AlfalfaGEDB | MsaG017078

M. sativa ssp. caerulea / MsaG017078

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017078	AES73439.1	85.323	511	43	7	1	492	1	498	0.0	856

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017078	tr\|G7J8D2\|G7J8D2_MEDTR	85.323	511	43	7	1	492	1	498	0.0	856

TFs/TRs:

Gene ID	Type	Classification
MsaG017078	TF	RWP-RK

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000070	MsaG017078	0.841589	8.045737e-58	3.302277e-55
MsaG000262	MsaG017078	0.815400	1.632301e-51	3.187476e-49
MsaG000314	MsaG017078	0.801493	1.470330e-48	2.056153e-46
MsaG000366	MsaG017078	0.817959	4.384407e-52	9.141496e-50
MsaG000425	MsaG017078	0.812889	5.814182e-51	1.065938e-48
MsaG000690	MsaG017078	0.811458	1.189079e-50	2.104233e-48
MsaG000686	MsaG017078	0.814584	2.472076e-51	4.728644e-49
MsaG000720	MsaG017078	0.838743	4.415715e-57	1.657355e-54
MsaG000856	MsaG017078	0.808017	6.477127e-50	1.054518e-47
MsaG000940	MsaG017078	0.813152	5.095111e-51	9.402540e-49
MsaG001046	MsaG017078	0.802382	9.673909e-49	1.380562e-46
MsaG001056	MsaG017078	0.809812	2.686433e-50	4.566953e-48
MsaG001057	MsaG017078	0.823843	1.969483e-53	4.800403e-51
MsaG001809	MsaG017078	0.846666	3.545511e-59	1.716777e-56
MsaG002170	MsaG017078	0.816179	1.096184e-51	2.183330e-49
MsaG002201	MsaG017078	0.828704	1.388513e-54	3.872710e-52
MsaG002373	MsaG017078	0.852284	9.785431e-61	5.741445e-58
MsaG002814	MsaG017078	0.801527	1.447570e-48	2.025867e-46
MsaG003141	MsaG017078	0.851027	2.212962e-60	1.242583e-57
MsaG003310	MsaG017078	0.827077	3.405028e-54	9.073276e-52
MsaG003351	MsaG017078	0.870894	2.107153e-66	2.536074e-63
MsaG003708	MsaG017078	0.822435	4.181048e-53	9.809885e-51
MsaG003789	MsaG017078	0.804189	4.105435e-49	6.108153e-47
MsaG003808	MsaG017078	0.814357	2.772273e-51	5.273146e-49
MsaG003974	MsaG017078	0.838878	4.075192e-57	1.536054e-54
MsaG004114	MsaG017078	0.814161	3.062576e-51	5.796409e-49
MsaG004157	MsaG017078	0.804575	3.414698e-49	5.125984e-47
MsaG004307	MsaG017078	0.823531	2.328042e-53	5.626562e-51
MsaG004344	MsaG017078	0.849057	7.830977e-60	4.110043e-57
MsaG004881	MsaG017078	0.801510	1.458906e-48	2.040958e-46
MsaG005045	MsaG017078	0.814645	2.396359e-51	4.590940e-49
MsaG005310	MsaG017078	0.852178	1.048576e-60	6.129263e-58
MsaG005325	MsaG017078	0.846386	4.223511e-59	2.026112e-56
MsaG005368	MsaG017078	0.813261	4.821179e-51	8.921433e-49
MsaG005460	MsaG017078	0.823026	3.051089e-53	7.273979e-51
MsaG005439	MsaG017078	0.813861	3.564412e-51	6.695849e-49
MsaG005616	MsaG017078	0.801331	1.586499e-48	2.210546e-46
MsaG005617	MsaG017078	0.801912	1.207391e-48	1.704654e-46
MsaG006035	MsaG017078	0.815570	1.496816e-51	2.935471e-49
MsaG005921	MsaG017078	0.816257	1.053287e-51	2.102061e-49
MsaG005922	MsaG017078	0.848898	8.668889e-60	4.525045e-57
MsaG006120	MsaG017078	0.818449	3.399678e-52	7.178630e-50
MsaG006178	MsaG017078	0.805743	1.949184e-49	3.006660e-47
MsaG006239	MsaG017078	0.822426	4.200690e-53	9.853680e-51
MsaG006307	MsaG017078	0.837342	1.008817e-56	3.625910e-54
MsaG006513	MsaG017078	0.801501	1.465046e-48	2.049132e-46
MsaG006560	MsaG017078	0.858420	1.630108e-62	1.194048e-59
MsaG006901	MsaG017078	0.824108	1.707812e-53	4.192727e-51
MsaG006942	MsaG017078	0.816886	7.628041e-52	1.547082e-49
MsaG007146	MsaG017078	0.802517	9.080147e-49	1.299809e-46
MsaG007368	MsaG017078	0.804908	2.910707e-49	4.403463e-47
MsaG007357	MsaG017078	0.823383	2.520424e-53	6.067300e-51
MsaG007434	MsaG017078	0.807787	7.247434e-50	1.173414e-47
MsaG007541	MsaG017078	0.829673	8.103546e-55	2.323339e-52
MsaG007648	MsaG017078	0.812167	8.345696e-51	1.502799e-48
MsaG007919	MsaG017078	0.827906	2.158081e-54	5.886066e-52
MsaG008058	MsaG017078	0.826634	4.339408e-54	1.142128e-51
MsaG008081	MsaG017078	0.834761	4.525701e-56	1.505226e-53
MsaG008106	MsaG017078	0.824950	1.084137e-53	2.723423e-51
MsaG008225	MsaG017078	0.840106	1.961960e-57	7.684465e-55
MsaG008193	MsaG017078	0.814145	3.086393e-51	5.839281e-49
MsaG008316	MsaG017078	0.818628	3.097977e-52	6.572154e-50
MsaG008337	MsaG017078	0.819488	1.978973e-52	4.293949e-50
MsaG008630	MsaG017078	0.829397	9.452705e-55	2.688722e-52
MsaG009005	MsaG017078	0.831843	2.395162e-55	7.310948e-53
MsaG009073	MsaG017078	0.817466	5.657491e-52	1.164687e-49
MsaG009094	MsaG017078	0.820974	9.067604e-53	2.046435e-50
MsaG009230	MsaG017078	0.807206	9.611769e-50	1.534689e-47
MsaG009254	MsaG017078	0.808454	5.232619e-50	8.608828e-48
MsaG009281	MsaG017078	0.832658	1.508696e-55	4.715039e-53
MsaG010098	MsaG017078	0.807809	7.169070e-50	1.161341e-47
MsaG010126	MsaG017078	0.815272	1.742084e-51	3.390894e-49
MsaG010386	MsaG017078	0.822234	4.651868e-53	1.085577e-50
MsaG010429	MsaG017078	0.861715	1.667944e-63	1.384398e-60
MsaG010498	MsaG017078	0.826621	4.369822e-54	1.149731e-51
MsaG010452	MsaG017078	0.827123	3.320095e-54	8.858545e-52
MsaG011186	MsaG017078	0.805975	1.743769e-49	2.704426e-47
MsaG011257	MsaG017078	0.807250	9.411212e-50	1.504200e-47
MsaG011658	MsaG017078	0.819133	2.381224e-52	5.119103e-50
MsaG011997	MsaG017078	0.821412	7.196320e-53	1.642938e-50
MsaG012141	MsaG017078	0.827418	2.823004e-54	7.594767e-52
MsaG012331	MsaG017078	0.834002	7.002247e-56	2.276462e-53
MsaG012348	MsaG017078	0.813608	4.049677e-51	7.559226e-49
MsaG012378	MsaG017078	0.813711	3.843737e-51	7.193357e-49
MsaG012447	MsaG017078	0.851095	2.118305e-60	1.192219e-57
MsaG012454	MsaG017078	0.802161	1.073694e-48	1.524475e-46
MsaG012572	MsaG017078	0.819586	1.879770e-52	4.089076e-50
MsaG012610	MsaG017078	0.807257	9.379001e-50	1.499319e-47
MsaG013238	MsaG017078	0.825694	7.241629e-54	1.856899e-51
MsaG014048	MsaG017078	0.814309	2.841273e-51	5.397675e-49
MsaG015328	MsaG017078	0.812488	7.108585e-51	1.290340e-48
MsaG016516	MsaG017078	0.801000	1.852892e-48	2.562370e-46
MsaG016521	MsaG017078	0.819005	2.546176e-52	5.455075e-50
MsaG017078	MsaG017250	0.867270	3.118272e-65	3.228321e-62
MsaG017078	MsaG017256	0.844080	1.763204e-58	7.838689e-56
MsaG017078	MsaG017407	0.816502	9.288045e-52	1.865277e-49
MsaG017078	MsaG017566	0.818575	3.184391e-52	6.746093e-50
MsaG017078	MsaG017676	0.801740	1.309456e-48	1.841506e-46
MsaG017078	MsaG017723	0.820856	9.650490e-53	2.171000e-50
MsaG017078	MsaG017741	0.813754	3.760408e-51	7.045176e-49
MsaG017078	MsaG017784	0.885195	2.158782e-71	4.993076e-68
MsaG017078	MsaG017887	0.810746	1.693034e-50	2.944259e-48
MsaG017078	MsaG018059	0.810699	1.733336e-50	3.010819e-48
MsaG017078	MsaG018159	0.807565	8.073220e-50	1.300121e-47
MsaG017078	MsaG018493	0.808075	6.298012e-50	1.026763e-47
MsaG017078	MsaG018809	0.804907	2.912923e-49	4.406639e-47
MsaG017078	MsaG018928	0.826168	5.597362e-54	1.454290e-51
MsaG017078	MsaG018970	0.822401	4.257360e-53	9.979959e-51
MsaG017078	MsaG019020	0.851386	1.754301e-60	9.973181e-58
MsaG017078	MsaG019130	0.823200	2.779319e-53	6.657309e-51
MsaG017078	MsaG019301	0.828306	1.730688e-54	4.773516e-52
MsaG017078	MsaG019325	0.823388	2.513536e-53	6.051550e-51
MsaG017078	MsaG019355	0.847634	1.930287e-59	9.655051e-57
MsaG017078	MsaG019426	0.801920	1.203042e-48	1.698804e-46
MsaG017078	MsaG019737	0.845839	5.939588e-59	2.798024e-56
MsaG017078	MsaG019738	0.840273	1.775038e-57	6.989094e-55
MsaG017078	MsaG020220	0.855298	1.340903e-61	8.756743e-59
MsaG017078	MsaG020345	0.800248	2.633676e-48	3.580769e-46
MsaG017078	MsaG020657	0.802201	1.053831e-48	1.497628e-46
MsaG017078	MsaG020758	0.813197	4.978956e-51	9.198791e-49
MsaG017078	MsaG020775	0.813715	3.836312e-51	7.180155e-49
MsaG017078	MsaG020784	0.849659	5.333448e-60	2.857380e-57
MsaG017078	MsaG020892	0.811468	1.183045e-50	2.094092e-48
MsaG017078	MsaG020906	0.806003	1.720308e-49	2.669750e-47
MsaG017078	MsaG020907	0.834202	6.241980e-56	2.041521e-53
MsaG017078	MsaG020934	0.801289	1.618174e-48	2.252480e-46
MsaG017078	MsaG020982	0.846200	4.743140e-59	2.261442e-56
MsaG017078	MsaG021108	0.814967	2.034900e-51	3.930390e-49
MsaG017078	MsaG021323	0.801031	1.826770e-48	2.528002e-46
MsaG017078	MsaG021782	0.806043	1.687512e-49	2.621446e-47
MsaG017078	MsaG022392	0.802040	1.136894e-48	1.609753e-46
MsaG017078	MsaG022426	0.832703	1.470816e-55	4.602810e-53
MsaG017078	MsaG022780	0.822635	3.757374e-53	8.863738e-51
MsaG017078	MsaG023153	0.805531	2.158497e-49	3.312974e-47
MsaG017078	MsaG023259	0.831960	2.242834e-55	6.869015e-53
MsaG017078	MsaG023575	0.801639	1.373088e-48	1.926563e-46
MsaG017078	MsaG023667	0.850316	3.500552e-60	1.917598e-57
MsaG017078	MsaG023703	0.805429	2.267153e-49	3.471504e-47
MsaG017078	MsaG023967	0.809194	3.641643e-50	6.098849e-48
MsaG017078	MsaG024001	0.809902	2.570559e-50	4.379381e-48
MsaG017078	MsaG024666	0.851377	1.764493e-60	1.002784e-57
MsaG017078	MsaG024918	0.809963	2.493651e-50	4.254625e-48
MsaG017078	MsaG025325	0.840103	1.964960e-57	7.695521e-55
MsaG017078	MsaG025416	0.803379	6.035895e-49	8.813392e-47
MsaG017078	MsaG025861	0.801896	1.216868e-48	1.717405e-46
MsaG017078	MsaG026479	0.822469	4.104966e-53	9.640429e-51
MsaG017078	MsaG027022	0.871783	1.074471e-66	1.343146e-63
MsaG017078	MsaG027085	0.862492	9.658571e-64	8.263346e-61
MsaG017078	MsaG027160	0.842190	5.593888e-58	2.340261e-55
MsaG017078	MsaG027359	0.804640	3.309732e-49	4.975918e-47
MsaG017078	MsaG027414	0.828431	1.614945e-54	4.470240e-52
MsaG017078	MsaG027462	0.832145	2.019335e-55	6.218054e-53
MsaG017078	MsaG027652	0.813091	5.251259e-51	9.676269e-49
MsaG017078	MsaG027745	0.813245	4.861634e-51	8.992557e-49
MsaG017078	MsaG028043	0.801930	1.197268e-48	1.691032e-46
MsaG017078	MsaG028204	0.840452	1.594712e-57	6.314310e-55
MsaG017078	MsaG028760	0.808045	6.388939e-50	1.040860e-47
MsaG017078	MsaG029161	0.805429	2.267153e-49	3.471504e-47
MsaG017078	MsaG029193	0.810985	1.504001e-50	2.630840e-48
MsaG017078	MsaG029308	0.811223	1.336157e-50	2.350969e-48
MsaG017078	MsaG029309	0.815514	1.540361e-51	3.016521e-49
MsaG017078	MsaG029396	0.811860	9.730028e-51	1.738953e-48
MsaG017078	MsaG029342	0.804990	2.798431e-49	4.241675e-47
MsaG017078	MsaG029734	0.816994	7.213998e-52	1.467223e-49
MsaG017078	MsaG029846	0.805647	2.042086e-49	3.142874e-47
MsaG017078	MsaG029939	0.850040	4.176833e-60	2.266776e-57
MsaG017078	MsaG029941	0.841503	8.474808e-58	3.468894e-55
MsaG017078	MsaG029922	0.825004	1.053189e-53	2.649562e-51
MsaG017078	MsaG030222	0.804975	2.819535e-49	4.272090e-47
MsaG017078	MsaG031057	0.810380	2.029865e-50	3.498762e-48
MsaG017078	MsaG031063	0.803021	7.151816e-49	1.035680e-46
MsaG017078	MsaG031667	0.812193	8.239432e-51	1.484638e-48
MsaG017078	MsaG031786	0.800317	2.550223e-48	3.472775e-46
MsaG017078	MsaG031787	0.814622	2.423960e-51	4.641195e-49
MsaG017078	MsaG031819	0.824999	1.056037e-53	2.656344e-51
MsaG017078	MsaG032026	0.859010	1.088305e-62	8.149157e-60
MsaG017078	MsaG032178	0.805172	2.565326e-49	3.904833e-47
MsaG017078	MsaG032638	0.805864	1.839687e-49	2.845761e-47
MsaG017078	MsaG033021	0.808986	4.033520e-50	6.721680e-48
MsaG017078	MsaG033805	0.819504	1.961869e-52	4.258621e-50
MsaG017078	MsaG033823	0.802043	1.135526e-48	1.607917e-46
MsaG017078	MsaG033967	0.823976	1.833028e-53	4.484040e-51
MsaG017078	MsaG033977	0.803266	6.366679e-49	9.272169e-47
MsaG017078	MsaG034149	0.824096	1.719106e-53	4.219036e-51
MsaG017078	MsaG034173	0.839402	2.985624e-57	1.143814e-54
MsaG017078	MsaG034177	0.822066	5.087977e-53	1.181997e-50
MsaG017078	MsaG034439	0.804044	4.397943e-49	6.521723e-47
MsaG017078	MsaG034709	0.805910	1.799381e-49	2.786418e-47
MsaG017078	MsaG034713	0.824231	1.598274e-53	3.936879e-51
MsaG017078	MsaG034957	0.805731	1.961205e-49	3.024302e-47
MsaG017078	MsaG035662	0.807177	9.748230e-50	1.555451e-47
MsaG017078	MsaG035699	0.819355	2.120689e-52	4.585654e-50
MsaG017078	MsaG036108	0.828741	1.360190e-54	3.797635e-52
MsaG017078	MsaG036714	0.817438	5.738019e-52	1.180463e-49
MsaG017078	MsaG036844	0.828861	1.273227e-54	3.566806e-52
MsaG017078	MsaG038498	0.807754	7.363468e-50	1.191240e-47
MsaG017078	MsaG039424	0.823106	2.922267e-53	6.981939e-51
MsaG017078	MsaG039607	0.838052	6.643263e-57	2.440343e-54
MsaG017078	MsaG039771	0.816929	7.459489e-52	1.514625e-49
MsaG017078	MsaG039871	0.813644	3.975102e-51	7.426837e-49
MsaG017078	MsaG039961	0.811742	1.031748e-50	1.838596e-48
MsaG017078	MsaG040365	0.800082	2.845640e-48	3.854558e-46
MsaG017078	MsaG040680	0.828896	1.248212e-54	3.500351e-52
MsaG017078	MsaG040767	0.827821	2.262313e-54	6.155632e-52
MsaG017078	MsaG041055	0.814490	2.591781e-51	4.946118e-49
MsaG017078	MsaG041320	0.815492	1.557210e-51	3.047882e-49
MsaG017078	MsaG041354	0.818785	2.854845e-52	6.081171e-50
MsaG017078	MsaG041973	0.823017	3.064462e-53	7.304223e-51
MsaG017078	MsaG042101	0.824751	1.207450e-53	3.016662e-51
MsaG017078	MsaG042118	0.811615	1.099175e-50	1.952662e-48
MsaG017078	MsaG042123	0.848090	1.446506e-59	7.347832e-57
MsaG017078	MsaG043390	0.804067	4.350007e-49	6.454035e-47
MsaG017078	MsaG044052	0.817675	5.077222e-52	1.050854e-49
MsaG017078	MsaG044119	0.805786	1.910029e-49	2.949190e-47
MsaG017078	MsaG044316	0.801842	1.247953e-48	1.759115e-46
MsaG017078	MsaG044904	0.801989	1.164591e-48	1.647056e-46
MsaG017078	MsaG045212	0.820867	9.592176e-53	2.158577e-50
MsaG017078	MsaG045311	0.832870	1.337198e-55	4.205097e-53
MsaG017078	MsaG045438	0.838533	5.000087e-57	1.864459e-54
MsaG017078	MsaG045558	0.810301	2.109998e-50	3.629832e-48
MsaG017078	MsaG045662	0.805871	1.833309e-49	2.836404e-47
MsaG017078	MsaG045758	0.800870	1.969441e-48	2.715573e-46
MsaG017078	MsaG045695	0.810630	1.793599e-50	3.110320e-48
MsaG017078	MsaG045871	0.806566	1.310946e-49	2.061878e-47
MsaG017078	MsaG046006	0.805432	2.264372e-49	3.467451e-47
MsaG017078	MsaG046214	0.806838	1.148900e-49	1.818555e-47
MsaG017078	MsaG046264	0.810395	2.014906e-50	3.474250e-48
MsaG017078	MsaG046299	0.803480	5.753439e-49	8.420468e-47
MsaG017078	MsaG046403	0.843342	2.772775e-58	1.203790e-55
MsaG017078	MsaG046360	0.824106	1.709680e-53	4.197053e-51
MsaG017078	MsaG046601	0.871234	1.629910e-66	1.990062e-63
MsaG017078	MsaG046638	0.866422	5.791937e-65	5.792835e-62
MsaG017078	MsaG047088	0.847191	2.550630e-59	1.257028e-56
MsaG017078	MsaG002643	0.821381	7.313969e-53	1.668463e-50
MsaG017078	MsaG004516	0.819958	1.547290e-52	3.399307e-50
MsaG017078	MsaG002445	0.844038	1.809486e-58	8.032951e-56
MsaG017078	MsaG006591	0.880534	1.072581e-69	1.985080e-66
MsaG017078	MsaG008180	0.809451	3.209870e-50	5.409514e-48
MsaG017078	MsaG013001	0.850336	3.455840e-60	1.894508e-57
MsaG017078	MsaG011705	0.813175	5.036532e-51	9.299862e-49
MsaG017078	MsaG012253	0.802961	7.358144e-49	1.064076e-46
MsaG017078	MsaG016720	0.821269	7.761839e-53	1.765422e-50
MsaG017078	MsaG016849	0.841478	8.604251e-58	3.519077e-55
MsaG017078	MsaG023305	0.847599	1.972532e-59	9.855245e-57
MsaG017078	MsaG020007	0.802628	8.614397e-49	1.236295e-46
MsaG017078	MsaG023050	0.828369	1.671827e-54	4.619601e-52
MsaG017078	MsaG019642	0.807428	8.628044e-50	1.384967e-47
MsaG017078	MsaG021171	0.825586	7.679535e-54	1.963181e-51
MsaG017078	MsaG028385	0.822411	4.235178e-53	9.930647e-51
MsaG017078	MsaG025579	0.813226	4.908692e-51	9.075603e-49
MsaG017078	MsaG029639	0.812783	6.129672e-51	1.120827e-48
MsaG017078	MsaG033085	0.812573	6.812601e-51	1.239226e-48
MsaG017078	MsaG032081	0.825336	8.797208e-54	2.233484e-51
MsaG017078	MsaG031702	0.813272	4.796449e-51	8.877877e-49
MsaG017078	MsaG031806	0.822624	3.780471e-53	8.915472e-51
MsaG017078	MsaG031279	0.807891	6.889086e-50	1.118201e-47
MsaG017078	MsaG035246	0.805491	2.201328e-49	3.375511e-47
MsaG017078	MsaG037392	0.814014	3.298764e-51	6.220480e-49
MsaG017078	MsaG036708	0.807601	7.933948e-50	1.278783e-47
MsaG017078	MsaG039794	0.811300	1.285770e-50	2.266598e-48
MsaG017078	MsaG037217	0.802687	8.379490e-49	1.204162e-46
MsaG017078	MsaG042498	0.820862	9.620782e-53	2.164681e-50
MsaG017078	MsaG043242	0.803800	4.939874e-49	7.283659e-47
MsaG017078	MsaG046894	0.835350	3.220413e-56	1.090068e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017078	MtrunA17_Chr3g0136081	81.579	532	45	7	1	492	1	519	0.0	843
MsaG017078	MtrunA17_Chr3g0105711	51.434	558	180	15	2	491	7	541	4.09e-159	462
MsaG017078	MtrunA17_Chr5g0406901	50.725	69	32	1	387	455	199	265	2.69e-12	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017078	AT5G16100.2	32.721	272	128	11	252	476	177	440	3.29e-33	131

Find 104 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACCTTTCTGTGGGGCCATC+TGG	0.198703	3:+105501204	None:intergenic
GGCAATACATTGGAATTAAA+TGG	0.208227	3:+105502657	None:intergenic
TTCCAACTCCATGAAGATTT+TGG	0.209996	3:+105502778	None:intergenic
AATCTTATTCAAAATAATTC+AGG	0.275363	3:-105501684	MsaT017078.1:intron
ACCACAATGTTTAATCATTT+CGG	0.280881	3:+105500990	None:intergenic
CACCATCAGATACCTGTTAA+TGG	0.281140	3:-105502006	MsaT017078.1:CDS
TTTGAAAAGCTTGAGATTCA+TGG	0.294484	3:-105502057	MsaT017078.1:CDS
TTGGATTGATGATATTAATA+TGG	0.313839	3:-105501709	MsaT017078.1:CDS
CTTGGTGGTAGTAATAATAA+TGG	0.330532	3:-105502687	MsaT017078.1:CDS
ACCATCAGATACCTGTTAAT+GGG	0.352749	3:-105502005	MsaT017078.1:CDS
ACTGATGGGGCCCCATTAAC+AGG	0.356308	3:+105501994	None:intergenic
GGGGTCCATGCCGAGTTTGT+TGG	0.357115	3:+105502802	None:intergenic
TGATCTGCTGCTTCATCAAT+AGG	0.368145	3:+105501286	None:intergenic
TACTATGGACTTGGAATACT+TGG	0.370161	3:-105502705	MsaT017078.1:CDS
CAAGAGCAAATGGGTGATAA+TGG	0.372132	3:-105501500	MsaT017078.1:CDS
CCATCCCAAGAAAATTACTA+TGG	0.379676	3:-105502720	MsaT017078.1:CDS
AGATCTTCATCTTCCATGCT+TGG	0.390757	3:+105502945	None:intergenic
CTCTTTGCACTGGATTGGAT+TGG	0.394071	3:-105501728	MsaT017078.1:CDS
GGGTCCATGCCGAGTTTGTT+GGG	0.400094	3:+105502803	None:intergenic
AAAACGGGAATCTGAATTGC+AGG	0.401372	3:+105502282	None:intergenic
GTTTAATCATTTCGGTTTGA+AGG	0.403646	3:+105500998	None:intergenic
TCAAATTACTAGCAAATCAA+TGG	0.407732	3:-105501071	MsaT017078.1:CDS
TCTTATGTTTACAGATGAAT+TGG	0.410262	3:-105501528	MsaT017078.1:intron
TCGGTTTGGTTCAACAAAAC+GGG	0.413527	3:+105502267	None:intergenic
TTGATTAAGTGCCCGCAGTT+CGG	0.413996	3:+105502248	None:intergenic
TTCGGTTTGGTTCAACAAAA+CGG	0.419751	3:+105502266	None:intergenic
GATTCTAAATTGTAAGCAAA+TGG	0.423137	3:+105502606	None:intergenic
GTAATTTGATCTGCTTCAAA+AGG	0.424097	3:+105501085	None:intergenic
TGAGACTCTTTGCACTGGAT+TGG	0.424222	3:-105501733	MsaT017078.1:CDS
CAAGAAAATTACTATGGACT+TGG	0.426462	3:-105502714	MsaT017078.1:CDS
GATAAATCTGCTAGTGTTGT+TGG	0.428775	3:+105502867	None:intergenic
ACCTTTCTGTGGGGCCATCT+GGG	0.433450	3:+105501205	None:intergenic
GGACCCCACCAAAATCTTCA+TGG	0.435855	3:-105502786	MsaT017078.1:CDS
CCATGATATTCAACAAGGTC+AGG	0.445114	3:-105502523	MsaT017078.1:CDS
ATGAACTACCATCCACTTCA+AGG	0.454887	3:+105502337	None:intergenic
TCATATTGATCTTGAACCAT+TGG	0.458294	3:+105502396	None:intergenic
AAGAAAACTTGTCGTAAAGC+AGG	0.469657	3:-105501232	MsaT017078.1:CDS
CCTGACCTTGTTGAATATCA+TGG	0.476020	3:+105502523	None:intergenic
CACCAAAATCTTCATGGAGT+TGG	0.477847	3:-105502780	MsaT017078.1:CDS
TTATTCATATTGAAGAAACT+TGG	0.478548	3:+105502891	None:intergenic
TAAGTGCCCGCAGTTCGGTT+TGG	0.482116	3:+105502253	None:intergenic
ACTTGTTCTGAGAGGTTCCT+AGG	0.487950	3:+105501473	None:intergenic
AGGCAAGGGCAAGGACTGAA+GGG	0.491007	3:-105501032	MsaT017078.1:CDS
AGCAAATCAATGGGAAGGAC+AGG	0.496313	3:-105501061	MsaT017078.1:CDS
ATTGGTGGAGCAAGAGCAAA+TGG	0.500485	3:-105501510	MsaT017078.1:CDS
CAAATTACTAGCAAATCAAT+GGG	0.500638	3:-105501070	MsaT017078.1:CDS
TATCGCTGCTGCGGCTAAAG+TGG	0.502806	3:+105500925	None:intergenic
TATGTTTACAGATGAATTGG+TGG	0.515772	3:-105501525	MsaT017078.1:intron
AACTGCGGGCACTTAATCAA+TGG	0.515958	3:-105502245	MsaT017078.1:CDS
GAGGCAAGGGCAAGGACTGA+AGG	0.520542	3:-105501033	MsaT017078.1:CDS
TATTCATATTGAAGAAACTT+GGG	0.521262	3:+105502892	None:intergenic
TCAATCATTTGATAAACTGA+TGG	0.522363	3:+105501979	None:intergenic
GTCTCATAAAATTCAGACAT+TGG	0.526543	3:+105501750	None:intergenic
CAATCATTTGATAAACTGAT+GGG	0.528489	3:+105501980	None:intergenic
TTACCACTCTGATTCTGTTG+TGG	0.528506	3:+105502636	None:intergenic
GCTTGAGATTCATGGAAGGT+TGG	0.532570	3:-105502049	MsaT017078.1:CDS
ATTGAAGAAACTTGGGTCAA+CGG	0.535851	3:+105502899	None:intergenic
TGGAATAAATAGCCTTGAAG+TGG	0.539422	3:-105502349	MsaT017078.1:CDS
GTTGAACCAAACCGAACTGC+GGG	0.542214	3:-105502259	MsaT017078.1:CDS
ATAAATCTGCTAGTGTTGTT+GGG	0.542463	3:+105502868	None:intergenic
TATGGACTTGGAATACTTGG+TGG	0.542573	3:-105502702	MsaT017078.1:CDS
CTGCGGCTAAAGTGGCAAGA+AGG	0.552292	3:+105500933	None:intergenic
AGTTTGTTGGGACAGTGCAG+TGG	0.563322	3:+105502815	None:intergenic
ACCCAGATGGCCCCACAGAA+AGG	0.563782	3:-105501206	MsaT017078.1:intron
CCCCATTAACAGGTATCTGA+TGG	0.567348	3:+105502004	None:intergenic
GTAAAGCAGGGTTACCCAGA+TGG	0.568095	3:-105501219	MsaT017078.1:CDS
TGTGTGGAACGTCATTTAGC+AGG	0.571153	3:-105501792	MsaT017078.1:CDS
GTCCATGTTGTTGTACATCA+TGG	0.572620	3:+105502454	None:intergenic
AGAAAACTTGTCGTAAAGCA+GGG	0.586540	3:-105501231	MsaT017078.1:CDS
CGGCTAAAGTGGCAAGAAGG+CGG	0.587716	3:+105500936	None:intergenic
ATAAAATATGAATCCAAGCA+TGG	0.591295	3:-105502958	None:intergenic
ATTCTGTTGTGGCAATACAT+TGG	0.591773	3:+105502647	None:intergenic
CACCATGATGTACAACAACA+TGG	0.591982	3:-105502456	MsaT017078.1:CDS
AGGACAGGATACAGAGGCAA+GGG	0.593438	3:-105501046	MsaT017078.1:CDS
CTGTCCCAACAAACTCGGCA+TGG	0.594201	3:-105502807	MsaT017078.1:CDS
GTTTGTTGGGACAGTGCAGT+GGG	0.598692	3:+105502816	None:intergenic
GATATTCAACAAGGTCAGGA+TGG	0.598749	3:-105502519	MsaT017078.1:CDS
ATAAATAGCCTTGAAGTGGA+TGG	0.603975	3:-105502345	MsaT017078.1:CDS
CTGCACTGTCCCAACAAACT+CGG	0.604462	3:-105502812	MsaT017078.1:CDS
GAAATGATTAAACATTGTGG+TGG	0.607415	3:-105500988	MsaT017078.1:CDS
TGAATATCATGGTAAATGAA+CGG	0.610177	3:+105502534	None:intergenic
ACCGAAATGATTAAACATTG+TGG	0.612061	3:-105500991	MsaT017078.1:CDS
CCATCAGATACCTGTTAATG+GGG	0.617286	3:-105502004	MsaT017078.1:CDS
AAAAGCTTGAGATTCATGGA+AGG	0.617730	3:-105502053	MsaT017078.1:CDS
GGCAAGGGCAAGGACTGAAG+GGG	0.618518	3:-105501031	MsaT017078.1:CDS
TTACTAGCAAATCAATGGGA+AGG	0.619972	3:-105501066	MsaT017078.1:CDS
TGTTGAACCAAACCGAACTG+CGG	0.627319	3:-105502260	MsaT017078.1:CDS
CAACAACATGGACATGGACA+TGG	0.630152	3:-105502444	MsaT017078.1:CDS
CATCATATTCAACAACTGCA+TGG	0.630346	3:-105502570	MsaT017078.1:CDS
AGAGAAATCATACACACTGA+TGG	0.630751	3:-105502177	MsaT017078.1:intron
AAATACGGGGTTACTGTGGG+TGG	0.632071	3:+105502222	None:intergenic
GCGATGTCATACAACGCGGT+TGG	0.634750	3:+105500958	None:intergenic
AGGATACAGAGGCAAGGGCA+AGG	0.638191	3:-105501041	MsaT017078.1:CDS
AAGGACAGGATACAGAGGCA+AGG	0.639471	3:-105501047	MsaT017078.1:CDS
ATTTACCATGATATTCAACA+AGG	0.642604	3:-105502528	MsaT017078.1:CDS
ATATTATTACTTGTTCTGAG+AGG	0.643167	3:+105501465	None:intergenic
GATGTACAACAACATGGACA+TGG	0.659086	3:-105502450	MsaT017078.1:CDS
AATCATTTGATAAACTGATG+GGG	0.687280	3:+105501981	None:intergenic
TTGGTGGAGCAAGAGCAAAT+GGG	0.694143	3:-105501509	MsaT017078.1:CDS
ATGGGAAGGACAGGATACAG+AGG	0.708986	3:-105501052	MsaT017078.1:CDS
TGGGTGATAATGGAACGCCT+AGG	0.709329	3:-105501490	MsaT017078.1:CDS
CATATTCAACAACTGCATGG+TGG	0.712817	3:-105502567	MsaT017078.1:CDS
TTGCCACAACAGAATCAGAG+TGG	0.727563	3:-105502639	MsaT017078.1:CDS
GGCGGCGATGTCATACAACG+CGG	0.812023	3:+105500954	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	105500939	105502973	105500939	ID=MsaG017078
Chr3	mRNA	105500939	105502973	105500939	ID=MsaT017078.1;Parent=MsaG017078
Chr3	exon	105500939	105501115	105500939	ID=MsaT017078.1.exon6;Parent=MsaT017078.1
Chr3	CDS	105500939	105501115	105500939	ID=cds.MsaT017078.1;Parent=MsaT017078.1
Chr3	exon	105501207	105501362	105501207	ID=MsaT017078.1.exon5;Parent=MsaT017078.1
Chr3	CDS	105501207	105501362	105501207	ID=cds.MsaT017078.1;Parent=MsaT017078.1
Chr3	exon	105501475	105501536	105501475	ID=MsaT017078.1.exon4;Parent=MsaT017078.1
Chr3	CDS	105501475	105501536	105501475	ID=cds.MsaT017078.1;Parent=MsaT017078.1
Chr3	exon	105501685	105501863	105501685	ID=MsaT017078.1.exon3;Parent=MsaT017078.1
Chr3	CDS	105501685	105501863	105501685	ID=cds.MsaT017078.1;Parent=MsaT017078.1
Chr3	exon	105501979	105502087	105501979	ID=MsaT017078.1.exon2;Parent=MsaT017078.1
Chr3	CDS	105501979	105502087	105501979	ID=cds.MsaT017078.1;Parent=MsaT017078.1
Chr3	exon	105502178	105502973	105502178	ID=MsaT017078.1.exon1;Parent=MsaT017078.1
Chr3	CDS	105502178	105502973	105502178	ID=cds.MsaT017078.1;Parent=MsaT017078.1

Gene Sequence

>MsaT017078.1

ATGAATCCAAGCATGGAAGATGAAGATCTCATGTTTGACTGCTTCGAAAATTCCGTTGACCCAAGTTTCTTCAATATGAATAACCCAACAACACTAGCAGATTTATCCATTGATAAAAATAACAACAATGTGGGTCCCACTGCACTGTCCCAACAAACTCGGCATGGACCCCACCAAAATCTTCATGGAGTTGGAATAGTTAGTAATTTTAATGATCTTTTTTCCACTCCACCATCCCAAGAAAATTACTATGGACTTGGAATACTTGGTGGTAGTAATAATAATGGAAATGATCCATTTAATTCCAATGTATTGCCACAACAGAATCAGAGTGGTAATAATGATCCATTTGCTTACAATTTAGAATCACCAGAAAATGATCATCATATTCAACAACTGCATGGTGGTAGTAATGATCCGTTCATTTACCATGATATTCAACAAGGTCAGGATGGTAATATTGATTCATTTTCGGATGTTATGTTACAACAAAATCACCATGATGTACAACAACATGGACATGGACATGGTAGTACAAATGAAACATTTTCTGTTCCAATGGTTCAAGATCAATATGATCAAAACAATAATAATTTTTCATTTGGAATAAATAGCCTTGAAGTGGATGGTAGTTCATCACGAATGTATGAGAATCAACAACAAAGTATACCTGCAATTCAGATTCCCGTTTTGTTGAACCAAACCGAACTGCGGGCACTTAATCAATGGCCACCCACAGTAACCCCGTATTTTTGCAGTTGTTGTCAAGTTCTCAGAGAAATCATACACACTGATGGTATGCAATTTGAAAAGCTTGAGATTCATGGAAGGTTGGCGTTGATTACACATGCAATTCACCATCAGATACCTGTTAATGGGGCCCCATCAGTTTATCAAATGATTGATTTTTGTGGGAAAAGCCTTGGTGAAATAAAGAATTTTTTGGCACAGTACTGTGTGGAACGTCATTTAGCAGGATACATTCTTATGCAAGATCCAATGTCTGAATTTTATGAGACTCTTTGCACTGGATTGGATTGGATTGATGATATTAATATGGAGAATCTTATTCAAAATAATTCAGATGAATTGGTGGAGCAAGAGCAAATGGGTGATAATGGAACGCCTAGGAACCTCTCAGAACAAAGGAAAAAATCTGCAAAACTGAAATTGAGTGATTTATGTGATTACTTTCATCTACCTATTGATGAAGCAGCAGATCATGAGAAAGTGAAGTTATGTCCAACAGTTCTCAAGAAAACTTGTCGTAAAGCAGGGTTACCCAGATGGCCCCACAGAAAGGTGAAAAGCCTTTTGAAGCAGATCAAATTACTAGCAAATCAATGGGAAGGACAGGATACAGAGGCAAGGGCAAGGACTGAAGGGGAAATTAAAAGCCTTCAAACCGAAATGATTAAACATTGTGGTGGACATATACCAACCGCGTTGTATGACATCGCCGCCTTCTTGCCACTTTAG

Protein sequence

>MsaT017078.1

MNPSMEDEDLMFDCFENSVDPSFFNMNNPTTLADLSIDKNNNNVGPTALSQQTRHGPHQNLHGVGIVSNFNDLFSTPPSQENYYGLGILGGSNNNGNDPFNSNVLPQQNQSGNNDPFAYNLESPENDHHIQQLHGGSNDPFIYHDIQQGQDGNIDSFSDVMLQQNHHDVQQHGHGHGSTNETFSVPMVQDQYDQNNNNFSFGINSLEVDGSSSRMYENQQQSIPAIQIPVLLNQTELRALNQWPPTVTPYFCSCCQVLREIIHTDGMQFEKLEIHGRLALITHAIHHQIPVNGAPSVYQMIDFCGKSLGEIKNFLAQYCVERHLAGYILMQDPMSEFYETLCTGLDWIDDINMENLIQNNSDELVEQEQMGDNGTPRNLSEQRKKSAKLKLSDLCDYFHLPIDEAADHEKVKLCPTVLKKTCRKAGLPRWPHRKVKSLLKQIKLLANQWEGQDTEARARTEGEIKSLQTEMIKHCGGHIPTALYDIAAFLPL*