Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016985 | XP_013461784.1 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016985 | sp|F4IXE7|IDM1_ARATH | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.95e-63 | 231 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016985 | tr|A0A072V1D9|A0A072V1D9_MEDTR | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
Gene ID | Type | Classification |
---|---|---|
MsaG016985 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016985 | MtrunA17_Chr3g0134811 | 63.164 | 809 | 138 | 8 | 1 | 658 | 1 | 800 | 0.0 | 947 |
MsaG016985 | MtrunA17_Chr7g0270101 | 71.160 | 638 | 138 | 3 | 44 | 658 | 182 | 796 | 0.0 | 873 |
MsaG016985 | MtrunA17_Chr7g0270101 | 66.250 | 80 | 24 | 1 | 22 | 101 | 74 | 150 | 5.59e-19 | 91.7 |
MsaG016985 | MtrunA17_Chr3g0134821 | 65.954 | 608 | 134 | 3 | 51 | 658 | 307 | 841 | 0.0 | 761 |
MsaG016985 | MtrunA17_Chr3g0134821 | 34.783 | 253 | 94 | 7 | 1 | 190 | 1 | 245 | 5.62e-21 | 98.2 |
MsaG016985 | MtrunA17_Chr5g0407211 | 72.955 | 440 | 101 | 5 | 223 | 658 | 3 | 428 | 0.0 | 665 |
MsaG016985 | MtrunA17_Chr5g0407251 | 72.500 | 440 | 103 | 5 | 223 | 658 | 3 | 428 | 0.0 | 659 |
MsaG016985 | MtrunA17_Chr3g0134851 | 47.360 | 606 | 166 | 10 | 57 | 651 | 3 | 466 | 6.89e-147 | 434 |
MsaG016985 | MtrunA17_Chr5g0430361 | 40.826 | 436 | 225 | 8 | 222 | 651 | 651 | 1059 | 6.94e-106 | 345 |
MsaG016985 | MtrunA17_Chr3g0105291 | 41.149 | 435 | 221 | 9 | 222 | 649 | 602 | 1008 | 1.67e-104 | 342 |
MsaG016985 | MtrunA17_Chr2g0316251 | 35.412 | 449 | 257 | 9 | 206 | 649 | 746 | 1166 | 2.54e-79 | 275 |
MsaG016985 | MtrunA17_Chr1g0205451 | 32.715 | 431 | 268 | 4 | 220 | 649 | 603 | 1012 | 1.55e-67 | 241 |
MsaG016985 | MtrunA17_Chr1g0185491 | 32.045 | 440 | 265 | 8 | 220 | 651 | 809 | 1222 | 2.53e-65 | 234 |
MsaG016985 | MtrunA17_Chr7g0259981 | 31.562 | 320 | 188 | 6 | 338 | 655 | 8 | 298 | 5.88e-46 | 165 |
MsaG016985 | MtrunA17_Chr1g0182481 | 26.013 | 469 | 250 | 15 | 224 | 649 | 478 | 892 | 6.03e-43 | 166 |
MsaG016985 | MtrunA17_Chr7g0265211 | 25.263 | 475 | 237 | 14 | 249 | 656 | 527 | 950 | 7.14e-38 | 150 |
MsaG016985 | MtrunA17_Chr1g0179841 | 24.837 | 459 | 241 | 12 | 257 | 651 | 386 | 804 | 1.29e-30 | 128 |
MsaG016985 | MtrunA17_Chr4g0028111 | 26.265 | 415 | 197 | 12 | 272 | 621 | 189 | 559 | 4.62e-27 | 116 |
MsaG016985 | MtrunA17_Chr4g0055731 | 22.973 | 444 | 246 | 15 | 220 | 649 | 108 | 469 | 5.99e-23 | 102 |
MsaG016985 | MtrunA17_Chr2g0320451 | 29.630 | 189 | 112 | 6 | 469 | 653 | 852 | 1023 | 1.92e-18 | 90.1 |
MsaG016985 | MtrunA17_Chr4g0025251 | 26.692 | 266 | 156 | 8 | 412 | 652 | 453 | 704 | 1.75e-17 | 86.7 |
MsaG016985 | MtrunA17_Chr3g0139561 | 32.086 | 187 | 98 | 7 | 441 | 620 | 191 | 355 | 9.27e-15 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG016985 | AT5G58610.4 | 40.181 | 443 | 237 | 7 | 211 | 649 | 359 | 777 | 1.40e-101 | 330 |
MsaG016985 | AT5G58610.8 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.32e-99 | 328 |
MsaG016985 | AT5G58610.2 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.32e-99 | 328 |
MsaG016985 | AT5G58610.3 | 40.181 | 443 | 237 | 7 | 211 | 649 | 590 | 1008 | 1.76e-99 | 328 |
MsaG016985 | AT5G58610.5 | 40.181 | 443 | 237 | 7 | 211 | 649 | 581 | 999 | 3.16e-99 | 328 |
MsaG016985 | AT5G58610.7 | 40.181 | 443 | 237 | 7 | 211 | 649 | 581 | 999 | 4.86e-99 | 327 |
MsaG016985 | AT5G58610.6 | 38.095 | 441 | 223 | 7 | 211 | 649 | 581 | 973 | 7.20e-88 | 296 |
MsaG016985 | AT5G58610.1 | 38.095 | 441 | 223 | 7 | 211 | 649 | 581 | 973 | 1.15e-87 | 296 |
MsaG016985 | AT5G58610.10 | 39.642 | 391 | 208 | 7 | 211 | 597 | 590 | 956 | 2.83e-84 | 285 |
MsaG016985 | AT5G58610.9 | 39.642 | 391 | 208 | 7 | 211 | 597 | 581 | 947 | 5.12e-84 | 284 |
MsaG016985 | AT5G36740.5 | 32.054 | 443 | 260 | 8 | 215 | 649 | 540 | 949 | 7.09e-70 | 247 |
MsaG016985 | AT5G36740.1 | 32.054 | 443 | 260 | 8 | 215 | 649 | 540 | 949 | 7.09e-70 | 247 |
MsaG016985 | AT5G58610.11 | 38.244 | 353 | 190 | 7 | 211 | 559 | 581 | 909 | 1.02e-68 | 241 |
MsaG016985 | AT1G05380.3 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
MsaG016985 | AT1G05380.1 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
MsaG016985 | AT1G05380.2 | 32.494 | 437 | 260 | 5 | 220 | 649 | 517 | 925 | 3.01e-68 | 242 |
MsaG016985 | AT5G36740.4 | 31.473 | 448 | 266 | 8 | 215 | 649 | 387 | 806 | 1.37e-67 | 239 |
MsaG016985 | AT3G14980.5 | 31.364 | 440 | 266 | 8 | 222 | 655 | 575 | 984 | 1.85e-64 | 231 |
MsaG016985 | AT3G14980.6 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
MsaG016985 | AT3G14980.1 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
MsaG016985 | AT3G14980.2 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 1.98e-64 | 231 |
MsaG016985 | AT3G14980.3 | 31.364 | 440 | 266 | 8 | 222 | 655 | 620 | 1029 | 3.21e-64 | 230 |
MsaG016985 | AT5G36670.4 | 29.847 | 459 | 263 | 10 | 215 | 649 | 540 | 963 | 4.85e-61 | 221 |
MsaG016985 | AT5G36670.5 | 29.847 | 459 | 263 | 10 | 215 | 649 | 540 | 963 | 4.85e-61 | 221 |
MsaG016985 | AT4G14920.2 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.02e-60 | 220 |
MsaG016985 | AT4G14920.1 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.02e-60 | 220 |
MsaG016985 | AT4G14920.3 | 30.155 | 451 | 283 | 6 | 208 | 652 | 562 | 986 | 1.11e-60 | 220 |
MsaG016985 | AT5G36670.3 | 29.310 | 464 | 269 | 10 | 215 | 649 | 387 | 820 | 1.24e-58 | 214 |
MsaG016985 | AT5G36670.2 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
MsaG016985 | AT5G36740.2 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
MsaG016985 | AT5G36740.3 | 31.429 | 385 | 223 | 8 | 215 | 591 | 540 | 891 | 1.79e-58 | 212 |
MsaG016985 | AT5G36670.1 | 29.310 | 464 | 269 | 10 | 215 | 649 | 540 | 973 | 2.74e-58 | 213 |
MsaG016985 | AT5G63900.1 | 36.570 | 309 | 169 | 8 | 346 | 651 | 258 | 542 | 4.97e-58 | 205 |
MsaG016985 | AT3G53680.2 | 28.859 | 447 | 222 | 14 | 224 | 624 | 411 | 807 | 8.31e-44 | 169 |
MsaG016985 | AT3G53680.1 | 28.859 | 447 | 222 | 14 | 224 | 624 | 409 | 805 | 9.47e-44 | 169 |
MsaG016985 | AT3G14980.4 | 30.145 | 345 | 205 | 8 | 222 | 560 | 620 | 934 | 4.64e-42 | 164 |
MsaG016985 | AT2G37520.1 | 26.025 | 488 | 239 | 15 | 224 | 651 | 392 | 817 | 5.68e-42 | 163 |
MsaG016985 | AT2G27980.1 | 26.389 | 504 | 263 | 14 | 217 | 652 | 597 | 1060 | 2.76e-38 | 152 |
MsaG016985 | AT2G36720.1 | 25.272 | 459 | 239 | 13 | 257 | 653 | 557 | 973 | 9.92e-38 | 151 |
MsaG016985 | AT2G36720.2 | 25.272 | 459 | 239 | 13 | 257 | 653 | 557 | 973 | 9.92e-38 | 151 |
Find 118 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCACATTGTTGTTTGCATTT+TGG | 0.154123 | 3:-104499495 | None:intergenic |
GTTGCAACTATAAGAATTTA+TGG | 0.208645 | 3:+104499978 | MsaT016985.1:CDS |
AAGGCCATATAGGTCTATTT+AGG | 0.215735 | 3:-104500259 | None:intergenic |
CCAACTATTGATGCTTTATC+TGG | 0.251503 | 3:+104499846 | MsaT016985.1:CDS |
AACACCATCATTATTTGCTT+TGG | 0.281757 | 3:-104499331 | None:intergenic |
TTCTGTCTGAAGAAGCTATT+AGG | 0.283860 | 3:+104499672 | MsaT016985.1:CDS |
AGGTTGCAAATAAAATAAAT+TGG | 0.285418 | 3:+104499706 | MsaT016985.1:CDS |
TAGGTCTATTTAGGGATTTA+AGG | 0.304954 | 3:-104500250 | None:intergenic |
GTTTGTTCTATTTGTGGTTT+GGG | 0.311387 | 3:+104499351 | MsaT016985.1:CDS |
GCTATTAGGGAAACCAATTA+AGG | 0.314529 | 3:+104499686 | MsaT016985.1:CDS |
AAAGGTATTCACTTGTTTCT+TGG | 0.322354 | 3:+104498971 | MsaT016985.1:CDS |
TGTGTAAAGGCTACAAGATT+TGG | 0.323605 | 3:+104499579 | MsaT016985.1:CDS |
GTTGATAAAGAATCAAGTTT+TGG | 0.324712 | 3:+104498993 | MsaT016985.1:CDS |
AGGCCATATAGGTCTATTTA+GGG | 0.326281 | 3:-104500258 | None:intergenic |
AATCCCTAAATAGACCTATA+TGG | 0.346948 | 3:+104500255 | MsaT016985.1:CDS |
TGTTTGTTCTATTTGTGGTT+TGG | 0.372212 | 3:+104499350 | MsaT016985.1:CDS |
GAAAATGGGTAAAGTCATTT+CGG | 0.376245 | 3:+104499956 | MsaT016985.1:CDS |
TATGGCCTTGTATTGCTTGA+TGG | 0.376913 | 3:+104500273 | MsaT016985.1:CDS |
CTTAGGTCTCGATCAAGTTC+CGG | 0.377173 | 3:+104499425 | MsaT016985.1:CDS |
TTAGGTTCTGGGCAGTTCTC+AGG | 0.378707 | 3:-104498355 | None:intergenic |
CGTGTTAATTTCACTATCAC+TGG | 0.385095 | 3:+104499105 | MsaT016985.1:CDS |
CCCTACTTCAGAACTTGCTT+CGG | 0.386240 | 3:-104499295 | None:intergenic |
CCAGATAAAGCATCAATAGT+TGG | 0.388520 | 3:-104499846 | None:intergenic |
AGTAACAATGTTGTCAAAAG+AGG | 0.388998 | 3:+104499045 | MsaT016985.1:CDS |
TCAGGTTCTATGTTGAAATC+AGG | 0.401611 | 3:-104498337 | None:intergenic |
AGTATTAAAGATGAGTATAA+TGG | 0.402129 | 3:+104498888 | MsaT016985.1:CDS |
GATGGTGTTTGTTCTATTTG+TGG | 0.402818 | 3:+104499345 | MsaT016985.1:CDS |
CAAATTGACACTTGTCTTCA+CGG | 0.405716 | 3:-104500187 | None:intergenic |
TTCTTCAATGCAACTCTCGC+AGG | 0.405765 | 3:-104498410 | None:intergenic |
CAATTTCTTCGTCTCTGTTA+CGG | 0.406401 | 3:+104498479 | MsaT016985.1:CDS |
ACCATCCACTACTATCTTGT+TGG | 0.407099 | 3:+104499161 | MsaT016985.1:CDS |
TGCTATTGCTGCTGCTTCCT+CGG | 0.411590 | 3:-104498590 | None:intergenic |
GCATTCCACCTCGTTTGCTT+AGG | 0.414402 | 3:+104499408 | MsaT016985.1:CDS |
GAGAAGAATTCAGAGGTTTA+CGG | 0.421103 | 3:+104498910 | MsaT016985.1:CDS |
GCTGCTTCCTCGGATTCTCT+TGG | 0.429778 | 3:-104498580 | None:intergenic |
CCCACCGAATTAGTAACTTC+TGG | 0.432390 | 3:-104498790 | None:intergenic |
TCTGTCTGAAGAAGCTATTA+GGG | 0.432712 | 3:+104499673 | MsaT016985.1:CDS |
TTTCACTATCACTGGATTTG+AGG | 0.433458 | 3:+104499113 | MsaT016985.1:CDS |
ATCAAGTTCCGGATGGTGAT+TGG | 0.433575 | 3:+104499436 | MsaT016985.1:CDS |
CATAAACGCTTGAATTTCCA+TGG | 0.434704 | 3:+104499912 | MsaT016985.1:CDS |
TATAAGAATTTATGGTCAAA+AGG | 0.441015 | 3:+104499986 | MsaT016985.1:CDS |
TCAGAGTTCGCATGATGAAA+AGG | 0.443317 | 3:+104499221 | MsaT016985.1:CDS |
CAGATAAAGCATCAATAGTT+GGG | 0.446006 | 3:-104499845 | None:intergenic |
TGTTGCTTCTGCTGTTTCCT+CGG | 0.450642 | 3:-104498524 | None:intergenic |
CAGAGTTCGCATGATGAAAA+GGG | 0.457917 | 3:+104499222 | MsaT016985.1:CDS |
GCTACTGGTGCTGCAGTCGA+AGG | 0.458616 | 3:-104498454 | None:intergenic |
TGAACCAGAAGTTACTAATT+CGG | 0.467506 | 3:+104498786 | MsaT016985.1:CDS |
CAAGCAATACAAGGCCATAT+AGG | 0.468400 | 3:-104500269 | None:intergenic |
CTGCAGTCGAAGGGTGTTTG+AGG | 0.471352 | 3:-104498444 | None:intergenic |
GACGAAGAAATTGCTGCTAC+TGG | 0.475004 | 3:-104498469 | None:intergenic |
GACACGTGGACAAAAGCGTT+TGG | 0.477202 | 3:+104500149 | MsaT016985.1:CDS |
GAGAAACAGTTGACACGCTT+AGG | 0.478300 | 3:+104500086 | MsaT016985.1:CDS |
AGGCTCATGCTGGTTGTACA+AGG | 0.491245 | 3:+104499133 | MsaT016985.1:CDS |
AAATTGACACTTGTCTTCAC+GGG | 0.497364 | 3:-104500186 | None:intergenic |
GAGAGGGAAGGTATCAAAGA+GGG | 0.502506 | 3:+104498936 | MsaT016985.1:CDS |
TACTACGGTGTCAACATCAA+TGG | 0.502626 | 3:+104498738 | MsaT016985.1:CDS |
TTGTCTTCGATATTGTTCCT+TGG | 0.503462 | 3:-104500033 | None:intergenic |
ATCATCAGAAGTTGATTCAT+CGG | 0.513368 | 3:-104498626 | None:intergenic |
GGAAGACGGAAGGTCATTGT+TGG | 0.514903 | 3:+104499182 | MsaT016985.1:CDS |
ACTGGATTTGAGGCTCATGC+TGG | 0.514944 | 3:+104499123 | MsaT016985.1:CDS |
TATCAAAGAGGGAAGGTACA+AGG | 0.524975 | 3:+104498947 | MsaT016985.1:CDS |
CCACGTGTCTATAGCATCCT+CGG | 0.528623 | 3:-104500135 | None:intergenic |
CCGAAGCAAGTTCTGAAGTA+GGG | 0.528703 | 3:+104499295 | MsaT016985.1:CDS |
TCTTCAATGCAACTCTCGCA+GGG | 0.531694 | 3:-104498409 | None:intergenic |
GTTACTAATTCGGTGGGTAG+TGG | 0.540215 | 3:+104498796 | MsaT016985.1:CDS |
TGCAGTCGAAGGGTGTTTGA+GGG | 0.545311 | 3:-104498443 | None:intergenic |
TCCGAAGCAAGTTCTGAAGT+AGG | 0.548155 | 3:+104499294 | MsaT016985.1:CDS |
ACGCTTAGGAGTTGAAAGCT+TGG | 0.553379 | 3:+104500100 | MsaT016985.1:CDS |
CAGACGATTGTGGTAGAAGA+GGG | 0.555231 | 3:+104498863 | MsaT016985.1:CDS |
CTACTGGTGCTGCAGTCGAA+GGG | 0.556866 | 3:-104498453 | None:intergenic |
TGCGAGAGTTGCATTGAAGA+AGG | 0.557070 | 3:+104498412 | MsaT016985.1:CDS |
AACTACCATCAAGCAATACA+AGG | 0.564139 | 3:-104500278 | None:intergenic |
GGACAAAACCAATCACCATC+CGG | 0.566171 | 3:-104499444 | None:intergenic |
CAGAGGTTTACGGTAAGAGA+GGG | 0.567218 | 3:+104498920 | MsaT016985.1:CDS |
TCGGTGGGTAGTGGTAAAAG+AGG | 0.571961 | 3:+104498805 | MsaT016985.1:CDS |
AAATCACATTATAGAAACCA+TGG | 0.572412 | 3:-104499929 | None:intergenic |
GGTAGCCACGAAAACTATCT+CGG | 0.575564 | 3:-104500012 | None:intergenic |
TATAATGGAGAAGAATTCAG+AGG | 0.575599 | 3:+104498903 | MsaT016985.1:CDS |
TCAGACGATTGTGGTAGAAG+AGG | 0.577488 | 3:+104498862 | MsaT016985.1:CDS |
TCAGAGGTTTACGGTAAGAG+AGG | 0.577597 | 3:+104498919 | MsaT016985.1:CDS |
GTAACAATGTTGTCAAAAGA+GGG | 0.581494 | 3:+104499046 | MsaT016985.1:CDS |
TGTTCTATTTGTGGTTTGGG+AGG | 0.585455 | 3:+104499354 | MsaT016985.1:CDS |
ACTACTATCTTGTTGGAAGA+CGG | 0.590421 | 3:+104499168 | MsaT016985.1:CDS |
AAAGCGACCAAGAGAATCCG+AGG | 0.592053 | 3:+104498573 | MsaT016985.1:CDS |
AGAGAGGGAAGGTATCAAAG+AGG | 0.595325 | 3:+104498935 | MsaT016985.1:CDS |
GTTTCCAAAGCAAATAATGA+TGG | 0.599744 | 3:+104499327 | MsaT016985.1:CDS |
ACCAGAAGTTACTAATTCGG+TGG | 0.600989 | 3:+104498789 | MsaT016985.1:CDS |
AAAGAGATTGAGAGAATCCG+AGG | 0.612293 | 3:+104498507 | MsaT016985.1:CDS |
GAGAAGAATTCAGACGATTG+TGG | 0.613172 | 3:+104498853 | MsaT016985.1:CDS |
GTCATTGTTGGAATGTCAGA+GGG | 0.614589 | 3:+104499194 | MsaT016985.1:CDS |
AGAGGGAAGGTACAAGGGAA+AGG | 0.618121 | 3:+104498953 | MsaT016985.1:CDS |
GTCTTCCAACAAGATAGTAG+TGG | 0.619064 | 3:-104499166 | None:intergenic |
GGTCATTGTTGGAATGTCAG+AGG | 0.622266 | 3:+104499193 | MsaT016985.1:CDS |
AAAGAAGAGAAAGTTGAATG+TGG | 0.626130 | 3:+104499794 | MsaT016985.1:CDS |
CCAGAAGTTACTAATTCGGT+GGG | 0.626761 | 3:+104498790 | MsaT016985.1:CDS |
TTCTGAATCAACTTCTGACG+AGG | 0.630454 | 3:+104498672 | MsaT016985.1:CDS |
TCCAACAAGATAGTAGTGGA+TGG | 0.630549 | 3:-104499162 | None:intergenic |
CAAACGAGGTGGAATGCAGA+AGG | 0.631169 | 3:-104499402 | None:intergenic |
GAGAGTTGCATTGAAGAAGG+AGG | 0.635933 | 3:+104498415 | MsaT016985.1:CDS |
GGGTAGTGGTAAAAGAGGAA+AGG | 0.636646 | 3:+104498810 | MsaT016985.1:CDS |
AGAGTTGCATTGAAGAAGGA+GGG | 0.637310 | 3:+104498416 | MsaT016985.1:CDS |
ATCAAAGAGGGAAGGTACAA+GGG | 0.637578 | 3:+104498948 | MsaT016985.1:CDS |
CTATCTTGTTGGAAGACGGA+AGG | 0.639850 | 3:+104499172 | MsaT016985.1:CDS |
GGGAAGGTATCAAAGAGGGA+AGG | 0.651040 | 3:+104498940 | MsaT016985.1:CDS |
AGAGTTCGCATGATGAAAAG+GGG | 0.652963 | 3:+104499223 | MsaT016985.1:CDS |
TCTATGTTGAAATCAGGAGG+TGG | 0.653673 | 3:-104498331 | None:intergenic |
GGTTCTATGTTGAAATCAGG+AGG | 0.654128 | 3:-104498334 | None:intergenic |
GGTTTACGGTAAGAGAGGGA+AGG | 0.658054 | 3:+104498924 | MsaT016985.1:CDS |
AAGATTTGGATCTAGTCACA+TGG | 0.660288 | 3:+104499593 | MsaT016985.1:CDS |
AATTTGAGTAGTGATGATGA+TGG | 0.661624 | 3:+104499741 | MsaT016985.1:CDS |
AAGGAACAATATCGAAGACA+AGG | 0.663403 | 3:+104500035 | MsaT016985.1:CDS |
CCGAGGATGCTATAGACACG+TGG | 0.685477 | 3:+104500135 | MsaT016985.1:CDS |
TTGAGTAGTGATGATGATGG+CGG | 0.685672 | 3:+104499744 | MsaT016985.1:CDS |
GGTCTCGATCAAGTTCCGGA+TGG | 0.685979 | 3:+104499429 | MsaT016985.1:CDS |
GATCGAGACCTAAGCAAACG+AGG | 0.703690 | 3:-104499416 | None:intergenic |
CGAGACCTAAGCAAACGAGG+TGG | 0.726299 | 3:-104499413 | None:intergenic |
CGTGTCTATAGCATCCTCGG+AGG | 0.738184 | 3:-104500132 | None:intergenic |
TGAAAAGGGGAATCATTGTG+TGG | 0.749018 | 3:+104499236 | MsaT016985.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 104498316 | 104500292 | 104498316 | ID=MsaG016985 |
Chr3 | mRNA | 104498316 | 104500292 | 104498316 | ID=MsaT016985.1;Parent=MsaG016985 |
Chr3 | exon | 104498316 | 104500292 | 104498316 | ID=MsaT016985.1.exon1;Parent=MsaT016985.1 |
Chr3 | CDS | 104498316 | 104500292 | 104498316 | ID=cds.MsaT016985.1;Parent=MsaT016985.1 |
Gene Sequence |
Protein sequence |