AlfalfaGEDB | MsaG017107

M. sativa ssp. caerulea / MsaG017107

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017107	XP_003603231.1	98.958	384	4	0	1	384	1	384	0.0	784

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017107	sp\|Q9ZUF4\|RIPK_ARATH	66.929	381	115	5	4	377	5	381	0.0	520

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017107	tr\|G7J941\|G7J941_MEDTR	98.958	384	4	0	1	384	1	384	0.0	784

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG017107	0.837996	6.866330e-57	2.517938e-54
MsaG000023	MsaG017107	0.830687	4.596157e-55	1.356486e-52
MsaG000216	MsaG017107	0.805583	2.105568e-49	3.235669e-47
MsaG000219	MsaG017107	0.809919	2.548727e-50	4.343975e-48
MsaG000234	MsaG017107	0.856269	6.999208e-62	4.735332e-59
MsaG000364	MsaG017107	0.849031	7.964879e-60	4.176501e-57
MsaG000379	MsaG017107	0.898119	1.652844e-76	7.581520e-73
MsaG000413	MsaG017107	0.854363	2.494974e-61	1.575808e-58
MsaG000472	MsaG017107	0.822663	3.701698e-53	8.738978e-51
MsaG000479	MsaG017107	0.802199	1.055097e-48	1.499348e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017107	MtrunA17_Chr3g0136421	98.958	384	4	0	1	384	1	384	0.0	784
MsaG017107	MtrunA17_Chr1g0150741	82.461	382	64	3	2	382	3	382	0.0	638
MsaG017107	MtrunA17_Chr4g0070411	68.380	389	110	5	5	384	2	386	0.0	541
MsaG017107	MtrunA17_Chr2g0300711	66.845	374	121	3	5	377	2	373	0.0	519
MsaG017107	MtrunA17_Chr8g0344141	65.699	379	124	5	1	378	1	374	8.85e-167	475
MsaG017107	MtrunA17_Chr5g0408941	59.838	371	145	4	1	371	13	379	1.39e-155	444
MsaG017107	MtrunA17_Chr7g0245571	63.077	325	118	2	41	364	49	372	1.99e-146	422
MsaG017107	MtrunA17_Chr8g0380441	61.329	331	125	3	44	372	33	362	4.97e-142	409
MsaG017107	MtrunA17_Chr7g0216551	60.180	334	125	4	50	379	94	423	2.10e-139	405
MsaG017107	MtrunA17_Chr8g0388941	61.613	310	118	1	55	364	44	352	8.59e-139	400

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017107	AT2G05940.1	66.929	381	115	5	4	377	5	381	0.0	520
MsaG017107	AT2G26290.1	69.167	360	105	3	13	367	14	372	6.17e-180	507
MsaG017107	AT5G35580.2	62.141	383	132	5	4	377	5	383	2.41e-168	480
MsaG017107	AT5G35580.1	65.537	354	119	3	25	377	20	371	5.15e-166	474
MsaG017107	AT1G72540.1	55.875	383	155	6	5	378	2	379	2.91e-151	435
MsaG017107	AT5G01020.1	63.444	331	119	2	41	371	29	357	2.92e-150	431
MsaG017107	AT1G61590.1	61.310	336	127	3	36	371	55	387	1.48e-148	427
MsaG017107	AT2G07180.1	60.000	315	125	1	55	369	63	376	7.79e-137	398
MsaG017107	AT2G07180.2	60.000	315	125	1	55	369	63	376	7.79e-137	398
MsaG017107	AT5G15080.1	61.677	334	119	5	40	369	103	431	1.35e-136	399

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Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGGTTCTTTCCAAA+GGG	0.491960	3:+105810946	MsaT017107.1:CDS
AAAATCTTTGGAATCACTTC+AGG	0.326494	3:+105812472	MsaT017107.1:CDS
AAACATCACTCTTGGTAGAA+AGG	0.467637	3:-105812199	None:intergenic
AAATAGGGAGAGAAACCTAG+TGG	0.671872	3:+105812286	MsaT017107.1:CDS
AAGAGTGATGTTTATAGCTA+TGG	0.456091	3:+105812209	MsaT017107.1:CDS
AAGGCCTAATATGAGTGATG+TGG	0.658982	3:+105812448	MsaT017107.1:CDS
AAGTCTATTGTCTTGATCTT+AGG	0.278201	3:+105810875	MsaT017107.1:CDS
AATCTTGGGTCTATGATATG+AGG	0.521480	3:-105812347	None:intergenic
AATTGCATTAGGTGCAGCTA+AGG	0.490148	3:+105811721	MsaT017107.1:CDS
AATTGGATACTGCTGTGAGG+AGG	0.656182	3:+105811493	MsaT017107.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	105810851	105812556	105810851	ID=MsaG017107
Chr3	mRNA	105810851	105812556	105810851	ID=MsaT017107.1;Parent=MsaG017107
Chr3	exon	105810851	105811243	105810851	ID=MsaT017107.1.exon1;Parent=MsaT017107.1
Chr3	CDS	105810851	105811243	105810851	ID=cds.MsaT017107.1;Parent=MsaT017107.1
Chr3	exon	105811443	105811578	105811443	ID=MsaT017107.1.exon2;Parent=MsaT017107.1
Chr3	CDS	105811443	105811578	105811443	ID=cds.MsaT017107.1;Parent=MsaT017107.1
Chr3	exon	105811684	105811820	105811684	ID=MsaT017107.1.exon3;Parent=MsaT017107.1
Chr3	CDS	105811684	105811820	105811684	ID=cds.MsaT017107.1;Parent=MsaT017107.1
Chr3	exon	105811904	105812030	105811904	ID=MsaT017107.1.exon4;Parent=MsaT017107.1
Chr3	CDS	105811904	105812030	105811904	ID=cds.MsaT017107.1;Parent=MsaT017107.1
Chr3	exon	105812195	105812556	105812195	ID=MsaT017107.1.exon5;Parent=MsaT017107.1
Chr3	CDS	105812195	105812556	105812195	ID=cds.MsaT017107.1;Parent=MsaT017107.1

Gene Sequence

>MsaT017107.1

ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTCTTGATCTTAGGTTGTTACAAGACAAAATACTCATTAGAAGAACCAGAAAAAAAGGTTTTAAAACAAGGTTCTTTCCAAAGGGTAAGCCTATCTGATATAAGCATTTCTAGCTCTACTACTCAAGCTATTGAGGATCTTTCCATTTCACTAGCTGGTTCAAAGCTTTACACATTTACACTAGAAGAGCTAAGAGAAGCAACACATAATTTTTCAAGGAGTAATTTGCTAGGTGAAGGTGGTTTTGGACCTGTGTATAAGGGTTTTGTTGATGATAAACTCAGACATGGTTTGAAGGCTCAATCTATTGCTGTGAAACGACTCAACTTGGATGGCTCACAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTTAGACATCCACATCTTGTCAAGCTAATTGGATACTGCTGTGAGGAGGAGCAGAGGCTTTTGGTGTATGAATACATGACAAGAGGGAGCTTGGAGAATCAATTGTTCAGAAGATACTCTGCTACATTACCATGGTCAACCAGAATGAAAATTGCATTAGGTGCAGCTAAGGGACTAGCTTTCCTTCATGAAGCAGATAAACCTGTAATCTATAGGGATTTCAAAACTTCAAATATATTACTGGACTCGGATTACACAGCTAAACTATCTGACCTTGGATTAGCTAAAGATGGTCCTGAAGGAGAAGAAACACATGTGACAACAACATGCATAATGGGAACAAAAGGCTATGCTGCTCCTGAGTATATCATGTCAGGTCACCTTTCTACCAAGAGTGATGTTTATAGCTATGGAGTAGTGTTGTTGGAATTGCTTACAGGAAAGAGGGTAGTGGATAAAAGCAGATCAAATAGGGAGAGAAACCTAGTGGAATGGGCTAGACCTATTTTGAGAGATCAAAGAAAGCTTCCTCATATCATAGACCCAAGATTAGAGGGACAGTTTCCTATTAAAGGAGCATTGAAGGTTGCTGCATTGACTTATAAATGTTTGAGCCACCATCCTAATCCAAGGCCTAATATGAGTGATGTGGTAAAATCTTTGGAATCACTTCAGGACTTTGATGATGTGTTCATAGGACCATTTGTGTATGTGGCTGTTAGTGAAAGTAGCCAATGA

Protein sequence

>MsaT017107.1

MSSKKITWKSIVLILGCYKTKYSLEEPEKKVLKQGSFQRVSLSDISISSSTTQAIEDLSISLAGSKLYTFTLEELREATHNFSRSNLLGEGGFGPVYKGFVDDKLRHGLKAQSIAVKRLNLDGSQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEQRLLVYEYMTRGSLENQLFRRYSATLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEETHVTTTCIMGTKGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGKRVVDKSRSNRERNLVEWARPILRDQRKLPHIIDPRLEGQFPIKGALKVAALTYKCLSHHPNPRPNMSDVVKSLESLQDFDDVFIGPFVYVAVSESSQ*