AlfalfaGEDB | MsaG017023

M. sativa ssp. caerulea / MsaG017023

KEGG: K09338
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017023	XP_013461831.1	83.607	305	31	5	1	298	12	304	5.56e-152	437

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017023	sp\|P46665\|HAT14_ARATH	54.098	183	76	4	89	271	151	325	2.69e-54	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017023	tr\|A0A072V2J8\|A0A072V2J8_MEDTR	83.607	305	31	5	1	298	12	304	2.66e-152	437

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017023	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000030	MsaG017023	0.832801	1.390876e-55	4.365088e-53
MsaG000062	MsaG017023	0.816309	1.025391e-51	2.049145e-49
MsaG000071	MsaG017023	0.843759	2.147446e-58	9.448191e-56
MsaG000083	MsaG017023	0.824283	1.554260e-53	3.833941e-51
MsaG000110	MsaG017023	0.835161	3.592666e-56	1.209200e-53
MsaG000113	MsaG017023	0.845640	6.722460e-59	3.146207e-56
MsaG000118	MsaG017023	0.818771	2.875797e-52	6.123543e-50
MsaG000151	MsaG017023	0.881469	4.965165e-70	9.597825e-67
MsaG000153	MsaG017023	0.878320	6.476919e-69	1.081791e-65
MsaG000187	MsaG017023	0.829615	8.371783e-55	2.396367e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017023	MtrunA17_Chr3g0135331	83.607	305	31	5	1	298	12	304	5.12e-156	437
MsaG017023	MtrunA17_Chr1g0151971	48.485	297	123	11	6	294	11	285	1.40e-72	225
MsaG017023	MtrunA17_Chr5g0400781	58.084	167	59	4	124	290	114	269	2.78e-56	182
MsaG017023	MtrunA17_Chr7g0258831	69.048	126	36	2	123	248	150	272	2.48e-54	178
MsaG017023	MtrunA17_Chr1g0175651	50.249	201	90	4	50	250	78	268	1.67e-53	176
MsaG017023	MtrunA17_Chr4g0054421	64.567	127	42	2	122	248	116	239	1.44e-51	171
MsaG017023	MtrunA17_Chr2g0308611	64.341	129	43	2	124	252	191	316	1.31e-49	167
MsaG017023	MtrunA17_Chr4g0055851	53.165	158	67	3	123	276	110	264	2.56e-49	165
MsaG017023	MtrunA17_Chr8g0335131	67.521	117	34	2	132	247	145	258	9.10e-48	162
MsaG017023	MtrunA17_Chr5g0399491	62.205	127	44	2	123	248	126	249	2.60e-47	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017023	AT5G06710.1	54.098	183	76	4	89	271	151	325	2.73e-55	182
MsaG017023	AT4G37790.1	67.717	127	38	2	122	248	115	238	5.92e-53	174
MsaG017023	AT2G22800.1	67.200	125	38	2	124	248	104	225	7.33e-51	169
MsaG017023	AT4G16780.1	42.324	241	96	4	43	248	10	242	3.17e-50	167
MsaG017023	AT3G60390.1	62.992	127	43	2	122	247	151	274	2.56e-48	164
MsaG017023	AT5G47370.1	61.719	128	45	2	122	248	119	243	8.80e-47	159
MsaG017023	AT4G17460.1	61.905	126	44	2	124	248	126	248	1.13e-46	158
MsaG017023	AT2G44910.1	63.248	117	41	1	132	248	162	276	3.26e-45	155
MsaG017023	AT2G01430.1	55.639	133	48	3	122	248	122	249	2.76e-40	142
MsaG017023	AT1G70920.1	50.388	129	53	2	121	248	56	174	4.77e-35	126

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTTGCACCGGCAC+CGG	0.514546	3:+104979312	MsaT017023.1:CDS
AAAGCTGAAACAAACGGAAG+TGG	0.530773	3:+104979131	MsaT017023.1:CDS
AAATAATTACACGCAGCTTC+CGG	0.391339	3:+104979260	MsaT017023.1:CDS
AACAGAAGAGAACAAGAGGC+TGG	0.492600	3:+104979188	MsaT017023.1:CDS
AAGAGAAATATCAAAATTCA+TGG	0.395654	3:-104977777	None:intergenic
AAGCCTAAGTTTCTTCCTAC+TGG	0.393408	3:-104978158	None:intergenic
AATCAAAGCCGTGGTGTGAG+AGG	0.529506	3:-104979367	None:intergenic
ACAAACGGAAGTGGACTGTG+AGG	0.696543	3:+104979140	MsaT017023.1:CDS
ACAAAGCAAGAAGATTAAGG+AGG	0.671987	3:+104977835	MsaT017023.1:CDS
ACCGGCACCGGCACCGGCAC+CGG	0.348075	3:+104979330	MsaT017023.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	104977770	104979473	104977770	ID=MsaG017023
Chr3	mRNA	104977770	104979473	104977770	ID=MsaT017023.1;Parent=MsaG017023
Chr3	exon	104977770	104978240	104977770	ID=MsaT017023.1.exon1;Parent=MsaT017023.1
Chr3	CDS	104977770	104978240	104977770	ID=cds.MsaT017023.1;Parent=MsaT017023.1
Chr3	exon	104978672	104978751	104978672	ID=MsaT017023.1.exon2;Parent=MsaT017023.1
Chr3	CDS	104978672	104978751	104978672	ID=cds.MsaT017023.1;Parent=MsaT017023.1
Chr3	exon	104979128	104979473	104979128	ID=MsaT017023.1.exon3;Parent=MsaT017023.1
Chr3	CDS	104979128	104979473	104979128	ID=cds.MsaT017023.1;Parent=MsaT017023.1

Gene Sequence

>MsaT017023.1

ATGAACACCATGAATTTTGATATTTCTCTTGGTCTTGGTCGTGGCCTTCATGAACAAAGACATAAACAAAGCAAGAAGATTAAGGAGGAAGAGGAGGATCCATGTAATAAGGCATACCCATATTCTCTTACCTTAGGAGTTGGATCCCCTAATAATAATATTGAAGAGACAGATAATCATCAAGTAGCTACTACTACAACAAAGACTGAATCGGATGAGTTTATTTATAATTTGCATCAACGTGCCTCTAATTCTACTAGCGTGATGTCTTCATTTTCCAACTCCTCTAATAGCATCAAGAGGGAGAGAAATGATTTCAACAGCCAAGAAGTACATCATGAGCCAGAGAAGATTTCATTTGTTGATGCTGATGATGTAAATGATAACTCCAGTAGGAAGAAACTTAGGCTTACCAAAGAACAATCCTCAATCTTGGAGGACACCTTCAAAGATCATTGTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGCAAGCTGAATCTTCGGACGAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGGGCAAGGACAAAGCTGAAACAAACGGAAGTGGACTGTGAGGCACTGAAGCATTGTTATGAAACTCTAACAGAAGAGAACAAGAGGCTGGAAGAGGAGTTGAAAGAGCTTAAGTCCATGAAAACAACGGCACAACCAGTAAATAATTACACGCAGCTTCCGGTTGCCAGTCTTACAGTTTGCCCTTCTTGTAAAAGAATTTGCACCGGCACCGGCACCGGCACCGGCACCGGCGATGAGAATGGCTCCTCTCACACCACGGCTTTGATTCTCTGCCCAAAGGCCCAAATTCACTTCTATGCAAATAATAATAACTATACGTTCGCCAAATCTTCTGCAACTATTGCTAGCTAG

Protein sequence

>MsaT017023.1

MNTMNFDISLGLGRGLHEQRHKQSKKIKEEEEDPCNKAYPYSLTLGVGSPNNNIEETDNHQVATTTTKTESDEFIYNLHQRASNSTSVMSSFSNSSNSIKRERNDFNSQEVHHEPEKISFVDADDVNDNSSRKKLRLTKEQSSILEDTFKDHCTLNPKQKQELASKLNLRTRQVEVWFQNRRARTKLKQTEVDCEALKHCYETLTEENKRLEEELKELKSMKTTAQPVNNYTQLPVASLTVCPSCKRICTGTGTGTGTGDENGSSHTTALILCPKAQIHFYANNNNYTFAKSSATIAS*