AlfalfaGEDB | MsaG017134

M. sativa ssp. caerulea / MsaG017134

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00643.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017134	XP_003603265.1	97.586	290	7	0	1	290	1	290	0.0	590

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017134	sp\|Q940T9\|COL4_ARATH	52.000	375	80	13	1	289	1	361	6.54e-94	285

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017134	tr\|G7JPB9\|G7JPB9_MEDTR	97.586	290	7	0	1	290	1	290	0.0	590

TFs/TRs:

Gene ID	Type	Classification
MsaG017134	TF	C2C2-CO-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000047	MsaG017134	0.802300	1.005649e-48	1.432460e-46
MsaG000202	MsaG017134	0.835277	3.358503e-56	1.134314e-53
MsaG000416	MsaG017134	0.846495	3.944404e-59	1.899103e-56
MsaG000488	MsaG017134	0.843077	3.260017e-58	1.403310e-55
MsaG000493	MsaG017134	0.805440	2.255704e-49	3.454879e-47
MsaG000607	MsaG017134	0.800357	2.502528e-48	3.411011e-46
MsaG001601	MsaG017134	0.804514	3.515704e-49	5.270186e-47
MsaG001767	MsaG017134	0.819980	1.529385e-52	3.361932e-50
MsaG003309	MsaG017134	0.875226	7.546417e-68	1.096074e-64
MsaG003806	MsaG017134	0.836325	1.828209e-56	6.372374e-54
MsaG004025	MsaG017134	0.800478	2.365409e-48	3.232911e-46
MsaG004031	MsaG017134	0.801054	1.807216e-48	2.502175e-46
MsaG004165	MsaG017134	0.827108	3.346462e-54	8.925338e-52
MsaG004191	MsaG017134	0.813949	3.408708e-51	6.417672e-49
MsaG004377	MsaG017134	0.809012	3.982579e-50	6.640923e-48
MsaG004348	MsaG017134	0.830061	6.526913e-55	1.892223e-52
MsaG004433	MsaG017134	0.823713	2.111601e-53	5.128990e-51
MsaG004404	MsaG017134	0.837880	7.350853e-57	2.685954e-54
MsaG004413	MsaG017134	0.805644	2.044501e-49	3.146425e-47
MsaG004710	MsaG017134	0.802321	9.960905e-49	1.419532e-46
MsaG005211	MsaG017134	0.819988	1.523069e-52	3.348742e-50
MsaG005424	MsaG017134	0.802101	1.104984e-48	1.566716e-46
MsaG005665	MsaG017134	0.802775	8.034279e-49	1.156888e-46
MsaG006277	MsaG017134	0.826434	4.840511e-54	1.267030e-51
MsaG006281	MsaG017134	0.817822	4.706678e-52	9.779026e-50
MsaG006284	MsaG017134	0.829736	7.822920e-55	2.246959e-52
MsaG006355	MsaG017134	0.829968	6.871838e-55	1.987018e-52
MsaG006426	MsaG017134	0.805883	1.822520e-49	2.820560e-47
MsaG007516	MsaG017134	0.806201	1.563373e-49	2.437832e-47
MsaG007576	MsaG017134	0.821024	8.830592e-53	1.995619e-50
MsaG007949	MsaG017134	0.805353	2.351816e-49	3.594861e-47
MsaG007970	MsaG017134	0.825445	8.289990e-54	2.111051e-51
MsaG007971	MsaG017134	0.806816	1.161128e-49	1.836981e-47
MsaG008537	MsaG017134	0.816151	1.111824e-51	2.212969e-49
MsaG009348	MsaG017134	0.841107	1.076099e-57	4.349725e-55
MsaG009478	MsaG017134	0.803319	6.209528e-49	9.054383e-47
MsaG009874	MsaG017134	0.822992	3.105718e-53	7.397496e-51
MsaG009900	MsaG017134	0.820496	1.166318e-52	2.599074e-50
MsaG010113	MsaG017134	0.822003	5.261507e-53	1.220264e-50
MsaG010567	MsaG017134	0.811171	1.371289e-50	2.409698e-48
MsaG010918	MsaG017134	0.801063	1.799127e-48	2.491526e-46
MsaG011690	MsaG017134	0.820197	1.364764e-52	3.017500e-50
MsaG012125	MsaG017134	0.838414	5.364363e-57	1.992752e-54
MsaG012161	MsaG017134	0.803943	4.616166e-49	6.828933e-47
MsaG012396	MsaG017134	0.802862	7.710720e-49	1.112517e-46
MsaG012488	MsaG017134	0.801070	1.793746e-48	2.484446e-46
MsaG012887	MsaG017134	0.803120	6.824220e-49	9.905141e-47
MsaG013222	MsaG017134	0.813718	3.830570e-51	7.170003e-49
MsaG013844	MsaG017134	0.815288	1.727678e-51	3.364213e-49
MsaG013968	MsaG017134	0.810594	1.825789e-50	3.163386e-48
MsaG014547	MsaG017134	0.815487	1.561069e-51	3.055042e-49
MsaG014718	MsaG017134	0.817664	5.105797e-52	1.056479e-49
MsaG016573	MsaG017134	0.809857	2.628154e-50	4.472663e-48
MsaG016976	MsaG017134	0.854034	3.102325e-61	1.936324e-58
MsaG017020	MsaG017134	0.839109	3.553923e-57	1.349204e-54
MsaG017134	MsaG017243	0.805905	1.803254e-49	2.792158e-47
MsaG017134	MsaG017399	0.811791	1.006874e-50	1.796430e-48
MsaG017134	MsaG017541	0.811333	1.264851e-50	2.231531e-48
MsaG017134	MsaG017572	0.823938	1.871416e-53	4.573117e-51
MsaG017134	MsaG017705	0.802116	1.097079e-48	1.556050e-46
MsaG017134	MsaG018034	0.804230	4.025567e-49	5.995143e-47
MsaG017134	MsaG018084	0.811631	1.090708e-50	1.938349e-48
MsaG017134	MsaG018167	0.820437	1.202922e-52	2.676567e-50
MsaG017134	MsaG018437	0.821377	7.328944e-53	1.671714e-50
MsaG017134	MsaG018552	0.835789	2.496979e-56	8.563756e-54
MsaG017134	MsaG018755	0.800636	2.196700e-48	3.013160e-46
MsaG017134	MsaG019437	0.841985	6.333831e-58	2.632732e-55
MsaG017134	MsaG020157	0.837211	1.089314e-56	3.899674e-54
MsaG017134	MsaG020255	0.817095	6.849107e-52	1.396656e-49
MsaG017134	MsaG020403	0.805616	2.072424e-49	3.187270e-47
MsaG017134	MsaG020470	0.808931	4.143084e-50	6.895246e-48
MsaG017134	MsaG020499	0.816222	1.072482e-51	2.138479e-49
MsaG017134	MsaG020576	0.816537	9.124164e-52	1.833990e-49
MsaG017134	MsaG020798	0.823781	2.035260e-53	4.952682e-51
MsaG017134	MsaG021042	0.828313	1.724036e-54	4.756167e-52
MsaG017134	MsaG021339	0.817400	5.853185e-52	1.202961e-49
MsaG017134	MsaG021344	0.845211	8.773388e-59	4.048004e-56
MsaG017134	MsaG021433	0.811705	1.051242e-50	1.871634e-48
MsaG017134	MsaG021438	0.809372	3.336762e-50	5.612372e-48
MsaG017134	MsaG021956	0.823990	1.819463e-53	4.452536e-51
MsaG017134	MsaG022363	0.800924	1.919914e-48	2.650527e-46
MsaG017134	MsaG023325	0.823911	1.898591e-53	4.636192e-51
MsaG017134	MsaG023554	0.841361	9.235205e-58	3.763045e-55
MsaG017134	MsaG023522	0.802357	9.789973e-49	1.396341e-46
MsaG017134	MsaG024735	0.803641	5.329977e-49	7.829657e-47
MsaG017134	MsaG026696	0.830740	4.460456e-55	1.318462e-52
MsaG017134	MsaG027021	0.813692	3.880268e-51	7.258372e-49
MsaG017134	MsaG027757	0.801752	1.302220e-48	1.831825e-46
MsaG017134	MsaG027911	0.816869	7.691379e-52	1.559281e-49
MsaG017134	MsaG028511	0.800662	2.170627e-48	2.979113e-46
MsaG017134	MsaG028917	0.823548	2.307406e-53	5.579220e-51
MsaG017134	MsaG029377	0.806255	1.523114e-49	2.378112e-47
MsaG017134	MsaG029469	0.809044	3.920658e-50	6.542744e-48
MsaG017134	MsaG030031	0.804305	3.884493e-49	5.795096e-47
MsaG017134	MsaG030094	0.805219	2.508533e-49	3.822460e-47
MsaG017134	MsaG030215	0.812075	8.737639e-51	1.569811e-48
MsaG017134	MsaG030371	0.840840	1.263537e-57	5.064229e-55
MsaG017134	MsaG030760	0.801973	1.173576e-48	1.659181e-46
MsaG017134	MsaG030830	0.818896	2.695022e-52	5.757390e-50
MsaG017134	MsaG031125	0.819197	2.303592e-52	4.960464e-50
MsaG017134	MsaG031706	0.829565	8.605866e-55	2.459802e-52
MsaG017134	MsaG032712	0.819867	1.622747e-52	3.556349e-50
MsaG017134	MsaG033289	0.818216	3.837267e-52	8.054069e-50
MsaG017134	MsaG034379	0.810570	1.847638e-50	3.199386e-48
MsaG017134	MsaG034733	0.811994	9.100402e-51	1.631774e-48
MsaG017134	MsaG035157	0.826941	3.667057e-54	9.734889e-52
MsaG017134	MsaG035656	0.819857	1.631326e-52	3.574133e-50
MsaG017134	MsaG035678	0.822725	3.581440e-53	8.469490e-51
MsaG017134	MsaG036049	0.808581	4.917698e-50	8.115584e-48
MsaG017134	MsaG036121	0.815414	1.620368e-51	3.165328e-49
MsaG017134	MsaG036331	0.814617	2.430901e-51	4.653800e-49
MsaG017134	MsaG036658	0.805247	2.474803e-49	3.773526e-47
MsaG017134	MsaG037924	0.853218	5.309426e-61	3.219122e-58
MsaG017134	MsaG037969	0.804550	3.454307e-49	5.182596e-47
MsaG017134	MsaG038993	0.855790	9.647969e-62	6.413268e-59
MsaG017134	MsaG039975	0.802438	9.424987e-49	1.346739e-46
MsaG017134	MsaG039983	0.817830	4.686176e-52	9.738413e-50
MsaG017134	MsaG040261	0.800064	2.869786e-48	3.885745e-46
MsaG017134	MsaG040351	0.805800	1.896857e-49	2.929824e-47
MsaG017134	MsaG040685	0.827093	3.375476e-54	8.998823e-52
MsaG017134	MsaG040895	0.825523	7.948186e-54	2.028448e-51
MsaG017134	MsaG041581	0.809876	2.603680e-50	4.432964e-48
MsaG017134	MsaG041704	0.839707	2.490106e-57	9.631816e-55
MsaG017134	MsaG041898	0.844588	1.289616e-58	5.829722e-56
MsaG017134	MsaG042509	0.834106	6.596984e-56	2.151365e-53
MsaG017134	MsaG042623	0.834241	6.106797e-56	1.999574e-53
MsaG017134	MsaG042654	0.844667	1.228468e-58	5.567932e-56
MsaG017134	MsaG042932	0.804686	3.237476e-49	4.872487e-47
MsaG017134	MsaG043740	0.829556	8.649297e-55	2.471605e-52
MsaG017134	MsaG044093	0.840740	1.341530e-57	5.360056e-55
MsaG017134	MsaG044228	0.806363	1.446164e-49	2.263663e-47
MsaG017134	MsaG044267	0.806717	1.218378e-49	1.923114e-47
MsaG017134	MsaG044932	0.873625	2.620697e-67	3.547744e-64
MsaG017134	MsaG045534	0.827574	2.591502e-54	7.002713e-52
MsaG017134	MsaG045877	0.812733	6.285659e-51	1.147919e-48
MsaG017134	MsaG045878	0.820328	1.273971e-52	2.826498e-50
MsaG017134	MsaG045923	0.803123	6.815094e-49	9.892553e-47
MsaG017134	MsaG046755	0.800170	2.730792e-48	3.706304e-46
MsaG017134	MsaG046929	0.805965	1.751765e-49	2.716250e-47
MsaG017134	MsaG047003	0.823861	1.950098e-53	4.755495e-51
MsaG017134	MsaG047181	0.803133	6.783872e-49	9.849432e-47
MsaG017134	MsaG005823	0.842153	5.718442e-58	2.389577e-55
MsaG017134	MsaG001341	0.801978	1.170551e-48	1.655108e-46
MsaG017134	MsaG007676	0.826503	4.661527e-54	1.222508e-51
MsaG017134	MsaG008384	0.835543	2.879291e-56	9.802878e-54
MsaG017134	MsaG010542	0.805314	2.396148e-49	3.659261e-47
MsaG017134	MsaG006009	0.846951	2.964306e-59	1.449207e-56
MsaG017134	MsaG013381	0.808738	4.553716e-50	7.543773e-48
MsaG017134	MsaG013302	0.804316	3.864454e-49	5.766545e-47
MsaG017134	MsaG014915	0.805972	1.746447e-49	2.708406e-47
MsaG017134	MsaG012731	0.808397	5.382420e-50	8.842885e-48
MsaG017134	MsaG019774	0.841891	6.704176e-58	2.778438e-55
MsaG017134	MsaG020180	0.838436	5.295365e-57	1.968495e-54
MsaG017134	MsaG020996	0.808640	4.778424e-50	7.896895e-48
MsaG017134	MsaG018137	0.819739	1.735602e-52	3.790648e-50
MsaG017134	MsaG019535	0.824854	1.141772e-53	2.860743e-51
MsaG017134	MsaG029796	0.802752	8.123441e-49	1.169123e-46
MsaG017134	MsaG028156	0.831286	3.280044e-55	9.849246e-53
MsaG017134	MsaG031534	0.806419	1.407282e-49	2.205794e-47
MsaG017134	MsaG030574	0.818457	3.385350e-52	7.149878e-50
MsaG017134	MsaG036290	0.838974	3.851426e-57	1.456053e-54
MsaG017134	MsaG039133	0.801262	1.639071e-48	2.280112e-46
MsaG017134	MsaG036541	0.805544	2.145540e-49	3.294037e-47
MsaG017134	MsaG036398	0.809116	3.783014e-50	6.324131e-48
MsaG017134	MsaG036208	0.823975	1.834519e-53	4.487519e-51
MsaG017134	MsaG036860	0.864017	3.275263e-64	2.975360e-61
MsaG017134	MsaG042302	0.812712	6.353218e-51	1.159648e-48
MsaG017134	MsaG047198	0.825503	8.033314e-54	2.048975e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017134	MtrunA17_Chr3g0136701	97.586	290	7	0	1	290	1	290	0.0	590
MsaG017134	MtrunA17_Chr1g0150471	54.403	318	115	7	1	290	1	316	3.82e-106	311
MsaG017134	MtrunA17_Chr4g0072871	51.205	332	101	11	4	280	20	345	4.65e-89	270
MsaG017134	MtrunA17_Chr7g0220721	63.043	92	34	0	3	94	23	114	1.31e-37	137
MsaG017134	MtrunA17_Chr7g0220721	71.429	70	9	2	231	289	326	395	4.99e-23	97.4
MsaG017134	MtrunA17_Chr5g0405151	50.602	83	33	1	5	79	4	86	1.06e-20	87.4
MsaG017134	MtrunA17_Chr5g0429341	43.333	90	51	0	5	94	4	93	2.51e-19	87.4
MsaG017134	MtrunA17_Chr1g0155811	43.299	97	45	1	6	92	5	101	4.99e-19	84.7
MsaG017134	MtrunA17_Chr2g0314671	44.792	96	44	1	6	92	5	100	1.08e-18	84.0
MsaG017134	MtrunA17_Chr4g0033641	43.750	96	45	1	6	92	5	100	1.10e-18	83.2
MsaG017134	MtrunA17_Chr2g0329511	42.708	96	46	1	6	92	5	100	1.56e-17	80.1
MsaG017134	MtrunA17_Chr4g0035651	39.175	97	49	1	6	92	5	101	5.64e-17	78.2
MsaG017134	MtrunA17_Chr3g0145061	38.144	97	50	1	6	92	5	101	6.44e-17	78.2
MsaG017134	MtrunA17_Chr7g0268691	39.326	89	53	1	6	94	20	107	3.01e-16	78.2
MsaG017134	MtrunA17_Chr3g0120711	39.216	102	61	1	5	106	4	104	3.82e-16	78.2
MsaG017134	MtrunA17_Chr3g0120711	44.872	78	40	1	202	279	327	401	3.16e-11	63.5
MsaG017134	MtrunA17_Chr2g0322941	45.122	82	45	0	5	86	43	124	3.12e-15	73.6
MsaG017134	MtrunA17_Chr3g0142221	37.895	95	48	1	6	89	5	99	8.82e-15	72.0
MsaG017134	MtrunA17_Chr7g0251781	44.444	72	40	0	6	77	5	76	1.33e-13	70.5
MsaG017134	MtrunA17_Chr2g0322951	38.318	107	46	2	189	279	37	139	1.25e-12	64.3
MsaG017134	MtrunA17_Chr1g0209071	39.189	74	45	0	4	77	3	76	1.53e-12	67.0
MsaG017134	MtrunA17_Chr1g0209861	61.818	55	17	1	224	274	370	424	3.06e-12	66.6
MsaG017134	MtrunA17_Chr8g0390971	70.455	44	13	0	232	275	358	401	4.87e-12	65.9
MsaG017134	MtrunA17_Chr5g0431351	66.667	45	15	0	230	274	172	216	7.14e-12	63.5
MsaG017134	MtrunA17_Chr3g0127941	49.231	65	32	1	219	283	617	680	7.36e-12	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG017134	AT5G24930.1	52.000	375	80	13	1	289	1	361	6.65e-95	285
MsaG017134	AT2G24790.1	54.266	293	95	11	2	277	4	274	4.73e-94	280
MsaG017134	AT5G57660.1	42.775	346	131	10	2	289	18	354	2.34e-74	232
MsaG017134	AT3G02380.1	40.351	342	141	9	3	289	13	346	4.42e-73	228
MsaG017134	AT5G15850.1	41.210	347	143	8	3	289	9	354	5.84e-70	220
MsaG017134	AT5G15840.1	39.335	361	134	14	6	289	20	372	1.29e-65	210
MsaG017134	AT2G24790.2	56.180	178	55	6	2	171	4	166	8.17e-58	185
MsaG017134	AT5G15840.2	41.935	186	82	7	6	166	20	204	2.12e-37	134
MsaG017134	AT1G49130.1	28.435	313	176	10	4	280	26	326	1.65e-22	95.5
MsaG017134	AT1G49130.2	28.435	313	176	10	4	280	19	319	1.85e-22	95.5
MsaG017134	AT4G38960.1	35.570	149	74	3	5	138	4	145	3.41e-20	86.3
MsaG017134	AT4G38960.6	35.570	149	74	3	5	138	4	145	3.41e-20	86.3
MsaG017134	AT2G21320.1	49.398	83	34	1	5	79	4	86	6.48e-20	85.1
MsaG017134	AT1G78600.2	42.017	119	56	3	6	111	5	123	4.97e-19	85.9
MsaG017134	AT1G78600.1	42.017	119	56	3	6	111	5	123	5.28e-19	85.5
MsaG017134	AT2G47890.3	42.857	91	50	1	4	94	11	99	4.59e-18	82.8
MsaG017134	AT2G47890.1	42.857	91	50	1	4	94	11	99	5.13e-18	83.2
MsaG017134	AT2G47890.1	27.273	308	161	14	3	276	53	331	1.35e-13	70.5
MsaG017134	AT2G47890.2	42.857	91	50	1	4	94	11	99	6.31e-18	81.3
MsaG017134	AT1G06040.1	43.750	96	45	1	6	92	5	100	7.36e-18	81.3
MsaG017134	AT1G06040.2	43.750	96	45	1	6	92	5	100	1.01e-17	79.3
MsaG017134	AT1G75540.1	40.404	99	47	1	6	92	5	103	1.17e-17	82.0
MsaG017134	AT2G33500.1	42.697	89	51	0	6	94	12	100	3.25e-17	81.6
MsaG017134	AT2G33500.1	52.632	57	27	0	220	276	345	401	1.09e-12	68.2
MsaG017134	AT2G33500.2	42.697	89	51	0	6	94	12	100	3.26e-17	81.6
MsaG017134	AT2G33500.2	52.632	57	27	0	220	276	344	400	1.12e-12	68.2
MsaG017134	AT2G31380.1	34.177	158	87	4	6	153	5	155	1.44e-16	77.8
MsaG017134	AT1G28050.1	41.573	89	52	0	6	94	9	97	4.62e-16	78.2
MsaG017134	AT1G28050.1	56.000	50	22	0	228	277	381	430	9.23e-11	62.4
MsaG017134	AT5G48250.1	38.043	92	55	1	5	94	4	95	1.11e-14	73.9
MsaG017134	AT3G07650.3	45.205	73	40	0	5	77	4	76	3.37e-14	72.4
MsaG017134	AT3G07650.3	35.185	108	65	2	174	279	258	362	8.73e-11	62.4
MsaG017134	AT3G07650.2	45.205	73	40	0	5	77	4	76	3.37e-14	72.4
MsaG017134	AT3G07650.2	35.185	108	65	2	174	279	258	362	8.73e-11	62.4
MsaG017134	AT3G07650.4	45.205	73	40	0	5	77	4	76	3.37e-14	72.4
MsaG017134	AT3G07650.4	35.185	108	65	2	174	279	258	362	8.73e-11	62.4
MsaG017134	AT3G07650.1	45.205	73	40	0	5	77	4	76	3.37e-14	72.4
MsaG017134	AT3G07650.1	35.185	108	65	2	174	279	258	362	8.73e-11	62.4
MsaG017134	AT4G10240.1	33.714	175	81	7	6	165	5	159	4.33e-14	68.9
MsaG017134	AT4G39070.1	37.755	98	51	1	5	92	4	101	1.71e-13	68.9
MsaG017134	AT1G73870.1	55.556	63	27	1	213	275	327	388	2.52e-13	70.1
MsaG017134	AT4G15250.1	40.476	84	50	0	6	89	5	88	4.70e-13	68.9
MsaG017134	AT1G68190.2	38.824	85	50	1	4	88	41	123	6.48e-13	68.9
MsaG017134	AT1G68190.1	38.824	85	50	1	4	88	12	94	7.72e-13	68.6
MsaG017134	AT1G68190.3	38.824	85	50	1	4	88	12	94	7.72e-13	68.6
MsaG017134	AT1G25440.1	36.029	136	72	5	158	286	288	415	4.88e-12	66.2
MsaG017134	AT3G21880.1	38.202	89	53	1	6	94	5	91	1.29e-11	64.7
MsaG017134	AT3G21880.3	38.202	89	53	1	6	94	9	95	1.41e-11	64.7
MsaG017134	AT3G21880.2	38.202	89	53	1	6	94	9	95	1.41e-11	64.7
MsaG017134	AT5G14370.1	63.043	46	17	0	232	277	294	339	1.94e-11	64.3
MsaG017134	AT4G25990.1	60.870	46	18	0	232	277	341	386	2.43e-11	63.9
MsaG017134	AT1G68520.1	68.182	44	14	0	232	275	357	400	2.60e-11	63.9
MsaG017134	AT5G60100.2	31.217	189	106	6	95	276	342	513	2.99e-11	63.9
MsaG017134	AT5G60100.5	31.217	189	106	6	95	276	315	486	3.42e-11	63.9
MsaG017134	AT5G60100.3	31.217	189	106	6	95	276	315	486	3.42e-11	63.9
MsaG017134	AT5G60100.1	31.217	189	106	6	95	276	315	486	3.42e-11	63.9

Find 71 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATGCAGTTGATTCCATTTC+TGG	0.107062	3:+106077231	MsaT017134.1:CDS
GAAACTAGGCCTAGGATTAA+AGG	0.280004	3:+106077189	MsaT017134.1:CDS
CCGCAGAGGAAGGCGGAGTC+AGG	0.296878	3:-106076357	None:intergenic
TTCCGAAGCTATTCCGTTCA+TGG	0.298068	3:+106076728	MsaT017134.1:CDS
AAGCTAGGGTTATGAGGTAT+AGG	0.350898	3:+106077103	MsaT017134.1:CDS
GACGGTGTTGTTCCCGTTCA+TGG	0.369225	3:+106076783	MsaT017134.1:CDS
GCAAACCTCCCTTTAATCCT+AGG	0.392261	3:-106077198	None:intergenic
CCGTTCATGGATCTCGATTA+CGG	0.395344	3:+106076741	MsaT017134.1:CDS
TTTGTTAGCGGCGTGGACTT+TGG	0.416071	3:-106076391	None:intergenic
GGATCGAAGTTGCCATGAAC+GGG	0.430806	3:-106076795	None:intergenic
TGGCGGCGGATCGTGAAGCT+AGG	0.432649	3:+106077088	MsaT017134.1:CDS
GATTCGAAGAACGGAGTAAC+GGG	0.439450	3:-106076567	None:intergenic
AGCTAGGGTTATGAGGTATA+GGG	0.439658	3:+106077104	MsaT017134.1:CDS
AGATATCGAACTGTGGTTAC+GGG	0.444139	3:+106077061	MsaT017134.1:CDS
GAGATATCGAACTGTGGTTA+CGG	0.445942	3:+106077060	MsaT017134.1:CDS
AACGATGCCGTATCCAGAAA+TGG	0.448783	3:-106077244	None:intergenic
GTTGATTCCATTTCTGGATA+CGG	0.451790	3:+106077237	MsaT017134.1:CDS
GATGAGTTGAGATCTGCTTT+CGG	0.461772	3:-106076687	None:intergenic
TCCGACACGGTGTTCCCGTC+AGG	0.479338	3:-106077039	None:intergenic
TTTAACAGAGTGAGAAGTGT+TGG	0.480554	3:-106076589	None:intergenic
TGGTTACGGGACGGTGGCGG+CGG	0.488159	3:+106077074	MsaT017134.1:CDS
AAACTAGGCCTAGGATTAAA+GGG	0.490422	3:+106077190	MsaT017134.1:CDS
AGTGTGGATGTCACGGTCAC+AGG	0.492186	3:-106076511	None:intergenic
ATCCATGAACGGAATAGCTT+CGG	0.492715	3:-106076730	None:intergenic
TTATGAGGTATAGGGAGAAG+AGG	0.496368	3:+106077112	MsaT017134.1:CDS
TTCTTGTAAGCTGAAACAAA+TGG	0.496560	3:-106076816	None:intergenic
TTAGGTATCGTCTTCGTCGA+TGG	0.503016	3:+106077002	MsaT017134.1:intron
GTAAAGCATATGCGGAAACT+AGG	0.510714	3:+106077175	MsaT017134.1:CDS
CTGTGGTTACGGGACGGTGG+CGG	0.513006	3:+106077071	MsaT017134.1:CDS
CGCAGAGGAAGGCGGAGTCA+GGG	0.518288	3:-106076356	None:intergenic
TCGTCTTCGTCGATGGAGGT+TGG	0.523017	3:+106077009	MsaT017134.1:CDS
AGGTTGGAGTTGTTCCTGAC+GGG	0.524585	3:+106077025	MsaT017134.1:CDS
GCTTTACACGTGACATGAGC+AGG	0.534087	3:-106076465	None:intergenic
GGATTCGAAGAACGGAGTAA+CGG	0.536432	3:-106076568	None:intergenic
GGCGTGGACTTTGGAGTCAC+AGG	0.543388	3:-106076382	None:intergenic
GTCACAGGCGCCGCAGAGGA+AGG	0.545693	3:-106076367	None:intergenic
TCGGAATCAGAGAAAAGATA+AGG	0.547155	3:-106076711	None:intergenic
TGGATCGAAGTTGCCATGAA+CGG	0.558189	3:-106076796	None:intergenic
CGCTCGTGACGTGCGGCGAG+AGG	0.558417	3:-106076540	None:intergenic
ATGAAGCTGAAGTTGCTTCG+TGG	0.559796	3:+106076652	MsaT017134.1:CDS
GCAGTAGAGAGTAGCGGTGG+CGG	0.563031	3:-106076331	None:intergenic
GAAGTGTTGGATTCGAAGAA+CGG	0.565969	3:-106076576	None:intergenic
GATGCAGAGAGAAGCTGCAT+CGG	0.576026	3:-106076487	None:intergenic
CATATGCGGAAACTAGGCCT+AGG	0.577094	3:+106077181	MsaT017134.1:CDS
GGCGGCGGATCGTGAAGCTA+GGG	0.577274	3:+106077089	MsaT017134.1:CDS
ACGAGAGGCGAGTTTGTTAG+CGG	0.583367	3:-106076403	None:intergenic
GGTATCGTCTTCGTCGATGG+AGG	0.585063	3:+106077005	MsaT017134.1:intron
ACAGGCGCCGCAGAGGAAGG+CGG	0.586506	3:-106076364	None:intergenic
GATTAGCAGTGTGGATGTCA+CGG	0.589251	3:-106076518	None:intergenic
CGCTTCTCGTAAAGCATATG+CGG	0.592961	3:+106077167	MsaT017134.1:CDS
GAGGTTGGAGTTGTTCCTGA+CGG	0.607148	3:+106077024	MsaT017134.1:CDS
GGGAACACGCTCGTGACGTG+CGG	0.610507	3:-106076547	None:intergenic
ATCGTGAAGCTAGGGTTATG+AGG	0.615678	3:+106077097	MsaT017134.1:CDS
TGGAGTCACAGGCGCCGCAG+AGG	0.616423	3:-106076371	None:intergenic
AGGCGAGTTTGTTAGCGGCG+TGG	0.630051	3:-106076398	None:intergenic
TGACTAATCTGCGACTGTGA+CGG	0.630286	3:-106076873	None:intergenic
AGTGACGCGAGGGTGACGAG+AGG	0.632213	3:-106076418	None:intergenic
GCGGCAGTAGAGAGTAGCGG+TGG	0.638763	3:-106076334	None:intergenic
AGGGCGGCAGTAGAGAGTAG+CGG	0.646899	3:-106076337	None:intergenic
CGGCGAGAGGATTAGCAGTG+TGG	0.659805	3:-106076527	None:intergenic
AGAGGAAGGCGGAGTCAGGG+CGG	0.663446	3:-106076353	None:intergenic
CCTGACTCCGCCTTCCTCTG+CGG	0.671751	3:+106076357	MsaT017134.1:CDS
ATCGAACTGTGGTTACGGGA+CGG	0.672790	3:+106077065	MsaT017134.1:CDS
TCCTGACGGGAACACCGTGT+CGG	0.682213	3:+106077038	MsaT017134.1:CDS
GAACTGTGGTTACGGGACGG+TGG	0.687113	3:+106077068	MsaT017134.1:CDS
CTTCGCAGAGAGTGACGCGA+GGG	0.694593	3:-106076428	None:intergenic
CTAGGCCTAGGATTAAAGGG+AGG	0.700310	3:+106077193	MsaT017134.1:CDS
ACTTCGCAGAGAGTGACGCG+AGG	0.710854	3:-106076429	None:intergenic
CCGTAATCGAGATCCATGAA+CGG	0.730276	3:-106076741	None:intergenic
ACAGTTCGATATCTCCGACA+CGG	0.744977	3:-106077052	None:intergenic
GTGTCGGAGATATCGAACTG+TGG	0.760977	3:+106077054	MsaT017134.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	106076300	106077278	106076300	ID=MsaG017134
Chr3	mRNA	106076300	106077278	106076300	ID=MsaT017134.1;Parent=MsaG017134
Chr3	exon	106076300	106076899	106076300	ID=MsaT017134.1.exon1;Parent=MsaT017134.1
Chr3	CDS	106076300	106076899	106076300	ID=cds.MsaT017134.1;Parent=MsaT017134.1
Chr3	exon	106077006	106077278	106077006	ID=MsaT017134.1.exon2;Parent=MsaT017134.1
Chr3	CDS	106077006	106077278	106077006	ID=cds.MsaT017134.1;Parent=MsaT017134.1

Gene Sequence

>MsaT017134.1

ATGGCTTCTAAACTCTGTGACTCATGCAAATCCGCCACCGCTACTCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCGGCGCCTGTGACTCCAAAGTCCACGCCGCTAACAAACTCGCCTCTCGTCACCCTCGCGTCACTCTCTGCGAAGTCTGCGAACAAGCACCTGCTCATGTCACGTGTAAAGCCGATGCAGCTTCTCTCTGCATCACCTGTGACCGTGACATCCACACTGCTAATCCTCTCGCCGCACGTCACGAGCGTGTTCCCGTTACTCCGTTCTTCGAATCCAACACTTCTCACTCTGTTAAATCGCTTCAAAACAATAACAACAACTACGATGCTGTTAAAGATGAAGCTGAAGTTGCTTCGTGGTTGATCTCTGATCCGAAAGCAGATCTCAACTCATCTCCTTATCTTTTCTCTGATTCCGAAGCTATTCCGTTCATGGATCTCGATTACGGTGTAATTGAACATAAAAACGACGGTGTTGTTCCCGTTCATGGCAACTTCGATCCATTTGTTTCAGCTTACAAGAACAACAACGTGCACTTGCATACAGAGTTAGAAACACCGTCACAGTCGCAGATTAGTCAGAGTGTATCGTCTTCGTCGATGGAGGTTGGAGTTGTTCCTGACGGGAACACCGTGTCGGAGATATCGAACTGTGGTTACGGGACGGTGGCGGCGGATCGTGAAGCTAGGGTTATGAGGTATAGGGAGAAGAGGAAGAATAGAAGATTCGAGAAGACGATTCGTTACGCTTCTCGTAAAGCATATGCGGAAACTAGGCCTAGGATTAAAGGGAGGTTTGCAAAACGCACTGATGCAGTTGATTCCATTTCTGGATACGGCATCGTTCCCACTTGTTGA

Protein sequence

>MsaT017134.1

MASKLCDSCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHTANPLAARHERVPVTPFFESNTSHSVKSLQNNNNNYDAVKDEAEVASWLISDPKADLNSSPYLFSDSEAIPFMDLDYGVIEHKNDGVVPVHGNFDPFVSAYKNNNVHLHTELETPSQSQISQSVSSSSMEVGVVPDGNTVSEISNCGYGTVAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSISGYGIVPTC*