAACCACG+AGG | 0.755598 | 3:-103781836 | MsaT016930.1:CDS |
ATCTTCCGAAGTATTCACCG+AGG | 0.761656 | 3:+103782698 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 103777502 | 103783699 | 103777502 | ID=MsaG016930 |
Chr3 | mRNA | 103777502 | 103783699 | 103777502 | ID=MsaT016930.1;Parent=MsaG016930 |
Chr3 | exon | 103777502 | 103777583 | 103777502 | ID=MsaT016930.1.exon15;Parent=MsaT016930.1 |
Chr3 | CDS | 103777502 | 103777583 | 103777502 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103777749 | 103777975 | 103777749 | ID=MsaT016930.1.exon14;Parent=MsaT016930.1 |
Chr3 | CDS | 103777749 | 103777975 | 103777749 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103778064 | 103778468 | 103778064 | ID=MsaT016930.1.exon13;Parent=MsaT016930.1 |
Chr3 | CDS | 103778064 | 103778468 | 103778064 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103778553 | 103778610 | 103778553 | ID=MsaT016930.1.exon12;Parent=MsaT016930.1 |
Chr3 | CDS | 103778553 | 103778610 | 103778553 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103778748 | 103778887 | 103778748 | ID=MsaT016930.1.exon11;Parent=MsaT016930.1 |
Chr3 | CDS | 103778748 | 103778887 | 103778748 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103779096 | 103779399 | 103779096 | ID=MsaT016930.1.exon10;Parent=MsaT016930.1 |
Chr3 | CDS | 103779096 | 103779399 | 103779096 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103779564 | 103779709 | 103779564 | ID=MsaT016930.1.exon9;Parent=MsaT016930.1 |
Chr3 | CDS | 103779564 | 103779709 | 103779564 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103779818 | 103780018 | 103779818 | ID=MsaT016930.1.exon8;Parent=MsaT016930.1 |
Chr3 | CDS | 103779818 | 103780018 | 103779818 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103780160 | 103780288 | 103780160 | ID=MsaT016930.1.exon7;Parent=MsaT016930.1 |
Chr3 | CDS | 103780160 | 103780288 | 103780160 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103780547 | 103780828 | 103780547 | ID=MsaT016930.1.exon6;Parent=MsaT016930.1 |
Chr3 | CDS | 103780547 | 103780828 | 103780547 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103780916 | 103781191 | 103780916 | ID=MsaT016930.1.exon5;Parent=MsaT016930.1 |
Chr3 | CDS | 103780916 | 103781191 | 103780916 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103781477 | 103782816 | 103781477 | ID=MsaT016930.1.exon4;Parent=MsaT016930.1 |
Chr3 | CDS | 103781477 | 103782816 | 103781477 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103782935 | 103783214 | 103782935 | ID=MsaT016930.1.exon3;Parent=MsaT016930.1 |
Chr3 | CDS | 103782935 | 103783214 | 103782935 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103783342 | 103783414 | 103783342 | ID=MsaT016930.1.exon2;Parent=MsaT016930.1 |
Chr3 | CDS | 103783342 | 103783414 | 103783342 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Chr3 | exon | 103783515 | 103783699 | 103783515 | ID=MsaT016930.1.exon1;Parent=MsaT016930.1 |
Chr3 | CDS | 103783515 | 103783699 | 103783515 | ID=cds.MsaT016930.1;Parent=MsaT016930.1 |
Gene Sequence |
Protein sequence |