AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017072


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017072 MtrunA17_Chr1g0150801 78.313 83 17 1 14 96 79 160 2.36e-43 138
MsaG017072 MtrunA17_Chr8g0383251 69.136 81 21 1 14 94 88 164 1.55e-35 119
MsaG017072 MtrunA17_Chr1g0194481 63.095 84 31 0 13 96 133 216 4.02e-33 116
MsaG017072 MtrunA17_Chr7g0270191 60.976 82 32 0 15 96 122 203 4.06e-32 113
MsaG017072 MtrunA17_Chr2g0294231 69.333 75 23 0 22 96 187 261 1.01e-31 114
MsaG017072 MtrunA17_Chr3g0129321 66.667 72 24 0 25 96 105 176 5.17e-31 108
MsaG017072 MtrunA17_Chr4g0051881 67.606 71 23 0 25 95 165 235 1.24e-30 110
MsaG017072 MtrunA17_Chr5g0418781 66.250 80 26 1 15 94 102 180 2.38e-30 108
MsaG017072 MtrunA17_Chr3g0129361 60.811 74 29 0 21 94 127 200 9.70e-30 105
MsaG017072 MtrunA17_Chr8g0386241 56.627 83 35 1 13 95 79 160 2.48e-29 103
MsaG017072 MtrunA17_Chr4g0068541 62.667 75 28 0 22 96 192 266 2.58e-29 108
MsaG017072 MtrunA17_Chr7g0224801 63.768 69 25 0 27 95 82 150 1.77e-28 100
MsaG017072 MtrunA17_Chr5g0445311 59.211 76 31 0 19 94 345 420 6.46e-28 105
MsaG017072 MtrunA17_Chr5g0445311 51.724 58 27 1 38 95 200 256 3.86e-12 60.8
MsaG017072 MtrunA17_Chr5g0443131 65.714 70 24 0 25 94 144 213 7.79e-28 102
MsaG017072 MtrunA17_Chr3g0079691 58.228 79 33 0 16 94 473 551 9.21e-28 105
MsaG017072 MtrunA17_Chr3g0079691 50.000 58 28 1 38 95 280 336 1.55e-13 64.7
MsaG017072 MtrunA17_Chr3g0101131 60.526 76 30 0 19 94 396 471 1.01e-27 105
MsaG017072 MtrunA17_Chr3g0101131 51.724 58 27 1 38 95 243 299 1.80e-12 61.6
MsaG017072 MtrunA17_Chr8g0335811 55.844 77 34 0 18 94 134 210 3.03e-27 99.4
MsaG017072 MtrunA17_Chr7g0218081 55.844 77 34 0 18 94 390 466 3.32e-27 103
MsaG017072 MtrunA17_Chr7g0218081 50.877 57 27 1 38 94 228 283 1.00e-12 62.4
MsaG017072 MtrunA17_Chr8g0383351 58.667 75 30 1 21 94 142 216 3.79e-27 99.4
MsaG017072 MtrunA17_Chr5g0418191 55.263 76 34 0 19 94 301 376 2.77e-26 100
MsaG017072 MtrunA17_Chr5g0418191 50.877 57 27 1 38 94 151 206 3.58e-12 60.8
MsaG017072 MtrunA17_Chr3g0106491 53.571 84 39 0 11 94 338 421 3.73e-26 100
MsaG017072 MtrunA17_Chr3g0106491 47.222 72 33 2 28 95 184 254 2.15e-16 72.8
MsaG017072 MtrunA17_Chr5g0432161 51.190 84 41 0 11 94 394 477 4.73e-26 100
MsaG017072 MtrunA17_Chr5g0432161 53.448 58 26 1 38 95 244 300 3.36e-16 72.4
MsaG017072 MtrunA17_Chr4g0004911 55.263 76 34 0 19 94 317 392 5.04e-26 99.8
MsaG017072 MtrunA17_Chr4g0004911 51.724 58 28 0 38 95 184 241 1.01e-16 73.6
MsaG017072 MtrunA17_Chr7g0249311 52.632 76 36 0 19 94 373 448 1.41e-25 99.0
MsaG017072 MtrunA17_Chr7g0249311 44.048 84 39 3 15 98 163 238 2.13e-14 67.0
MsaG017072 MtrunA17_Chr7g0243891 55.263 76 34 0 19 94 355 430 1.98e-25 98.6
MsaG017072 MtrunA17_Chr7g0243891 55.172 58 25 1 38 95 216 272 3.06e-16 72.4
MsaG017072 MtrunA17_Chr7g0249301 50.649 77 38 0 18 94 272 348 5.12e-25 96.3
MsaG017072 MtrunA17_Chr7g0249301 46.250 80 35 3 15 94 46 117 6.65e-14 65.5
MsaG017072 MtrunA17_Chr4g0075201 51.316 76 36 1 21 95 250 325 2.17e-24 95.5
MsaG017072 MtrunA17_Chr4g0042831 55.714 70 31 0 25 94 265 334 3.02e-24 94.4
MsaG017072 MtrunA17_Chr4g0042831 49.123 57 29 0 38 94 145 201 1.32e-12 62.0
MsaG017072 MtrunA17_Chr5g0447701 58.333 72 30 0 23 94 237 308 9.30e-24 92.8
MsaG017072 MtrunA17_Chr7g0248721 56.410 78 33 1 18 95 121 197 2.73e-23 89.0
MsaG017072 MtrunA17_Chr2g0288871 48.684 76 38 1 21 95 288 363 3.78e-23 92.0
MsaG017072 MtrunA17_Chr7g0263531 53.623 69 32 0 26 94 349 417 6.54e-23 90.9
MsaG017072 MtrunA17_Chr7g0263531 51.786 56 26 1 39 94 190 244 1.37e-12 62.0
MsaG017072 MtrunA17_Chr1g0189391 54.167 72 32 1 24 94 83 154 1.09e-22 89.4
MsaG017072 MtrunA17_Chr7g0270831 50.000 72 35 1 25 95 203 274 2.98e-22 89.0
MsaG017072 MtrunA17_Chr7g0238921 60.000 60 24 0 38 97 124 183 3.57e-22 87.8
MsaG017072 MtrunA17_Chr4g0051181 52.000 75 35 1 22 95 227 301 3.86e-22 89.0
MsaG017072 MtrunA17_Chr2g0333851 52.703 74 32 2 25 95 154 227 4.48e-22 87.4
MsaG017072 MtrunA17_Chr3g0099641 43.529 85 47 1 11 94 224 308 6.99e-22 88.2
MsaG017072 MtrunA17_Chr2g0322391 48.000 75 38 1 21 94 332 406 1.64e-21 87.4
MsaG017072 MtrunA17_Chr1g0188941 46.575 73 39 0 22 94 35 107 1.71e-21 81.6
MsaG017072 MtrunA17_Chr6g0485431 49.296 71 35 1 25 94 141 211 4.00e-21 85.5
MsaG017072 MtrunA17_Chr7g0216891 51.389 72 34 1 25 95 206 277 1.55e-20 84.7
MsaG017072 MtrunA17_Chr4g0074001 59.677 62 25 0 33 94 354 415 2.25e-20 84.0
MsaG017072 MtrunA17_Chr5g0401821 49.296 71 35 1 25 94 186 256 2.16e-19 79.7
MsaG017072 MtrunA17_Chr4g0060271 49.296 71 35 1 25 94 242 312 4.74e-19 80.5
MsaG017072 MtrunA17_Chr1g0150281 44.737 76 39 2 22 94 122 197 1.02e-18 78.2
MsaG017072 MtrunA17_Chr1g0147881 48.718 78 36 2 18 94 245 319 1.49e-18 78.2
MsaG017072 MtrunA17_Chr4g0001361 52.459 61 28 1 36 95 160 220 1.62e-18 77.8
MsaG017072 MtrunA17_Chr2g0302391 47.297 74 38 1 22 94 195 268 2.22e-18 78.2
MsaG017072 MtrunA17_Chr3g0136961 52.632 57 26 1 39 94 139 195 2.33e-18 77.4
MsaG017072 MtrunA17_Chr8g0348311 42.529 87 47 3 11 96 130 214 4.02e-18 77.0
MsaG017072 MtrunA17_Chr4g0025051 48.611 72 36 1 25 95 322 393 6.73e-18 77.0
MsaG017072 MtrunA17_Chr4g0053281 46.154 78 38 2 18 94 249 323 1.14e-17 75.9
MsaG017072 MtrunA17_Chr4g0025061 48.611 72 36 1 25 95 347 418 1.22e-17 76.3
MsaG017072 MtrunA17_Chr4g0071521 47.436 78 37 2 18 94 228 302 1.80e-17 75.1
MsaG017072 MtrunA17_Chr1g0184691 45.946 74 39 1 22 94 277 350 5.16e-17 74.3
MsaG017072 MtrunA17_Chr7g0270051 56.897 58 24 1 39 95 54 111 7.53e-17 72.8
MsaG017072 MtrunA17_Chr7g0228941 47.692 65 33 1 34 97 48 112 8.05e-17 70.1
MsaG017072 MtrunA17_Chr5g0447711 46.377 69 37 0 26 94 218 286 2.26e-16 72.0
MsaG017072 MtrunA17_Chr3g0139021 40.741 81 47 1 15 94 291 371 7.00e-16 71.2
MsaG017072 MtrunA17_Chr2g0293481 51.724 58 27 1 39 95 268 325 2.39e-15 69.7
MsaG017072 MtrunA17_Chr7g0248691 42.697 89 47 3 10 96 127 213 2.86e-15 69.3
MsaG017072 MtrunA17_Chr1g0150271 45.000 60 32 1 36 94 99 158 3.13e-15 68.6
MsaG017072 MtrunA17_Chr8g0387501 51.667 60 28 1 37 95 128 187 3.95e-15 68.2
MsaG017072 MtrunA17_Chr8g0379461 52.632 57 26 1 39 94 77 133 1.44e-14 66.6
MsaG017072 MtrunA17_Chr2g0319961 46.269 67 35 1 29 94 71 137 1.98e-14 66.2
MsaG017072 MtrunA17_Chr3g0126391 48.333 60 28 1 37 93 132 191 6.09e-14 65.5
MsaG017072 MtrunA17_Chr2g0284321 49.123 57 28 1 39 94 36 92 1.08e-13 63.9
MsaG017072 MtrunA17_Chr1g0202461 50.877 57 27 1 39 94 262 318 1.32e-13 64.7
MsaG017072 MtrunA17_Chr4g0024391 40.278 72 42 1 25 95 216 287 3.87e-13 63.5
MsaG017072 MtrunA17_Chr5g0432071 49.123 57 28 1 38 94 104 159 4.03e-13 62.0
MsaG017072 MtrunA17_Chr2g0289181 44.444 63 34 1 33 94 9 71 3.04e-12 60.1
MsaG017072 MtrunA17_Chr5g0419241 46.667 45 24 0 21 65 60 104 4.01e-12 57.4
MsaG017072 MtrunA17_Chr7g0244981 47.458 59 28 1 38 93 122 180 1.46e-11 58.5
MsaG017072 MtrunA17_Chr8g0387981 42.373 59 31 1 38 93 132 190 2.18e-11 58.5
MsaG017072 MtrunA17_Chr2g0315361 43.939 66 34 1 31 93 141 206 3.20e-11 57.8
MsaG017072 MtrunA17_Chr5g0402931 44.262 61 32 1 35 95 120 178 4.34e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017072 AT5G26170.1 81.081 74 14 0 25 98 100 173 6.19e-42 135
MsaG017072 AT5G64810.1 67.568 74 24 0 24 97 96 169 1.14e-34 117
MsaG017072 AT2G47260.1 63.095 84 31 0 13 96 149 232 1.28e-32 115
MsaG017072 AT4G18170.1 62.353 85 32 0 11 95 145 229 2.45e-32 115
MsaG017072 AT5G49520.1 68.919 74 23 0 22 95 205 278 3.39e-32 115
MsaG017072 AT1G29860.1 67.568 74 24 0 22 95 120 193 1.64e-31 112
MsaG017072 AT4G39410.1 62.195 82 30 1 18 98 203 284 5.42e-31 111
MsaG017072 AT1G69310.4 65.000 80 28 0 15 94 124 203 6.96e-31 110
MsaG017072 AT1G69310.2 65.000 80 28 0 15 94 124 203 6.96e-31 110
MsaG017072 AT1G69310.1 65.000 80 28 0 15 94 124 203 6.96e-31 110
MsaG017072 AT3G62340.1 64.286 84 28 1 12 95 94 175 1.33e-30 109
MsaG017072 AT1G64000.1 54.217 83 37 1 14 95 89 171 9.52e-29 102
MsaG017072 AT5G46350.1 64.789 71 25 0 25 95 170 240 9.56e-29 105
MsaG017072 AT5G13080.1 59.722 72 29 0 24 95 53 124 1.78e-28 100
MsaG017072 AT2G46130.1 50.575 87 43 0 9 95 1 87 4.00e-28 98.6
MsaG017072 AT3G01970.1 60.000 70 28 0 25 94 52 121 4.69e-28 99.8
MsaG017072 AT4G26640.5 60.526 76 30 0 19 94 186 261 6.65e-28 104
MsaG017072 AT4G26640.5 50.000 60 29 1 36 95 33 91 1.57e-12 62.0
MsaG017072 AT4G26640.6 60.526 76 30 0 19 94 186 261 6.65e-28 104
MsaG017072 AT4G26640.6 50.000 60 29 1 36 95 33 91 1.57e-12 62.0
MsaG017072 AT4G26640.4 60.526 76 30 0 19 94 186 261 6.65e-28 104
MsaG017072 AT4G26640.4 50.000 60 29 1 36 95 33 91 1.57e-12 62.0
MsaG017072 AT4G26640.3 60.526 76 30 0 19 94 186 261 6.65e-28 104
MsaG017072 AT4G26640.3 50.000 60 29 1 36 95 33 91 1.57e-12 62.0
MsaG017072 AT4G26640.7 60.526 76 30 0 19 94 322 397 7.90e-28 105
MsaG017072 AT4G26640.7 50.000 60 29 1 36 95 169 227 1.12e-12 62.8
MsaG017072 AT4G26640.1 60.526 76 30 0 19 94 290 365 8.16e-28 105
MsaG017072 AT4G26640.1 50.000 60 29 1 36 95 137 195 1.14e-12 62.4
MsaG017072 AT4G26640.2 60.526 76 30 0 19 94 362 437 8.88e-28 105
MsaG017072 AT4G26640.2 50.000 60 29 1 36 95 209 267 1.02e-12 62.8
MsaG017072 AT2G44745.1 57.143 77 33 0 18 94 125 201 1.13e-27 100
MsaG017072 AT5G07100.2 56.757 74 32 0 21 94 124 197 3.21e-27 99.4
MsaG017072 AT5G07100.2 46.552 58 31 0 38 95 24 81 3.93e-14 65.5
MsaG017072 AT5G07100.4 56.757 74 32 0 21 94 124 197 3.21e-27 99.4
MsaG017072 AT5G07100.4 46.552 58 31 0 38 95 24 81 3.93e-14 65.5
MsaG017072 AT5G07100.5 56.757 74 32 0 21 94 124 197 3.21e-27 99.4
MsaG017072 AT5G07100.5 46.552 58 31 0 38 95 24 81 3.93e-14 65.5
MsaG017072 AT5G07100.3 56.757 74 32 0 21 94 124 197 3.21e-27 99.4
MsaG017072 AT5G07100.3 46.552 58 31 0 38 95 24 81 3.93e-14 65.5
MsaG017072 AT5G56270.1 56.962 79 34 0 16 94 465 543 5.61e-27 103
MsaG017072 AT5G56270.1 50.877 57 27 1 38 94 273 328 1.67e-12 62.0
MsaG017072 AT5G07100.1 54.545 77 35 0 18 94 214 290 7.43e-27 100
MsaG017072 AT5G07100.1 46.552 58 31 0 38 95 117 174 8.39e-14 65.5
MsaG017072 AT4G26440.1 54.430 79 36 0 16 94 350 428 7.44e-27 102
MsaG017072 AT4G26440.1 47.368 57 29 1 38 94 178 233 6.47e-13 63.2
MsaG017072 AT5G41570.1 53.165 79 37 0 17 95 77 155 7.92e-27 97.4
MsaG017072 AT2G21900.1 46.602 103 47 2 2 96 65 167 4.09e-26 96.3
MsaG017072 AT1G69310.3 61.250 80 27 1 15 94 124 199 8.11e-26 97.1
MsaG017072 AT1G13960.1 52.632 76 36 0 19 94 390 465 1.39e-25 99.0
MsaG017072 AT1G13960.1 54.386 57 25 1 38 94 229 284 1.40e-14 68.2
MsaG017072 AT2G38470.1 55.263 76 34 0 19 94 343 418 1.80e-25 99.0
MsaG017072 AT2G38470.1 50.000 58 28 1 38 95 184 240 4.08e-14 66.6
MsaG017072 AT1G13960.2 52.632 76 36 0 19 94 237 312 6.06e-25 96.3
MsaG017072 AT1G13960.2 54.386 57 25 1 38 94 76 131 6.70e-14 65.9
MsaG017072 AT3G01080.2 52.326 86 39 1 9 94 317 400 7.32e-25 97.1
MsaG017072 AT3G01080.1 52.326 86 39 1 9 94 279 362 8.15e-25 96.7
MsaG017072 AT2G03340.1 51.316 76 37 0 19 94 396 471 4.32e-24 95.1
MsaG017072 AT2G03340.1 52.632 57 26 1 38 94 250 305 2.24e-13 64.7
MsaG017072 AT2G30250.1 52.632 76 36 0 19 94 309 384 1.44e-23 92.8
MsaG017072 AT2G30250.1 35.000 100 49 3 11 95 124 222 4.99e-11 57.8
MsaG017072 AT2G46130.2 47.126 87 42 1 9 95 1 83 5.48e-23 85.5
MsaG017072 AT4G04450.2 44.706 85 46 1 12 95 172 256 8.43e-23 90.9
MsaG017072 AT4G22070.4 44.706 85 46 1 12 95 271 355 1.31e-22 90.9
MsaG017072 AT4G22070.3 44.706 85 46 1 12 95 271 355 1.31e-22 90.9
MsaG017072 AT4G22070.2 44.706 85 46 1 12 95 271 355 1.31e-22 90.9
MsaG017072 AT4G22070.1 44.706 85 46 1 12 95 271 355 1.31e-22 90.9
MsaG017072 AT1G55600.1 45.349 86 46 1 12 96 280 365 1.34e-22 90.5
MsaG017072 AT2G04880.1 51.948 77 37 0 18 94 287 363 3.25e-22 89.7
MsaG017072 AT2G04880.1 45.000 60 32 1 36 95 109 167 1.40e-11 59.3
MsaG017072 AT2G04880.2 51.948 77 37 0 18 94 263 339 3.33e-22 89.4
MsaG017072 AT2G04880.2 45.000 60 32 1 36 95 109 167 1.40e-11 59.3
MsaG017072 AT4G04450.1 44.706 85 46 1 12 95 266 350 3.89e-22 89.4
MsaG017072 AT1G62300.1 50.000 76 37 1 21 95 295 370 6.01e-22 89.0
MsaG017072 AT5G15130.2 46.250 80 42 1 16 94 163 242 7.87e-22 88.6
MsaG017072 AT5G15130.1 46.250 80 42 1 16 94 205 284 8.59e-22 88.6
MsaG017072 AT1G68150.1 50.667 75 36 1 22 95 219 293 6.34e-21 85.5
MsaG017072 AT2G25000.2 52.459 61 28 1 39 98 104 164 6.85e-21 83.2
MsaG017072 AT2G25000.4 52.459 61 28 1 39 98 104 164 6.85e-21 83.2
MsaG017072 AT2G25000.3 52.459 61 28 1 39 98 126 186 1.67e-20 82.8
MsaG017072 AT2G25000.1 52.459 61 28 1 39 98 147 207 2.03e-20 82.8
MsaG017072 AT4G31800.2 56.140 57 24 1 39 94 112 168 2.23e-20 82.4
MsaG017072 AT4G01720.1 43.373 83 46 1 14 95 215 297 4.69e-20 83.6
MsaG017072 AT4G31800.1 42.857 84 47 1 12 94 150 233 6.88e-20 82.0
MsaG017072 AT5G43290.1 55.932 59 26 0 36 94 112 170 1.22e-19 80.9
MsaG017072 AT4G30935.1 47.619 84 39 1 11 94 309 387 1.27e-19 82.4
MsaG017072 AT2G37260.3 56.452 62 27 0 33 94 264 325 1.58e-19 81.3
MsaG017072 AT2G37260.3 46.667 75 35 2 24 94 67 140 1.30e-12 62.4
MsaG017072 AT2G37260.2 56.452 62 27 0 33 94 262 323 1.76e-19 81.3
MsaG017072 AT2G37260.2 46.667 75 35 2 24 94 65 138 1.45e-12 62.0
MsaG017072 AT2G37260.1 56.452 62 27 0 33 94 344 405 2.30e-19 81.3
MsaG017072 AT2G37260.1 46.667 75 35 2 24 94 147 220 1.28e-12 62.4
MsaG017072 AT1G18860.1 44.737 76 41 1 21 95 222 297 4.29e-19 80.9
MsaG017072 AT1G80840.1 43.243 74 39 2 25 95 131 204 2.31e-18 77.8
MsaG017072 AT4G31550.2 54.098 61 27 1 35 94 242 302 1.14e-17 76.3
MsaG017072 AT4G31550.1 54.098 61 27 1 35 94 243 303 1.15e-17 76.3
MsaG017072 AT4G24240.1 45.783 83 44 1 13 94 256 338 1.16e-17 76.3
MsaG017072 AT2G23320.1 45.783 83 44 1 13 94 215 297 1.72e-17 75.5
MsaG017072 AT3G04670.1 48.649 74 37 1 22 94 246 319 3.75e-17 74.7
MsaG017072 AT2G30590.1 44.156 77 42 1 22 97 297 373 5.57e-17 74.7
MsaG017072 AT5G28650.1 48.649 74 37 1 22 94 246 319 6.88e-17 73.9
MsaG017072 AT5G52830.1 58.621 58 23 1 39 95 166 223 7.58e-17 73.9
MsaG017072 AT2G24570.1 46.154 78 38 2 18 94 226 300 7.84e-17 73.9
MsaG017072 AT1G29280.1 53.448 58 26 1 39 95 75 132 8.03e-17 73.2
MsaG017072 AT4G01250.1 39.773 88 50 2 10 96 102 187 1.13e-16 73.2
MsaG017072 AT2G34830.2 46.479 71 36 2 27 95 212 282 4.24e-16 72.4
MsaG017072 AT2G34830.1 46.479 71 36 2 27 95 203 273 4.40e-16 72.0
MsaG017072 AT1G30650.1 46.479 71 36 2 27 95 205 275 6.10e-16 71.6
MsaG017072 AT3G58710.2 50.000 68 33 1 29 95 61 128 7.35e-16 70.5
MsaG017072 AT3G58710.1 50.000 68 33 1 29 95 62 129 7.50e-16 70.5
MsaG017072 AT1G69810.2 43.210 81 44 2 17 95 124 204 1.48e-15 70.5
MsaG017072 AT1G69810.1 43.210 81 44 2 17 95 182 262 1.56e-15 70.5
MsaG017072 AT5G45050.4 47.297 74 32 2 29 95 1026 1099 1.64e-15 70.9
MsaG017072 AT5G45050.1 47.297 74 32 2 29 95 1165 1238 2.24e-15 70.5
MsaG017072 AT5G45050.2 47.297 74 32 2 29 95 1137 1210 2.49e-15 70.1
MsaG017072 AT4G23550.1 47.619 63 32 1 33 94 135 197 1.51e-14 67.4
MsaG017072 AT3G01080.3 49.123 57 28 1 38 94 205 260 3.88e-12 60.8
MsaG017072 AT1G66560.1 50.000 58 26 1 38 92 103 160 3.95e-12 60.5
MsaG017072 AT1G66600.1 48.438 64 30 1 37 97 102 165 4.96e-12 60.1
MsaG017072 AT3G56400.1 42.188 64 34 1 33 93 115 178 1.14e-11 59.3
MsaG017072 AT2G46400.1 43.056 72 38 1 25 93 91 162 1.60e-11 58.9
MsaG017072 AT5G01900.1 35.802 81 49 1 15 92 87 167 3.07e-11 58.2
MsaG017072 AT2G40740.3 47.458 59 28 1 38 93 182 240 3.82e-11 58.2
MsaG017072 AT4G11070.1 45.763 59 29 1 38 93 141 199 4.05e-11 58.2
MsaG017072 AT5G45260.1 34.940 83 49 2 18 95 1186 1268 7.20e-11 57.4
MsaG017072 AT1G66550.2 40.000 75 42 1 26 97 91 165 8.12e-11 56.6
MsaG017072 AT1G80590.1 46.552 58 28 1 39 93 86 143 8.26e-11 56.6
MsaG017072 AT1G66550.1 40.000 75 42 1 26 97 96 170 8.65e-11 56.6

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTCAGAGGTTGAAATTC+TGG 0.266650 3:-105456249 MsaT017072.1:CDS
TTGGTTTGTGTCATATTTAT+AGG 0.324455 3:-105456332 MsaT017072.1:CDS
ATAGGAGGTGTCAGCAATAA+AGG 0.363243 3:-105456314 MsaT017072.1:CDS
TGTAGATGTTACCTTGGATT+GGG 0.377512 3:+105456176 None:intergenic
TTGTTTACAGGAACTACTAT+AGG 0.382242 3:-105456026 MsaT017072.1:intron
CAGAATTTCAACCTCTGACT+TGG 0.388820 3:+105456250 None:intergenic
GAGGTTGAAATTCTGGATGA+TGG 0.407475 3:-105456242 MsaT017072.1:CDS
AAATTCTGGATGATGGGTTC+AGG 0.414441 3:-105456235 MsaT017072.1:CDS
TAGGTTGTTATTACATAACT+TGG 0.446464 3:+105455949 None:intergenic
AACTTGATCTAGTGAAAACT+TGG 0.453876 3:+105455907 None:intergenic
ATGTAGATGTTACCTTGGAT+TGG 0.470249 3:+105456175 None:intergenic
TGGATGATGGGTTCAGGTGG+AGG 0.514242 3:-105456229 MsaT017072.1:CDS
TACTATAGGTGTTCAGTGGA+TGG 0.515134 3:-105456012 MsaT017072.1:CDS
GGGTTCAGGTGGAGGAAGTA+CGG 0.526912 3:-105456221 MsaT017072.1:CDS
AGGTTGAAATTCTGGATGAT+GGG 0.535485 3:-105456241 MsaT017072.1:CDS
CAGCAATAAAGGTGAGAAGA+AGG 0.542475 3:-105456303 MsaT017072.1:CDS
GAGGAAGTACGGAAAGAAGA+TGG 0.552357 3:-105456210 MsaT017072.1:CDS
GTTTGTGTCATATTTATAGG+AGG 0.565606 3:-105456329 MsaT017072.1:CDS
AAAGAGAGTTGAGAGAGATG+TGG 0.568317 3:-105455977 MsaT017072.1:CDS
TTCTGGATGATGGGTTCAGG+TGG 0.569211 3:-105456232 MsaT017072.1:CDS
TGCATTCAAAACCAAGTCAG+AGG 0.595589 3:-105456261 MsaT017072.1:CDS
ATGAGTATGTGTGCCTTCGT+AGG 0.623197 3:+105455930 None:intergenic
GTAGATGTTACCTTGGATTG+GGG 0.647468 3:+105456177 None:intergenic
GAACTACTATAGGTGTTCAG+TGG 0.652914 3:-105456016 MsaT017072.1:CDS
TATGTAATAACAACCTACGA+AGG 0.679326 3:-105455943 MsaT017072.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 105455915 105456360 105455915 ID=MsaG017072
Chr3 mRNA 105455915 105456360 105455915 ID=MsaT017072.1;Parent=MsaG017072
Chr3 exon 105455915 105456038 105455915 ID=MsaT017072.1.exon2;Parent=MsaT017072.1
Chr3 CDS 105455915 105456038 105455915 ID=cds.MsaT017072.1;Parent=MsaT017072.1
Chr3 exon 105456188 105456360 105456188 ID=MsaT017072.1.exon1;Parent=MsaT017072.1
Chr3 CDS 105456188 105456360 105456188 ID=cds.MsaT017072.1;Parent=MsaT017072.1
Gene Sequence

>MsaT017072.1

ATGTCATTGGTTTGTGTCATATTTATAGGAGGTGTCAGCAATAAAGGTGAGAAGAAGGAAATTAGAGATCATAAAGTTGCATTCAAAACCAAGTCAGAGGTTGAAATTCTGGATGATGGGTTCAGGTGGAGGAAGTACGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGAACTACTATAGGTGTTCAGTGGATGGATGCCAAGTGAAAAAGAGAGTTGAGAGAGATGTGGACGATCCAAGTTATGTAATAACAACCTACGAAGGCACACATACTCATCCAAGTTTTCACTAG

Protein sequence

>MsaT017072.1

MSLVCVIFIGGVSNKGEKKEIRDHKVAFKTKSEVEILDDGFRWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDVDDPSYVITTYEGTHTHPSFH*