AlfalfaGEDB | MsaG017057

M. sativa ssp. caerulea / MsaG017057

KEGG: K09419
GO: GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017057	XP_039687742.1	96.063	381	12	1	1	381	1	378	0.0	753

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017057	sp\|O80982\|HSFA2_ARATH	51.862	349	124	7	36	379	31	340	2.53e-120	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017057	tr\|G7J7P1\|G7J7P1_MEDTR	96.063	381	12	1	1	381	1	378	0.0	753

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TFs/TRs:

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Gene ID	Type	Classification
MsaG017057	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG017057	0.835028	3.879008e-56	1.300489e-53
MsaG000285	MsaG017057	0.808568	4.949553e-50	8.165531e-48
MsaG000325	MsaG017057	0.809227	3.582714e-50	6.004861e-48
MsaG000419	MsaG017057	0.819036	2.505815e-52	5.373022e-50
MsaG000426	MsaG017057	0.846606	3.681298e-59	1.778939e-56
MsaG000467	MsaG017057	0.805921	1.789417e-49	2.771765e-47
MsaG000497	MsaG017057	0.851376	1.765954e-60	1.003564e-57
MsaG001273	MsaG017057	0.817146	6.670382e-52	1.362010e-49
MsaG001399	MsaG017057	0.858390	1.663148e-62	1.216886e-59
MsaG001438	MsaG017057	0.848491	1.122135e-59	5.776375e-57

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017057	MtrunA17_Chr3g0135831	96.063	381	12	1	1	381	1	378	0.0	753
MsaG017057	MtrunA17_Chr7g0260331	54.924	264	112	2	8	264	8	271	6.12e-94	285
MsaG017057	MtrunA17_Chr1g0204741	62.963	216	73	4	36	246	27	240	9.73e-92	278
MsaG017057	MtrunA17_Chr5g0410881	55.357	224	84	4	36	247	21	240	1.99e-80	255
MsaG017057	MtrunA17_Chr4g0071051	40.431	371	177	11	24	376	76	420	6.44e-77	243
MsaG017057	MtrunA17_Chr4g0039891	54.808	208	86	2	48	247	11	218	3.23e-73	236
MsaG017057	MtrunA17_Chr1g0185131	44.224	303	143	8	36	331	19	302	3.68e-73	231
MsaG017057	MtrunA17_Chr6g0485571	45.274	201	106	2	49	249	11	207	6.18e-53	179
MsaG017057	MtrunA17_Chr8g0379701	40.517	232	130	2	48	275	11	238	4.90e-49	170
MsaG017057	MtrunA17_Chr8g0392001	45.876	194	98	2	49	235	22	215	5.43e-49	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017057	AT2G26150.1	51.862	349	124	7	36	379	31	340	2.57e-121	355
MsaG017057	AT2G26150.4	51.862	349	124	7	36	379	31	340	2.57e-121	355
MsaG017057	AT3G22830.1	44.258	357	158	8	36	359	48	396	5.94e-89	274
MsaG017057	AT3G51910.1	55.357	224	79	3	39	256	19	227	7.04e-77	239
MsaG017057	AT4G17750.1	51.570	223	91	2	47	252	50	272	3.11e-76	244
MsaG017057	AT1G32330.1	44.816	299	146	7	15	298	3	297	2.56e-75	241
MsaG017057	AT1G32330.2	44.816	299	146	7	15	298	3	297	3.19e-75	241
MsaG017057	AT5G16820.1	50.655	229	97	3	27	244	10	233	1.37e-74	239
MsaG017057	AT5G16820.2	50.655	229	97	3	27	244	10	233	1.37e-74	239
MsaG017057	AT3G02990.1	53.589	209	86	3	48	247	22	228	2.05e-73	236

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Find 81 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGATCCGGATCGAT+GGG	0.538609	3:+105274657	MsaT017057.1:CDS
AAATAATGATAATTGGACTG+TGG	0.619002	3:+105275407	MsaT017057.1:CDS
AAATCTTACACCAAAACCAA+TGG	0.575232	3:+105274137	MsaT017057.1:CDS
AAATTACTCTCATTACCACT+TGG	0.571022	3:-105275267	None:intergenic
AACCACAGACTCAATTGGCA+CGG	0.620284	3:-105275118	None:intergenic
AACTCTTCATCTTCCTCTTC+GGG	0.307939	3:+105274111	MsaT017057.1:CDS
AAGATGATTCTGGAGCTATA+AGG	0.413178	3:+105275094	MsaT017057.1:CDS
AAGGGAGCAATTATCTGCTA+TGG	0.496135	3:+105274900	MsaT017057.1:CDS
AAGTGGTAATGAGAGTAATT+TGG	0.259305	3:+105275269	MsaT017057.1:CDS
AATGGAAGGATTGCACGAAA+TGG	0.400329	3:+105274155	MsaT017057.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	105274042	105275470	105274042	ID=MsaG017057
Chr3	mRNA	105274042	105275470	105274042	ID=MsaT017057.1;Parent=MsaG017057
Chr3	exon	105274042	105274365	105274042	ID=MsaT017057.1.exon1;Parent=MsaT017057.1
Chr3	CDS	105274042	105274365	105274042	ID=cds.MsaT017057.1;Parent=MsaT017057.1
Chr3	exon	105274649	105275470	105274649	ID=MsaT017057.1.exon2;Parent=MsaT017057.1
Chr3	CDS	105274649	105275470	105274649	ID=cds.MsaT017057.1;Parent=MsaT017057.1

Gene Sequence

>MsaT017057.1

ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCATGTAACTCTTCATCTTCCTCTTCGGGTTCAAATCTTACACCAAAACCAATGGAAGGATTGCACGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCGGAGCTCGTAATAGCTTTGTTGTTTGGGATCTTCACAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTAGCTGGGCAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTGACACAATCACAAGCTATGCAGCAAGAGACTGGTGGTGCTTGTATTGAATTAGGGGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGACAGGGCTGTTTTAATGGCTGAGATTGTGAAGTTAAGGCAGCAGCAGCATAATTCAAGGGAGCAATTATCTGCTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAGATGATGAATTTTCTTGCAAAAGCACTTAGCAATCAATCTTTTATACAACAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAAGATGATTCTGGAGCTATAAGGGCCGTGCCAATTGAGTCTGTGGTTGATTACTCTTGTCACGAGCAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTACAGTGCATTGAGTTCAGTTCCAAGTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAAGATGAAGTTGTGATTGGTGATTTTTCTCAAATTGATGTGCCCGTGGAGGATTTGGTAGAAAATAATGATAATTGGACTGTGGATTTGCAGAGCCTTGTTGATCAAATGGGTTTTGAACCTTAG

Protein sequence

>MsaT017057.1

MKGIRVKEEETLAYVSVVGSTSCNSSSSSSGSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQAMQQETGGACIELGEYGLEGEIERLRRDRAVLMAEIVKLRQQQHNSREQLSAMEARLLITEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASSSLENLQDDSGAIRAVPIESVVDYSCHEQQEGLTTIESEMETLLSAYDNESSSEVKDYSALSSVPSGNESNLGDAVWEDLLNQELVGGNPEDEVVIGDFSQIDVPVEDLVENNDNWTVDLQSLVDQMGFEP*