AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG016982


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016982 MtrunA17_Chr3g0134811 92.125 800 58 2 1 795 1 800 0.0 1471
MsaG016982 MtrunA17_Chr7g0270101 63.775 853 194 12 1 795 1 796 0.0 1011
MsaG016982 MtrunA17_Chr3g0134821 60.563 710 166 6 97 795 235 841 0.0 773
MsaG016982 MtrunA17_Chr3g0134821 69.912 226 60 3 1 218 1 226 5.62e-83 282
MsaG016982 MtrunA17_Chr5g0407211 70.905 464 91 5 338 795 3 428 0.0 675
MsaG016982 MtrunA17_Chr5g0407251 70.870 460 98 5 338 795 3 428 0.0 668
MsaG016982 MtrunA17_Chr3g0134851 43.546 643 173 10 155 788 5 466 4.19e-139 419
MsaG016982 MtrunA17_Chr5g0430361 31.414 799 414 22 15 788 370 1059 8.19e-108 354
MsaG016982 MtrunA17_Chr3g0105291 38.925 465 211 9 337 786 602 1008 9.78e-101 336
MsaG016982 MtrunA17_Chr2g0316251 33.621 464 242 7 334 786 758 1166 1.77e-75 267
MsaG016982 MtrunA17_Chr1g0205451 32.543 464 249 7 334 786 602 1012 3.99e-66 240
MsaG016982 MtrunA17_Chr1g0185491 34.615 312 188 3 488 788 916 1222 5.07e-55 206
MsaG016982 MtrunA17_Chr7g0259981 31.090 312 192 5 483 792 8 298 2.27e-45 165
MsaG016982 MtrunA17_Chr1g0182481 25.978 358 206 9 483 790 548 896 3.81e-36 147
MsaG016982 MtrunA17_Chr1g0179841 25.664 452 268 18 372 788 386 804 5.26e-25 111
MsaG016982 MtrunA17_Chr4g0028111 24.928 345 189 7 480 758 219 559 9.37e-25 110
MsaG016982 MtrunA17_Chr7g0265211 27.547 265 156 7 553 793 698 950 1.62e-22 103
MsaG016982 MtrunA17_Chr2g0320451 30.220 182 118 4 614 792 852 1027 5.59e-20 95.5
MsaG016982 MtrunA17_Chr2g0320451 25.767 163 74 3 486 604 555 714 4.86e-12 70.1
MsaG016982 MtrunA17_Chr4g0055731 23.871 310 176 8 488 786 209 469 5.85e-19 90.9
MsaG016982 MtrunA17_Chr4g0025251 25.969 258 162 6 557 790 453 705 2.03e-18 90.1
MsaG016982 MtrunA17_Chr3g0139561 32.961 179 99 7 586 757 191 355 7.38e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG016982 AT5G58610.4 36.327 490 246 8 309 786 342 777 1.38e-91 306
MsaG016982 AT5G58610.8 36.327 490 246 8 309 786 573 1008 7.36e-90 305
MsaG016982 AT5G58610.2 36.327 490 246 8 309 786 573 1008 7.36e-90 305
MsaG016982 AT5G58610.3 36.327 490 246 8 309 786 573 1008 9.14e-90 306
MsaG016982 AT5G58610.5 36.327 490 246 8 309 786 564 999 1.93e-89 305
MsaG016982 AT5G58610.7 36.327 490 246 8 309 786 564 999 2.14e-89 305
MsaG016982 AT5G58610.6 34.639 485 235 7 309 786 564 973 2.06e-80 279
MsaG016982 AT5G58610.1 34.639 485 235 7 309 786 564 973 2.47e-80 279
MsaG016982 AT5G58610.9 28.249 708 368 17 42 734 365 947 1.13e-75 265
MsaG016982 AT5G58610.10 35.388 438 217 8 309 734 573 956 1.40e-74 261
MsaG016982 AT5G36740.5 30.753 465 254 10 334 786 541 949 9.69e-66 238
MsaG016982 AT5G36740.1 30.753 465 254 10 334 786 541 949 9.69e-66 238
MsaG016982 AT3G14980.5 30.297 472 257 7 334 792 572 984 1.54e-63 231
MsaG016982 AT3G14980.6 30.297 472 257 7 334 792 617 1029 2.24e-63 231
MsaG016982 AT3G14980.1 30.297 472 257 7 334 792 617 1029 2.24e-63 231
MsaG016982 AT3G14980.2 30.297 472 257 7 334 792 617 1029 2.24e-63 231
MsaG016982 AT3G14980.3 30.297 472 257 7 334 792 617 1029 6.21e-63 229
MsaG016982 AT1G05380.3 31.034 464 255 7 334 786 516 925 1.15e-62 229
MsaG016982 AT1G05380.1 31.034 464 255 7 334 786 516 925 1.15e-62 229
MsaG016982 AT1G05380.2 31.034 464 255 7 334 786 516 925 1.15e-62 229
MsaG016982 AT5G36740.4 30.169 474 255 11 334 786 388 806 1.68e-62 228
MsaG016982 AT5G58610.11 26.637 672 349 17 42 696 365 909 1.89e-60 221
MsaG016982 AT5G63900.1 37.621 311 172 9 482 788 250 542 1.16e-57 207
MsaG016982 AT5G36670.4 28.690 481 257 12 334 786 541 963 5.40e-57 212
MsaG016982 AT5G36670.5 28.690 481 257 12 334 786 541 963 5.40e-57 212
MsaG016982 AT4G14920.3 28.657 499 282 10 302 789 551 986 2.57e-56 210
MsaG016982 AT4G14920.2 28.657 499 282 10 302 789 551 986 3.02e-56 210
MsaG016982 AT4G14920.1 28.657 499 282 10 302 789 551 986 3.02e-56 210
MsaG016982 AT5G36670.2 29.975 407 217 10 334 728 541 891 2.81e-54 202
MsaG016982 AT5G36740.2 29.975 407 217 10 334 728 541 891 2.81e-54 202
MsaG016982 AT5G36740.3 29.975 407 217 10 334 728 541 891 2.81e-54 202
MsaG016982 AT5G36670.3 28.163 490 258 13 334 786 388 820 1.31e-53 201
MsaG016982 AT5G36670.1 28.163 490 258 13 334 786 541 973 1.45e-53 202
MsaG016982 AT3G14980.4 28.647 377 197 7 334 697 617 934 9.87e-41 161
MsaG016982 AT2G37520.1 25.049 511 241 16 339 790 392 819 3.39e-36 147
MsaG016982 AT3G53680.1 28.191 376 204 12 442 761 440 805 4.50e-36 147
MsaG016982 AT3G53680.2 28.191 376 204 12 442 761 442 807 4.86e-36 147
MsaG016982 AT2G36720.1 27.851 377 196 11 479 787 606 974 2.24e-33 139
MsaG016982 AT2G36720.2 27.851 377 196 11 479 787 606 974 2.24e-33 139
MsaG016982 AT2G27980.1 26.790 377 193 11 488 790 694 1061 2.25e-29 126

Find 159 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAACATCTTCTTTCTT+TGG 0.186886 3:+104471617 MsaT016982.1:CDS
TGTGCGCAAAAGTTTCATTT+TGG 0.198708 3:+104473154 MsaT016982.1:CDS
GTTGCAACTATAAGAATTTA+TGG 0.208645 3:+104473553 MsaT016982.1:CDS
TTTCTTTGGGTTGGAAGTTT+TGG 0.214565 3:+104471631 MsaT016982.1:CDS
AGATTAGCTGCAACTGTTAT+TGG 0.219778 3:-104473298 None:intergenic
TACCATTCTCTTACAGCTTC+TGG 0.232489 3:-104471531 None:intergenic
TTGATGTCGCTGCTGCTTCC+TGG 0.237739 3:-104471977 None:intergenic
TACACATTCTTGCTTGCATT+TGG 0.242887 3:-104473095 None:intergenic
CCAACTATTGATGCTTTATC+TGG 0.251503 3:+104473421 MsaT016982.1:CDS
CATAAACGCTTGAACTTTCA+TGG 0.256618 3:+104473487 MsaT016982.1:CDS
AAGTGCTGGTAGAAAGAATT+TGG 0.277416 3:+104471584 MsaT016982.1:CDS
GTTTGTTCTATTTGTGATTT+GGG 0.285604 3:+104472950 MsaT016982.1:CDS
GCATTCCACCTCAGTTGTTT+AGG 0.289821 3:+104473007 MsaT016982.1:CDS
TGCTGCAGTTGAAGGGCGTT+CGG 0.292408 3:-104471769 None:intergenic
AAACAACATCTTCTTTCTTT+GGG 0.299298 3:+104471618 MsaT016982.1:CDS
AGAGAATGGTACCGCTTAAC+AGG 0.307427 3:+104471543 MsaT016982.1:CDS
AACAGTATCGTTATTTGCTT+TGG 0.308260 3:-104472930 None:intergenic
TGTTTGTTCTATTTGTGATT+TGG 0.310842 3:+104472949 MsaT016982.1:CDS
TTATGTCTAAAGAAGCTGTT+AGG 0.318220 3:+104473271 MsaT016982.1:CDS
GAAGGTATTCACTTGTTTCT+TGG 0.322354 3:+104472480 MsaT016982.1:CDS
GTTGATAAAGAATCAAGTTT+TGG 0.324712 3:+104472502 MsaT016982.1:CDS
GCTGCAGTTGAAGGGCGTTC+GGG 0.336474 3:-104471768 None:intergenic
ACACATTCTTGCTTGCATTT+GGG 0.347129 3:-104473094 None:intergenic
CATGGCCTTGTATTGCTTGA+TGG 0.358298 3:+104473848 MsaT016982.1:CDS
TTTAGGTCTCGATCGAGTTC+CGG 0.360500 3:+104473024 MsaT016982.1:CDS
AAGGCCATGTAGGTCTATTC+AGG 0.369107 3:-104473834 None:intergenic
TCCCCGCATCAGAATTTACT+TGG 0.372705 3:-104472805 None:intergenic
GAAAATGGGTAAAGTCATTT+CGG 0.376245 3:+104473531 MsaT016982.1:CDS
CCAGATAAAGCATCAATAGT+TGG 0.388520 3:-104473421 None:intergenic
AAATTGACACTTGTCTTCTC+TGG 0.394375 3:-104473761 None:intergenic
AGTTGCTGCTGCTTCCTCCT+TGG 0.398593 3:-104472042 None:intergenic
AACATCTTCTTTCTTTGGGT+TGG 0.401046 3:+104471622 MsaT016982.1:CDS
CGTGTTAAATTCAATATCAC+TGG 0.404641 3:+104472614 MsaT016982.1:CDS
ATCGAGTTCCGGATGGAGAT+TGG 0.415728 3:+104473035 MsaT016982.1:CDS
TAGGTCTATTCAGGGATTTA+AGG 0.416516 3:-104473825 None:intergenic
CCCTACTTCAGAATTTCCTT+CGG 0.418606 3:-104472894 None:intergenic
ATTCAATATCACTGGATTTG+AGG 0.420799 3:+104472622 MsaT016982.1:CDS
GGTTTCTCTTTCGACGGCAA+TGG 0.423351 3:-104472011 None:intergenic
GCAGTGGTGAAAAGAAGAAT+TGG 0.424434 3:+104473218 MsaT016982.1:CDS
AGTAACATTGTTGTCAAAAG+AGG 0.427286 3:+104472554 MsaT016982.1:CDS
TAAATTTGAATCAGAAGTTA+CGG 0.429569 3:+104472289 MsaT016982.1:CDS
GATTCTGAAACCTCTAGTTC+CGG 0.430859 3:+104472203 MsaT016982.1:CDS
TGTTGTTCTTTCTGTTTCCT+CGG 0.431751 3:-104471844 None:intergenic
ATTCTGAAACCTCTAGTTCC+GGG 0.432792 3:+104472204 MsaT016982.1:CDS
TTTGGGTGTGTAAAGGCGTT+AGG 0.435106 3:+104473172 MsaT016982.1:CDS
CAGCAGCGACATCAATCTAT+TGG 0.437179 3:+104471985 MsaT016982.1:CDS
TATAAGAATTTATGGTCAAA+AGG 0.441015 3:+104473561 MsaT016982.1:CDS
ACCATCCACTAGTATCTTGT+TGG 0.443708 3:+104472670 MsaT016982.1:CDS
CAGATAAAGCATCAATAGTT+GGG 0.446006 3:-104473420 None:intergenic
GCTTCCTCCTTGGATTCTCT+CGG 0.449759 3:-104472032 None:intergenic
TCAGAGGCTTCTGGTAAGAA+AGG 0.450319 3:+104472428 MsaT016982.1:CDS
TCAGAGGATTGTGGTAGAAG+AGG 0.451281 3:+104472371 MsaT016982.1:CDS
GATTCACTCGGTCGCTTTGA+CGG 0.451425 3:-104472080 None:intergenic
GTACAAGTAAATTCTGAAGC+AGG 0.454210 3:+104472857 MsaT016982.1:CDS
TGTGTAAAGGCGTTAGGACT+TGG 0.455855 3:+104473178 MsaT016982.1:CDS
TGCAAGCAAGAATGTGTAGA+TGG 0.456542 3:+104473100 MsaT016982.1:CDS
GACACATGGACAAAAGCGTT+TGG 0.456899 3:+104473724 MsaT016982.1:CDS
CAGAGGATTGTGGTAGAAGA+GGG 0.460042 3:+104472372 MsaT016982.1:CDS
ACAGCTTCTGGACAATGCTC+AGG 0.460946 3:-104471519 None:intergenic
TGAATCAGAAGTTACGGATT+CGG 0.462982 3:+104472295 MsaT016982.1:CDS
TGATGTCGCTGCTGCTTCCT+GGG 0.467486 3:-104471976 None:intergenic
CAGTTGCAGCTAATCTAACT+TGG 0.467585 3:+104473305 MsaT016982.1:CDS
GTTATACTTCTCCTAACAAT+GGG 0.474735 3:+104471685 MsaT016982.1:CDS
GAGAAACAGTTGACACGCTT+AGG 0.478300 3:+104473661 MsaT016982.1:CDS
TTCTTCAATGCAACTCTCGC+AGG 0.478869 3:-104471733 None:intergenic
TTGTACTTCAGAATTTCCTT+CGG 0.479465 3:-104472840 None:intergenic
TGATATTGCTGCTGCTTCCT+CGG 0.487335 3:-104472102 None:intergenic
ATCAGAAGTTGATTCAGAAC+TGG 0.492607 3:-104472177 None:intergenic
GACGTTGTTGCTGCAGTTGA+AGG 0.492904 3:-104471777 None:intergenic
AGAGCTACCGAGGGAATCCC+AGG 0.493555 3:+104471959 MsaT016982.1:CDS
AGGTACGGTATCAACATCAA+TGG 0.493799 3:+104472247 MsaT016982.1:CDS
ACTAGTATCTTGTTGGGAGA+TGG 0.496603 3:+104472677 MsaT016982.1:CDS
GCTGAAGCAAATTCTGAAGC+AGG 0.497345 3:+104472767 MsaT016982.1:CDS
GGTCGTTGTTGGACTGTCAA+AGG 0.500201 3:+104472702 MsaT016982.1:CDS
GCCCAAGTAAATTCTGATGC+GGG 0.501121 3:+104472803 MsaT016982.1:CDS
TTGTCTTCGATATTGTTCCT+TGG 0.503462 3:-104473608 None:intergenic
CAATTTCTTCGTCTCCACTA+CGG 0.504197 3:+104471799 MsaT016982.1:CDS
GCTGTTTCCTCAGATTCTCT+CGG 0.506010 3:-104471900 None:intergenic
CCATCCACTAGTATCTTGTT+GGG 0.506128 3:+104472671 MsaT016982.1:CDS
ACCATCAGAAGTTGATTCAT+CGG 0.513368 3:-104472138 None:intergenic
CTGCAGTTGAAGGGCGTTCG+GGG 0.514386 3:-104471767 None:intergenic
ACTGGATTTGAGGCTCATGC+TGG 0.514944 3:+104472632 MsaT016982.1:CDS
AGGCCATGTAGGTCTATTCA+GGG 0.515704 3:-104473833 None:intergenic
CGTTATACTTCTCCTAACAA+TGG 0.516763 3:+104471684 MsaT016982.1:CDS
CAGAGGCTTCTGGTAAGAAA+GGG 0.518719 3:+104472429 MsaT016982.1:CDS
GGGAGATGGAAGGTCGTTGT+TGG 0.519941 3:+104472691 MsaT016982.1:CDS
AGAGAAACCGAGAGAATCCA+AGG 0.534686 3:+104472025 MsaT016982.1:CDS
TATGTCTAAAGAAGCTGTTA+GGG 0.535737 3:+104473272 MsaT016982.1:CDS
GCCGAAGGAAATTCTGAAGT+AGG 0.536925 3:+104472893 MsaT016982.1:CDS
TGCGAGAGTTGCATTGAAGA+AGG 0.537811 3:+104471735 MsaT016982.1:CDS
GGTAGCTCTTTCGATTGTAA+AGG 0.538641 3:-104471945 None:intergenic
GTCCAGAAGCTGTAAGAGAA+TGG 0.545236 3:+104471529 MsaT016982.1:CDS
GTCGTTGTTGGACTGTCAAA+GGG 0.545406 3:+104472703 MsaT016982.1:CDS
GTAACATTGTTGTCAAAAGA+GGG 0.548060 3:+104472555 MsaT016982.1:CDS
AACATTGTTGTCAAAAGAGG+GGG 0.548399 3:+104472557 MsaT016982.1:CDS
TCCGATGAATCAACTTCTGA+TGG 0.549352 3:+104472137 MsaT016982.1:CDS
CCCCGCATCAGAATTTACTT+GGG 0.549902 3:-104472804 None:intergenic
GAGAAGAATTCAGAGGATTG+TGG 0.552564 3:+104472362 MsaT016982.1:CDS
ACGCTTAGGAGTTGAAAGCT+TGG 0.553379 3:+104473675 MsaT016982.1:CDS
TGATTCAGAACTGGCACTAG+AGG 0.557607 3:-104472168 None:intergenic
TCTCTCGGTTTCTCTTTCGA+CGG 0.559043 3:-104472017 None:intergenic
CAAGCAATACAAGGCCATGT+AGG 0.560703 3:-104473844 None:intergenic
GCTGCTTCCTGGGATTCCCT+CGG 0.560736 3:-104471966 None:intergenic
GCTGCTTCCTCGGATTCACT+CGG 0.560843 3:-104472092 None:intergenic
TTCTGAATCAACTTCTGATG+AGG 0.561379 3:+104472181 MsaT016982.1:CDS
AACTACCATCAAGCAATACA+AGG 0.564139 3:-104473853 None:intergenic
TGCAGTTGAAGGGCGTTCGG+GGG 0.566749 3:-104471766 None:intergenic
CCGAAGGAAATTCTGAAGTA+GGG 0.567971 3:+104472894 MsaT016982.1:CDS
CAAGATCGTAAAGAAAGTGC+TGG 0.568933 3:+104471570 MsaT016982.1:CDS
GATGTTAATAAAGCTATAGT+AGG 0.569536 3:+104472227 MsaT016982.1:CDS
GGTAGCCACGAAAACTATCT+CGG 0.575564 3:-104473587 None:intergenic
GGACAGAACCAATCTCCATC+CGG 0.578561 3:-104473043 None:intergenic
TACAAGTAAATTCTGAAGCA+GGG 0.580351 3:+104472858 MsaT016982.1:CDS
ATTAACATCCCCGGAACTAG+AGG 0.586617 3:-104472213 None:intergenic
TAATAAAGCTATAGTAGGTA+CGG 0.586828 3:+104472232 MsaT016982.1:CDS
AGGTAGTGATAAAAGAGGAA+AGG 0.591418 3:+104472319 MsaT016982.1:CDS
ACGTTGTTGCTGCAGTTGAA+GGG 0.592488 3:-104471776 None:intergenic
TCAAAGACGGAAGGTGAAAG+AGG 0.593891 3:+104472458 MsaT016982.1:CDS
AAAGAGACCGAGAGAATCTG+AGG 0.594374 3:+104471893 MsaT016982.1:CDS
TTTAATGGAGAAGAATTCAG+AGG 0.596793 3:+104472355 MsaT016982.1:CDS
TGTTCTATTTGTGATTTGGG+AGG 0.600755 3:+104472953 MsaT016982.1:CDS
CTGAAGCAAATTCTGAAGCA+GGG 0.601311 3:+104472768 MsaT016982.1:CDS
AATCCCTGAATAGACCTACA+TGG 0.602735 3:+104473830 MsaT016982.1:CDS
TATAGCTTTATTAACATCCC+CGG 0.602739 3:-104472222 None:intergenic
ATCTCCCAACAAGATACTAG+TGG 0.609147 3:-104472675 None:intergenic
GAAAGGGAAGGTATCAAAGA+CGG 0.611839 3:+104472445 MsaT016982.1:CDS
AAAGAGATTGAGAGAATCCG+AGG 0.612293 3:+104471827 MsaT016982.1:CDS
GATCTTGTAGCCCTGTTAAG+CGG 0.613318 3:-104471554 None:intergenic
AGACGGAAGGTGAAAGAGGA+AGG 0.613430 3:+104472462 MsaT016982.1:CDS
CCCAACAAGATACTAGTGGA+TGG 0.615712 3:-104472671 None:intergenic
CTGAGGATGCTATAGACACA+TGG 0.615930 3:+104473710 MsaT016982.1:CDS
TACAATCGAAAGAGCTACCG+AGG 0.616630 3:+104471949 MsaT016982.1:CDS
TTAGTTCACGTGATGAAAAG+CGG 0.620948 3:+104472732 MsaT016982.1:CDS
GGTCTCGATCGAGTTCCGGA+TGG 0.624514 3:+104473028 MsaT016982.1:CDS
GGGACTAATGTATTCTGTCG+TGG 0.624640 3:+104472530 MsaT016982.1:CDS
AAAGAAGAGAAAGTTGAATG+TGG 0.626130 3:+104473369 MsaT016982.1:CDS
TCGGTAGGTAGTGATAAAAG+AGG 0.626684 3:+104472314 MsaT016982.1:CDS
TGCCCAAGTAAATTCTGATG+CGG 0.627054 3:+104472802 MsaT016982.1:CDS
CAACTGAGGTGGAATGCAGA+AGG 0.629465 3:-104473001 None:intergenic
GGGAATCATTATGTTGCCGA+AGG 0.631115 3:+104472824 MsaT016982.1:CDS
CCCAAGTAAATTCTGATGCG+GGG 0.634131 3:+104472804 MsaT016982.1:CDS
TCAGAAGTTACGGATTCGGT+AGG 0.634475 3:+104472299 MsaT016982.1:CDS
GGGAATCATTCTGTTGCCGA+AGG 0.634763 3:+104472878 MsaT016982.1:CDS
TAACATTGTTGTCAAAAGAG+GGG 0.635378 3:+104472556 MsaT016982.1:CDS
GAGAGTTGCATTGAAGAAGG+AGG 0.635933 3:+104471738 MsaT016982.1:CDS
AGAGTTGCATTGAAGAAGGA+GGG 0.637310 3:+104471739 MsaT016982.1:CDS
GGCTTCTGGTAAGAAAGGGA+AGG 0.643581 3:+104472433 MsaT016982.1:CDS
TCAAGTCACATTGAGAGCAG+TGG 0.644287 3:+104473202 MsaT016982.1:CDS
CGAGACCTAAACAACTGAGG+TGG 0.644826 3:-104473012 None:intergenic
TTCTGAAACCTCTAGTTCCG+GGG 0.647653 3:+104472205 MsaT016982.1:CDS
GTATCTTGTTGGGAGATGGA+AGG 0.650656 3:+104472681 MsaT016982.1:CDS
AAGGAACAATATCGAAGACA+AGG 0.663403 3:+104473610 MsaT016982.1:CDS
GAGAATGGTACCGCTTAACA+GGG 0.663915 3:+104471544 MsaT016982.1:CDS
AAAGCGACCGAGTGAATCCG+AGG 0.665045 3:+104472085 MsaT016982.1:CDS
GGGAAGGTATCAAAGACGGA+AGG 0.682930 3:+104472449 MsaT016982.1:CDS
ACAATCGAAAGAGCTACCGA+GGG 0.709602 3:+104471950 MsaT016982.1:CDS
TGTGTCTATAGCATCCTCAG+AGG 0.722624 3:-104473707 None:intergenic
GAAACCGAGAGAATCCAAGG+AGG 0.723363 3:+104472028 MsaT016982.1:CDS
GATCGAGACCTAAACAACTG+AGG 0.725123 3:-104473015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 104471480 104473867 104471480 ID=MsaG016982
Chr3 mRNA 104471480 104473867 104471480 ID=MsaT016982.1;Parent=MsaG016982
Chr3 exon 104471480 104473867 104471480 ID=MsaT016982.1.exon1;Parent=MsaT016982.1
Chr3 CDS 104471480 104473867 104471480 ID=cds.MsaT016982.1;Parent=MsaT016982.1
Gene Sequence

>MsaT016982.1

ATGGATTCTCGTTCACTACCTCCTGATATCAACATAAAACCTGAGCATTGTCCAGAAGCTGTAAGAGAATGGTACCGCTTAACAGGGCTACAAGATCGTAAAGAAAGTGCTGGTAGAAAGAATTTGGCTTTGAAAGCAAAACAACATCTTCTTTCTTTGGGTTGGAAGTTTTGGTACATTGACAAAAATACTAAGTGGGAATTGCGTTATACTTCTCCTAACAATGGGAAAAACCATATTACTCTTAGAAAAGCCTGCGAGAGTTGCATTGAAGAAGGAGGGTGTTCCCCCGAACGCCCTTCAACTGCAGCAACAACGTCAATTTCTTCGTCTCCACTACGGTTGAAAAAGAGATTGAGAGAATCCGAGGAAACAGAAAGAACAACAATTTCTTTGTCTCCATTGCAGTCGAAAAAGAGACCGAGAGAATCTGAGGAAACAGCAGCAATATCAATTTATTCGTCTCCTTTACAATCGAAAGAGCTACCGAGGGAATCCCAGGAAGCAGCAGCGACATCAATCTATTGGTCTCCATTGCCGTCGAAAGAGAAACCGAGAGAATCCAAGGAGGAAGCAGCAGCAACTACAATTTCTTTGTCTCCGTCAAAGCGACCGAGTGAATCCGAGGAAGCAGCAGCAATATCAATCTCTTCTGAATCCGATGAATCAACTTCTGATGGTTCTGAAGCCTCTAGTGCCAGTTCTGAATCAACTTCTGATGAGGATTCTGAAACCTCTAGTTCCGGGGATGTTAATAAAGCTATAGTAGGTACGGTATCAACATCAATGGAAAATGAGAAGCATGTGAGTAAATTTGAATCAGAAGTTACGGATTCGGTAGGTAGTGATAAAAGAGGAAAGGTTTTAAAAACGAGTTTAATGGAGAAGAATTCAGAGGATTGTGGTAGAAGAGGGAAAGTATTAAAGACAAGTATAATGAAGAAAAATTCAGAGGCTTCTGGTAAGAAAGGGAAGGTATCAAAGACGGAAGGTGAAAGAGGAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTTCAGGGACTAATGTATTCTGTCGTGGTAGTAACATTGTTGTCAAAAGAGGGGGTTTATTTTCTGATGGCATAGTTTGTGATTGTTGTCGTGTTAAATTCAATATCACTGGATTTGAGGCTCATGCTGGTTGTACAAGACATAGACCATCCACTAGTATCTTGTTGGGAGATGGAAGGTCGTTGTTGGACTGTCAAAGGGAAGCTCTTAGTTCACGTGATGAAAAGCGGAATCATTGTATTGCTGAAGCAAATTCTGAAGCAGGGAATCATTGTGTTGCCCAAGTAAATTCTGATGCGGGGAATCATTATGTTGCCGAAGGAAATTCTGAAGTACAAGTAAATTCTGAAGCAGGGAATCATTCTGTTGCCGAAGGAAATTCTGAAGTAGGGAATCACTGTGTTGCCAAAGCAAATAACGATACTGTTTGTTCTATTTGTGATTTGGGAGGTGACATAGTACTGTGTGATCAATGTCCTTCTGCATTCCACCTCAGTTGTTTAGGTCTCGATCGAGTTCCGGATGGAGATTGGTTCTGTCCAACATGTTGTTGCAAAATATGCTATCGACCCAAATGCAAGCAAGAATGTGTAGATGGCAATGACAGCAATATTCTTGTTTGTGTTCAATGTGCGCAAAAGTTTCATTTTGGGTGTGTAAAGGCGTTAGGACTTGGATCAAGTCACATTGAGAGCAGTGGTGAAAAGAAGAATTGGTTTTGCAGTGTAGTTTGTGGTAACATGTTCTTATGTCTAAAGAAGCTGTTAGGGAAACCAATAACAGTTGCAGCTAATCTAACTTGGACATTATTGAAGAATGTGAGTAATGATGATCAATTTAGTCAAAAGAAGAGAAAGTTGAATGTGGCTCTTGATGTATTGTATGAGAGTTTTAACCCAACTATTGATGCTTTATCTGGAAGAGAATTGATTAAAGATGTTGTTTTTAGTAGAGGCTCAGAACATAAACGCTTGAACTTTCATGGTTTCTATAATGTGATTTTAGAGAAAATGGGTAAAGTCATTTCGGTTGCAACTATAAGAATTTATGGTCAAAAGGTTGCCGAGATAGTTTTCGTGGCTACCAAGGAACAATATCGAAGACAAGGAATGTGTCGTTTGTTGATGCATGAGCTTGAGAAACAGTTGACACGCTTAGGAGTTGAAAGCTTGGTTTTGCATTCCTCTGAGGATGCTATAGACACATGGACAAAAGCGTTTGGTTTTGCTAGGATAACCAGAGAAGACAAGTGTCAATTTGTTGATAAAACTTTCTTAGAATTTCAGAACACTATCATGTGCCTTAAATCCCTGAATAGACCTACATGGCCTTGTATTGCTTGA

Protein sequence

>MsaT016982.1

MDSRSLPPDINIKPEHCPEAVREWYRLTGLQDRKESAGRKNLALKAKQHLLSLGWKFWYIDKNTKWELRYTSPNNGKNHITLRKACESCIEEGGCSPERPSTAATTSISSSPLRLKKRLRESEETERTTISLSPLQSKKRPRESEETAAISIYSSPLQSKELPRESQEAAATSIYWSPLPSKEKPRESKEEAAATTISLSPSKRPSESEEAAAISISSESDESTSDGSEASSASSESTSDEDSETSSSGDVNKAIVGTVSTSMENEKHVSKFESEVTDSVGSDKRGKVLKTSLMEKNSEDCGRRGKVLKTSIMKKNSEASGKKGKVSKTEGERGRYSLVSWLIKNQVLVSGTNVFCRGSNIVVKRGGLFSDGIVCDCCRVKFNITGFEAHAGCTRHRPSTSILLGDGRSLLDCQREALSSRDEKRNHCIAEANSEAGNHCVAQVNSDAGNHYVAEGNSEVQVNSEAGNHSVAEGNSEVGNHCVAKANNDTVCSICDLGGDIVLCDQCPSAFHLSCLGLDRVPDGDWFCPTCCCKICYRPKCKQECVDGNDSNILVCVQCAQKFHFGCVKALGLGSSHIESSGEKKNWFCSVVCGNMFLCLKKLLGKPITVAANLTWTLLKNVSNDDQFSQKKRKLNVALDVLYESFNPTIDALSGRELIKDVVFSRGSEHKRLNFHGFYNVILEKMGKVISVATIRIYGQKVAEIVFVATKEQYRRQGMCRLLMHELEKQLTRLGVESLVLHSSEDAIDTWTKAFGFARITREDKCQFVDKTFLEFQNTIMCLKSLNRPTWPCIA*