AlfalfaGEDB | MsaG016979

M. sativa ssp. caerulea / MsaG016979

KEGG: -
GO: GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
PFAM: PF16135.8

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016979	XP_013461784.1	58.570	811	159	13	1	645	1	800	0.0	782

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016979	sp\|F4IXE7\|IDM1_ARATH	28.365	416	241	6	281	642	617	1029	6.44e-44	173

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016979	tr\|A0A072V1D9\|A0A072V1D9_MEDTR	58.570	811	159	13	1	645	1	800	0.0	782

TFs/TRs:

Gene ID	Type	Classification
MsaG016979	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003811	MsaG016979	0.808819	4.376444e-50	7.263962e-48
MsaG004993	MsaG016979	0.814262	2.910088e-51	5.521901e-49
MsaG012012	MsaG016979	0.810371	2.038546e-50	3.512964e-48
MsaG012174	MsaG016979	0.814622	2.424481e-51	4.642102e-49
MsaG014961	MsaG016979	0.804348	3.804218e-49	5.681022e-47
MsaG015348	MsaG016979	0.838734	4.439167e-57	1.665693e-54
MsaG016979	MsaG017267	0.801100	1.768388e-48	2.451024e-46
MsaG016979	MsaG017291	0.804590	3.389765e-49	5.090301e-47
MsaG016979	MsaG018989	0.837592	8.708485e-57	3.154206e-54
MsaG016979	MsaG019582	0.830098	6.390238e-55	1.854610e-52
MsaG016979	MsaG024089	0.834748	4.559161e-56	1.515782e-53
MsaG016979	MsaG027626	0.806163	1.592781e-49	2.481334e-47
MsaG016979	MsaG028875	0.801396	1.539362e-48	2.147969e-46
MsaG016979	MsaG039745	0.842459	4.749341e-58	2.004358e-55
MsaG016979	MsaG041969	0.807038	1.043122e-49	1.658915e-47
MsaG016979	MsaG002508	0.839512	2.796616e-57	1.075094e-54
MsaG016979	MsaG031596	0.806634	1.268466e-49	1.998280e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016979	MtrunA17_Chr3g0134811	58.570	811	159	13	1	645	1	800	0.0	782
MsaG016979	MtrunA17_Chr7g0270101	49.686	797	248	11	1	645	1	796	0.0	671
MsaG016979	MtrunA17_Chr5g0407211	59.491	432	98	6	285	645	3	428	6.13e-169	489
MsaG016979	MtrunA17_Chr5g0407251	59.080	435	95	7	285	645	3	428	3.38e-166	482
MsaG016979	MtrunA17_Chr3g0134821	48.154	623	224	16	89	645	252	841	2.31e-157	474
MsaG016979	MtrunA17_Chr3g0134821	42.035	226	94	4	1	189	1	226	9.72e-32	131
MsaG016979	MtrunA17_Chr3g0134851	42.986	442	122	7	263	638	89	466	8.88e-97	305
MsaG016979	MtrunA17_Chr5g0430361	35.242	454	211	11	253	638	621	1059	4.73e-76	263
MsaG016979	MtrunA17_Chr3g0105291	37.560	418	194	10	284	640	602	1013	1.19e-75	262
MsaG016979	MtrunA17_Chr2g0316251	31.415	417	217	9	281	636	758	1166	1.64e-51	192
MsaG016979	MtrunA17_Chr1g0205451	33.884	242	149	2	403	636	774	1012	5.82e-37	148
MsaG016979	MtrunA17_Chr1g0185491	32.510	243	152	3	403	638	985	1222	3.09e-35	143
MsaG016979	MtrunA17_Chr7g0259981	30.435	207	139	2	438	642	95	298	1.11e-27	114
MsaG016979	MtrunA17_Chr1g0182481	25.573	262	169	6	399	640	641	896	1.25e-23	106
MsaG016979	MtrunA17_Chr7g0265211	27.170	265	157	7	403	643	698	950	7.48e-23	103
MsaG016979	MtrunA17_Chr1g0179841	27.308	260	157	6	403	638	553	804	1.04e-21	100
MsaG016979	MtrunA17_Chr2g0320451	30.220	182	118	4	464	642	852	1027	5.59e-20	95.1
MsaG016979	MtrunA17_Chr4g0025251	25.581	258	163	6	407	640	453	705	4.74e-18	88.6
MsaG016979	MtrunA17_Chr4g0028111	25.551	227	144	4	403	608	337	559	6.74e-17	84.7
MsaG016979	MtrunA17_Chr3g0139561	32.961	179	99	7	436	607	191	355	3.74e-16	80.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG016979	AT5G58610.8	34.240	441	225	10	256	636	573	1008	6.60e-65	231
MsaG016979	AT5G58610.2	34.240	441	225	10	256	636	573	1008	6.60e-65	231
MsaG016979	AT5G58610.4	34.921	441	222	12	256	636	342	777	2.89e-64	228
MsaG016979	AT5G58610.3	34.921	441	222	12	256	636	573	1008	2.35e-63	227
MsaG016979	AT5G58610.5	34.921	441	222	12	256	636	564	999	4.04e-63	227
MsaG016979	AT5G58610.7	34.921	441	222	12	256	636	564	999	4.63e-63	226
MsaG016979	AT5G58610.1	32.414	435	215	10	256	636	564	973	9.69e-58	211
MsaG016979	AT5G58610.6	32.414	435	215	10	256	636	564	973	1.46e-57	210
MsaG016979	AT5G58610.10	32.905	389	196	10	256	584	573	956	2.26e-50	189
MsaG016979	AT5G58610.9	33.676	389	193	12	256	584	564	947	1.85e-48	183
MsaG016979	AT5G36740.5	28.675	415	231	11	281	636	541	949	4.12e-45	173
MsaG016979	AT5G36740.1	28.675	415	231	11	281	636	541	949	4.12e-45	173
MsaG016979	AT3G14980.5	28.365	416	241	6	281	642	572	984	6.45e-45	173
MsaG016979	AT3G14980.6	28.365	416	241	6	281	642	617	1029	6.55e-45	173
MsaG016979	AT3G14980.1	28.365	416	241	6	281	642	617	1029	6.55e-45	173
MsaG016979	AT3G14980.2	28.365	416	241	6	281	642	617	1029	6.55e-45	173
MsaG016979	AT5G63900.1	36.626	243	138	7	400	638	312	542	1.18e-44	168
MsaG016979	AT3G14980.3	28.365	416	241	6	281	642	617	1029	2.19e-44	171
MsaG016979	AT1G05380.3	27.778	414	237	8	281	636	516	925	2.33e-42	165
MsaG016979	AT1G05380.1	27.778	414	237	8	281	636	516	925	2.33e-42	165
MsaG016979	AT1G05380.2	27.778	414	237	8	281	636	516	925	2.33e-42	165
MsaG016979	AT4G14920.2	24.951	509	300	10	187	639	504	986	2.28e-37	150
MsaG016979	AT4G14920.1	24.951	509	300	10	187	639	504	986	2.28e-37	150
MsaG016979	AT4G14920.3	24.951	509	300	10	187	639	504	986	2.56e-37	149
MsaG016979	AT5G36670.4	26.450	431	234	13	281	636	541	963	2.18e-36	147
MsaG016979	AT5G36670.5	26.450	431	234	13	281	636	541	963	2.18e-36	147
MsaG016979	AT5G58610.11	31.624	351	175	12	256	546	564	909	2.05e-34	140
MsaG016979	AT5G36670.2	27.451	357	194	11	281	578	541	891	5.11e-34	139
MsaG016979	AT5G36740.2	27.451	357	194	11	281	578	541	891	5.11e-34	139
MsaG016979	AT5G36740.3	27.451	357	194	11	281	578	541	891	5.11e-34	139
MsaG016979	AT5G36740.4	35.266	207	126	2	438	636	600	806	1.60e-33	138
MsaG016979	AT5G36670.1	30.493	223	129	4	438	636	753	973	3.98e-25	112
MsaG016979	AT5G36670.3	30.493	223	129	4	438	636	600	820	4.01e-25	111
MsaG016979	AT2G36720.1	27.799	259	157	6	402	637	723	974	1.50e-23	106
MsaG016979	AT2G36720.2	27.799	259	157	6	402	637	723	974	1.50e-23	106
MsaG016979	AT2G37520.1	29.057	265	156	8	399	640	564	819	2.88e-23	105
MsaG016979	AT3G14980.4	25.857	321	181	6	281	547	617	934	8.59e-23	104
MsaG016979	AT2G27980.1	27.778	270	158	8	399	640	801	1061	1.13e-22	103
MsaG016979	AT3G53680.2	29.310	232	139	6	399	611	582	807	1.56e-21	100
MsaG016979	AT3G53680.1	29.310	232	139	6	399	611	580	805	1.62e-21	100

Find 123 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACATCTTCTTTCTT+TGG	0.186886	3:+104425605	MsaT016979.1:CDS
TGTGCGCAAAAGTTTCATTT+TGG	0.198708	3:+104427124	MsaT016979.1:CDS
GTTGCAACTATAAGAATTTA+TGG	0.208645	3:+104427523	MsaT016979.1:CDS
TTTCTTTGGGTTGGAAGTTT+TGG	0.214565	3:+104425619	MsaT016979.1:CDS
AGATTAGCTGCAACTGTTAT+TGG	0.219778	3:-104427268	None:intergenic
TACCATTCTCTTACAGCTTC+TGG	0.232489	3:-104425519	None:intergenic
CCAACTATTGATGCTTTATC+TGG	0.251503	3:+104427391	MsaT016979.1:CDS
CATCAACGCTTGAACTTTCA+TGG	0.267526	3:+104427457	MsaT016979.1:CDS
AAGTGCTGGTAGAAAGAATT+TGG	0.277416	3:+104425572	MsaT016979.1:CDS
TTGATGTCGCTGCTGCTTCT+AGG	0.279398	3:-104425956	None:intergenic
AAACAACATCTTCTTTCTTT+GGG	0.299298	3:+104425606	MsaT016979.1:CDS
AGAGAATGGTACCGCTTAAC+AGG	0.307427	3:+104425531	MsaT016979.1:CDS
TTATGTCTAAAGAAGCTGTT+AGG	0.318220	3:+104427241	MsaT016979.1:CDS
GAAGGTATTCACTTGTTTCT+TGG	0.322354	3:+104426457	MsaT016979.1:CDS
GTTGATAAAGAATCAAGTTT+TGG	0.324712	3:+104426479	MsaT016979.1:CDS
CATGGCCTTGTATTGCTTGA+TGG	0.358298	3:+104427818	MsaT016979.1:CDS
TTTAGGTCTCGATCGAGTTC+CGG	0.360500	3:+104426996	MsaT016979.1:intron
AAGGCCATGTAGGTCTATTC+AGG	0.369107	3:-104427804	None:intergenic
TGCTGCAGTTGAAGGGCGTT+GGG	0.371602	3:-104425752	None:intergenic
GAAAATGGGTAAAGTCATTT+CGG	0.376245	3:+104427501	MsaT016979.1:CDS
CCGTAGTGAGACGAAGAAAT+TGG	0.380338	3:-104425781	None:intergenic
CCAGATAAAGCATCAATAGT+TGG	0.388520	3:-104427391	None:intergenic
AAATTGACACTTGTCTTCTC+TGG	0.394375	3:-104427731	None:intergenic
GGATTCACTCGGTCGCTTTG+TGG	0.394481	3:-104426059	None:intergenic
AGTTGCTGCTGCTTCCTCCT+TGG	0.398593	3:-104426021	None:intergenic
CGGTAGCTCTTTCGATTGTA+AGG	0.400501	3:-104425926	None:intergenic
AACATCTTCTTTCTTTGGGT+TGG	0.401046	3:+104425610	MsaT016979.1:CDS
CGTGTTAAATTCAATATCAC+TGG	0.404641	3:+104426591	MsaT016979.1:CDS
ATCGAGTTCCGGATGGAGAT+TGG	0.415728	3:+104427007	MsaT016979.1:CDS
TAGGTCTATTCAGGGATTTA+AGG	0.416516	3:-104427795	None:intergenic
ATTCAATATCACTGGATTTG+AGG	0.420799	3:+104426599	MsaT016979.1:CDS
GGTTTCTCTTTCGACGGCAA+TGG	0.423351	3:-104425990	None:intergenic
GCAGTGGTGAAAAGAAGAAT+TGG	0.424434	3:+104427188	MsaT016979.1:CDS
AGTAACATTGTTGTCAAAAG+AGG	0.427286	3:+104426531	MsaT016979.1:CDS
GATTCTGAAACCTCTAGTTC+CGG	0.430859	3:+104426181	MsaT016979.1:CDS
ATTCTGAAACCTCTAGTTCC+GGG	0.432792	3:+104426182	MsaT016979.1:CDS
TTTGGGTGTGTAAAGGCGTT+AGG	0.435106	3:+104427142	MsaT016979.1:CDS
CAGCAGCGACATCAATCTAT+TGG	0.437179	3:+104425964	MsaT016979.1:CDS
TATAAGAATTTATGGTCAAA+AGG	0.441015	3:+104427531	MsaT016979.1:CDS
ACCATCCACTAGTATCTTGT+TGG	0.443708	3:+104426647	MsaT016979.1:CDS
CAGATAAAGCATCAATAGTT+GGG	0.446006	3:-104427390	None:intergenic
GCTTCCTCCTTGGATTCTCT+CGG	0.449759	3:-104426011	None:intergenic
CATGCAAGCAAGAATGTAGA+TGG	0.449812	3:+104427070	MsaT016979.1:CDS
TCAGAGGCTTCTGGTAAGAA+AGG	0.450319	3:+104426405	MsaT016979.1:CDS
GGCGTTGTTGCTGCAGTTGA+AGG	0.450714	3:-104425760	None:intergenic
TCAGAGGATTGTGGTAGAAG+AGG	0.451281	3:+104426348	MsaT016979.1:CDS
TGTGTAAAGGCGTTAGGACT+TGG	0.455855	3:+104427148	MsaT016979.1:CDS
GACACATGGACAAAAGCGTT+TGG	0.456899	3:+104427694	MsaT016979.1:CDS
CAGAGGATTGTGGTAGAAGA+GGG	0.460042	3:+104426349	MsaT016979.1:CDS
TCTACATTCTTGCTTGCATG+TGG	0.460867	3:-104427067	None:intergenic
ACAGCTTCTGGACAATGCTC+AGG	0.460946	3:-104425507	None:intergenic
TTGCTGCAGTTGAAGGGCGT+TGG	0.467467	3:-104425753	None:intergenic
CAGTTGCAGCTAATCTAACT+TGG	0.467585	3:+104427275	MsaT016979.1:CDS
GAGAAACAGTTGACACGCTT+AGG	0.478300	3:+104427631	MsaT016979.1:CDS
TGATATTGCTGCTGCTTCCT+CGG	0.487335	3:-104426080	None:intergenic
ATCAGAAGTTGATTCAGAAC+TGG	0.492607	3:-104426155	None:intergenic
ACTAGTATCTTGTTGGGAGA+TGG	0.496603	3:+104426654	MsaT016979.1:CDS
TTGTCTTCGATATTGTTCCT+TGG	0.503462	3:-104427578	None:intergenic
GCTGTTTCCTCAGATTCTCT+CGG	0.506010	3:-104425881	None:intergenic
CCATCCACTAGTATCTTGTT+GGG	0.506128	3:+104426648	MsaT016979.1:CDS
ACCATCAGAAGTTGATTCAT+CGG	0.513368	3:-104426116	None:intergenic
ACTGGATTTGAGGCTCATGC+TGG	0.514944	3:+104426609	MsaT016979.1:CDS
AGGCCATGTAGGTCTATTCA+GGG	0.515704	3:-104427803	None:intergenic
CAGAGGCTTCTGGTAAGAAA+GGG	0.518719	3:+104426406	MsaT016979.1:CDS
GGGAGATGGAAGGTCGTTGT+TGG	0.519941	3:+104426668	MsaT016979.1:CDS
TGCTGCTTCTAGGATTCCCT+CGG	0.525559	3:-104425946	None:intergenic
AGAGAAACCGAGAGAATCCA+AGG	0.534686	3:+104426004	MsaT016979.1:CDS
TATGTCTAAAGAAGCTGTTA+GGG	0.535737	3:+104427242	MsaT016979.1:CDS
GGTCGTTGTTGGACTGTCAA+AGG	0.544818	3:+104426679	MsaT016979.1:CDS
GTCCAGAAGCTGTAAGAGAA+TGG	0.545236	3:+104425517	MsaT016979.1:CDS
GTAACATTGTTGTCAAAAGA+GGG	0.548060	3:+104426532	MsaT016979.1:CDS
AACATTGTTGTCAAAAGAGG+GGG	0.548399	3:+104426534	MsaT016979.1:CDS
TCCGATGAATCAACTTCTGA+TGG	0.549352	3:+104426115	MsaT016979.1:CDS
GAGAAGAATTCAGAGGATTG+TGG	0.552564	3:+104426339	MsaT016979.1:CDS
ACGCTTAGGAGTTGAAAGCT+TGG	0.553379	3:+104427645	MsaT016979.1:CDS
TGATTCAGAACTGGCACTAG+AGG	0.557607	3:-104426146	None:intergenic
TCTCTCGGTTTCTCTTTCGA+CGG	0.559043	3:-104425996	None:intergenic
CAAGCAATACAAGGCCATGT+AGG	0.560703	3:-104427814	None:intergenic
GCTGCTTCCTCGGATTCACT+CGG	0.560843	3:-104426070	None:intergenic
TTCTGAATCAACTTCTGATG+AGG	0.561379	3:+104426159	MsaT016979.1:CDS
AACTACCATCAAGCAATACA+AGG	0.564139	3:-104427823	None:intergenic
CCAATTTCTTCGTCTCACTA+CGG	0.565751	3:+104425781	MsaT016979.1:CDS
GCGTAGAGTTGCATTGAAGA+AGG	0.567568	3:+104425721	MsaT016979.1:CDS
CAAGATCGTAAAGAAAGTGC+TGG	0.568933	3:+104425558	MsaT016979.1:CDS
GATGTTAATAAAGCTATAGT+AGG	0.569536	3:+104426205	MsaT016979.1:CDS
GGTAGCCACGAAAACTATCT+CGG	0.575564	3:-104427557	None:intergenic
TCTTCAATGCAACTCTACGC+AGG	0.577409	3:-104425718	None:intergenic
GGACAGAACCAATCTCCATC+CGG	0.578561	3:-104427015	None:intergenic
GCGTTGTTGCTGCAGTTGAA+GGG	0.579643	3:-104425759	None:intergenic
CTACATTCTTGCTTGCATGT+GGG	0.586256	3:-104427066	None:intergenic
ATTAACATCCCCGGAACTAG+AGG	0.586617	3:-104426191	None:intergenic
AGGTAGTGATAAAAGAGGAA+AGG	0.591418	3:+104426296	MsaT016979.1:intron
TCAAAGACGGAAGGTGAAAG+AGG	0.593891	3:+104426435	MsaT016979.1:CDS
AAAGAGACCGAGAGAATCTG+AGG	0.596629	3:+104425874	MsaT016979.1:CDS
TTTAATGGAGAAGAATTCAG+AGG	0.596793	3:+104426332	MsaT016979.1:CDS
AATCCCTGAATAGACCTACA+TGG	0.602735	3:+104427800	MsaT016979.1:CDS
TATAGCTTTATTAACATCCC+CGG	0.602739	3:-104426200	None:intergenic
ATCTCCCAACAAGATACTAG+TGG	0.609147	3:-104426652	None:intergenic
GAAAGGGAAGGTATCAAAGA+CGG	0.611839	3:+104426422	MsaT016979.1:CDS
GATCTTGTAGCCCTGTTAAG+CGG	0.613318	3:-104425542	None:intergenic
AGACGGAAGGTGAAAGAGGA+AGG	0.613430	3:+104426439	MsaT016979.1:CDS
CCCAACAAGATACTAGTGGA+TGG	0.615712	3:-104426648	None:intergenic
CTGAGGATGCTATAGACACA+TGG	0.615930	3:+104427680	MsaT016979.1:CDS
TACAATCGAAAGAGCTACCG+AGG	0.616630	3:+104425929	MsaT016979.1:CDS
AAAAGAGATTGAGAGAACTG+AGG	0.623971	3:+104425808	MsaT016979.1:CDS
GGTCTCGATCGAGTTCCGGA+TGG	0.624514	3:+104427000	MsaT016979.1:intron
GGGACTAATGTATTCTGTCG+TGG	0.624640	3:+104426507	MsaT016979.1:CDS
AAAGAAGAGAAAGTTGAATG+TGG	0.626130	3:+104427339	MsaT016979.1:CDS
TCGGTAGGTAGTGATAAAAG+AGG	0.626684	3:+104426291	MsaT016979.1:intron
TAACATTGTTGTCAAAAGAG+GGG	0.635378	3:+104426533	MsaT016979.1:CDS
GGCTTCTGGTAAGAAAGGGA+AGG	0.643581	3:+104426410	MsaT016979.1:CDS
TCAAGTCACATTGAGAGCAG+TGG	0.644287	3:+104427172	MsaT016979.1:CDS
TTCTGAAACCTCTAGTTCCG+GGG	0.647653	3:+104426183	MsaT016979.1:CDS
AAAGCGACCGAGTGAATCCG+AGG	0.649813	3:+104426063	MsaT016979.1:CDS
GTATCTTGTTGGGAGATGGA+AGG	0.650656	3:+104426658	MsaT016979.1:CDS
AAGGAACAATATCGAAGACA+AGG	0.663403	3:+104427580	MsaT016979.1:CDS
GAGAATGGTACCGCTTAACA+GGG	0.663915	3:+104425532	MsaT016979.1:CDS
TAGAGTTGCATTGAAGAAGG+AGG	0.673865	3:+104425724	MsaT016979.1:CDS
GCTGCAGTTGAAGGGCGTTG+GGG	0.675816	3:-104425751	None:intergenic
GGGAAGGTATCAAAGACGGA+AGG	0.682930	3:+104426426	MsaT016979.1:CDS
ACAATCGAAAGAGCTACCGA+GGG	0.709602	3:+104425930	MsaT016979.1:CDS
TGTGTCTATAGCATCCTCAG+AGG	0.722624	3:-104427677	None:intergenic
GAAACCGAGAGAATCCAAGG+AGG	0.723363	3:+104426007	MsaT016979.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	104425468	104427837	104425468	ID=MsaG016979
Chr3	mRNA	104425468	104427837	104425468	ID=MsaT016979.1;Parent=MsaG016979
Chr3	exon	104425468	104425640	104425468	ID=MsaT016979.1.exon1;Parent=MsaT016979.1
Chr3	CDS	104425468	104425640	104425468	ID=cds.MsaT016979.1;Parent=MsaT016979.1
Chr3	exon	104425718	104426226	104425718	ID=MsaT016979.1.exon2;Parent=MsaT016979.1
Chr3	CDS	104425718	104426226	104425718	ID=cds.MsaT016979.1;Parent=MsaT016979.1
Chr3	exon	104426298	104426716	104426298	ID=MsaT016979.1.exon3;Parent=MsaT016979.1
Chr3	CDS	104426298	104426716	104426298	ID=cds.MsaT016979.1;Parent=MsaT016979.1
Chr3	exon	104427001	104427837	104427001	ID=MsaT016979.1.exon4;Parent=MsaT016979.1
Chr3	CDS	104427001	104427837	104427001	ID=cds.MsaT016979.1;Parent=MsaT016979.1

Gene Sequence

>MsaT016979.1

ATGGATTCTCGTTCACTACCTCCTGATATCAACATAAAACCTGAGCATTGTCCAGAAGCTGTAAGAGAATGGTACCGCTTAACAGGGCTACAAGATCGTAAAGAAAGTGCTGGTAGAAAGAATTTGGCTTTGAAAGCAAAACAACATCTTCTTTCTTTGGGTTGGAAGTTTTGCCTGCGTAGAGTTGCATTGAAGAAGGAGGTGTTCCCCAACGCCCTTCAACTGCAGCAACAACGCCAATTTCTTCGTCTCACTACGGTTGAAAAAGAGATTGAGAGAACTGAGGAAACAGAAAGAATAACAATTTCTTTGTCTCCATTGCAGTCTAAAAAGAGACCGAGAGAATCTGAGGAAACAGCAGCAATATCAATTTATTCGTCTCCTTACAATCGAAAGAGCTACCGAGGGAATCCTAGAAGCAGCAGCGACATCAATCTATTGGTCTCCATTGCCGTCGAAAGAGAAACCGAGAGAATCCAAGGAGGAAGCAGCAGCAACTACAATTTCTTTGTCTCCACAAAGCGACCGAGTGAATCCGAGGAAGCAGCAGCAATATCAATCTCTTCTGAATCCGATGAATCAACTTCTGATGGTTCTGAAGCCTCTAGTGCCAGTTCTGAATCAACTTCTGATGAGGATTCTGAAACCTCTAGTTCCGGGGATGTTAATAAAGCTATAGTAGGTAGTGATAAAAGAGGAAAGGTTTTAAAAACGAGTTTAATGGAGAAGAATTCAGAGGATTGTGGTAGAAGAGGGAAAGTATTAAAGACAAGTATAATGAAGAAAAATTCAGAGGCTTCTGGTAAGAAAGGGAAGGTATCAAAGACGGAAGGTGAAAGAGGAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTTCAGGGACTAATGTATTCTGTCGTGGTAGTAACATTGTTGTCAAAAGAGGGGGTTTATTTTCTGATGGCATAGTTTGTGATTGTTGTCGTGTTAAATTCAATATCACTGGATTTGAGGCTCATGCTGGTTGTACAAGACATAGACCATCCACTAGTATCTTGTTGGGAGATGGAAGGTCGTTGTTGGACTGTCAAAGGAAGCTCTTAGTTCACGTCTCGATCGAGTTCCGGATGGAGATTGGTTCTGTCCAACATGTTGTTGCAAAATATGCTATCGACCCACATGCAAGCAAGAATGTAGATGGCAATGACAGCAATATTCTTGTTTGTGTTCAATGTGCGCAAAAGTTTCATTTTGGGTGTGTAAAGGCGTTAGGACTTGGATCAAGTCACATTGAGAGCAGTGGTGAAAAGAAGAATTGGTTTTGCAGTGTAGTTTGTGGTAACATGTTCTTATGTCTAAAGAAGCTGTTAGGGAAACCAATAACAGTTGCAGCTAATCTAACTTGGACATTATTGAAGAATGTGAGTAATGATGATCAATTTAGTCAAAAGAAGAGAAAGTTGAATGTGGCTCTTGATGTATTGTATGAGAGTTTTAACCCAACTATTGATGCTTTATCTGGAAGAGAAGTGATTAAAGATGTTGTTTTTAGTAGAGGCTCAGAACATCAACGCTTGAACTTTCATGGTTTCTATAATGTGATTTTAGAGAAAATGGGTAAAGTCATTTCGGTTGCAACTATAAGAATTTATGGTCAAAAGGTTGCCGAGATAGTTTTCGTGGCTACCAAGGAACAATATCGAAGACAAGGAATGTGTCGTTTGTTGATGCATGAGCTTGAGAAACAGTTGACACGCTTAGGAGTTGAAAGCTTGGTTTTGCATTCCTCTGAGGATGCTATAGACACATGGACAAAAGCGTTTGGTTTTGCTAGGATAACCAGAGAAGACAAGTGTCAATTTGTTGATAAAACTTTCTTAGAATTTCAGAACACTATCATGTGCCTTAAATCCCTGAATAGACCTACATGGCCTTGTATTGCTTGA

Protein sequence

>MsaT016979.1

MDSRSLPPDINIKPEHCPEAVREWYRLTGLQDRKESAGRKNLALKAKQHLLSLGWKFCLRRVALKKEVFPNALQLQQQRQFLRLTTVEKEIERTEETERITISLSPLQSKKRPRESEETAAISIYSSPYNRKSYRGNPRSSSDINLLVSIAVERETERIQGGSSSNYNFFVSTKRPSESEEAAAISISSESDESTSDGSEASSASSESTSDEDSETSSSGDVNKAIVGSDKRGKVLKTSLMEKNSEDCGRRGKVLKTSIMKKNSEASGKKGKVSKTEGERGRYSLVSWLIKNQVLVSGTNVFCRGSNIVVKRGGLFSDGIVCDCCRVKFNITGFEAHAGCTRHRPSTSILLGDGRSLLDCQRKLLVHVSIEFRMEIGSVQHVVAKYAIDPHASKNVDGNDSNILVCVQCAQKFHFGCVKALGLGSSHIESSGEKKNWFCSVVCGNMFLCLKKLLGKPITVAANLTWTLLKNVSNDDQFSQKKRKLNVALDVLYESFNPTIDALSGREVIKDVVFSRGSEHQRLNFHGFYNVILEKMGKVISVATIRIYGQKVAEIVFVATKEQYRRQGMCRLLMHELEKQLTRLGVESLVLHSSEDAIDTWTKAFGFARITREDKCQFVDKTFLEFQNTIMCLKSLNRPTWPCIA*