AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG017154

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017154 MtrunA17_Chr3g0136961 91.497 294 24 1 1 293 1 294 0.0 562
MsaG017154 MtrunA17_Chr1g0150281 58.784 296 92 8 1 286 1 276 4.61e-106 310
MsaG017154 MtrunA17_Chr2g0333851 44.043 277 115 6 29 286 58 313 1.48e-67 213
MsaG017154 MtrunA17_Chr4g0001361 41.875 320 135 10 6 286 7 314 5.98e-61 196
MsaG017154 MtrunA17_Chr1g0150271 41.899 179 69 4 123 290 86 240 1.71e-37 133
MsaG017154 MtrunA17_Chr3g0099641 30.279 251 120 6 1 196 59 309 4.63e-27 109
MsaG017154 MtrunA17_Chr4g0051181 47.748 111 48 3 85 195 200 300 5.44e-27 109
MsaG017154 MtrunA17_Chr7g0270831 35.266 207 84 6 123 285 201 401 2.93e-25 104
MsaG017154 MtrunA17_Chr2g0288871 58.750 80 28 2 116 195 288 362 5.43e-25 104
MsaG017154 MtrunA17_Chr4g0060271 55.000 80 34 1 117 196 236 313 5.74e-25 104
MsaG017154 MtrunA17_Chr4g0075201 32.512 203 98 4 30 195 124 324 1.11e-24 103
MsaG017154 MtrunA17_Chr2g0322391 55.556 81 31 2 116 196 332 407 8.30e-24 101
MsaG017154 MtrunA17_Chr7g0216891 64.407 59 21 0 137 195 218 276 1.34e-23 100
MsaG017154 MtrunA17_Chr2g0302391 46.465 99 48 2 120 215 195 291 1.08e-22 97.1
MsaG017154 MtrunA17_Chr5g0401821 39.850 133 59 4 70 196 140 257 9.45e-22 92.0
MsaG017154 MtrunA17_Chr5g0445311 62.712 59 21 1 137 195 363 420 1.17e-21 94.7
MsaG017154 MtrunA17_Chr5g0445311 48.387 62 30 2 139 200 201 260 5.29e-11 63.2
MsaG017154 MtrunA17_Chr3g0101131 62.712 59 21 1 137 195 414 471 2.12e-21 94.0
MsaG017154 MtrunA17_Chr3g0101131 44.286 70 37 2 139 208 244 311 1.10e-11 65.1
MsaG017154 MtrunA17_Chr4g0025051 51.351 74 36 0 122 195 319 392 2.89e-21 93.6
MsaG017154 MtrunA17_Chr5g0447701 53.333 75 32 2 122 196 238 309 6.21e-21 91.7
MsaG017154 MtrunA17_Chr5g0418191 51.163 86 36 4 110 195 297 376 7.11e-21 92.0
MsaG017154 MtrunA17_Chr5g0418191 56.140 57 23 2 139 195 152 206 3.41e-14 72.4
MsaG017154 MtrunA17_Chr4g0042831 42.478 113 56 5 111 220 256 362 2.47e-20 90.1
MsaG017154 MtrunA17_Chr4g0042831 41.860 86 43 3 125 210 137 215 9.60e-12 65.1
MsaG017154 MtrunA17_Chr4g0053281 58.621 58 24 0 139 196 267 324 3.81e-20 89.0
MsaG017154 MtrunA17_Chr4g0025061 49.333 75 38 0 121 195 343 417 4.86e-20 90.1
MsaG017154 MtrunA17_Chr5g0443131 56.667 60 25 1 136 195 155 213 6.67e-20 87.8
MsaG017154 MtrunA17_Chr1g0194481 55.882 68 27 2 136 203 156 220 8.17e-20 87.8
MsaG017154 MtrunA17_Chr7g0270191 44.792 96 48 3 112 207 121 211 9.83e-20 87.0
MsaG017154 MtrunA17_Chr1g0184691 56.897 58 25 0 139 196 294 351 1.66e-19 87.4
MsaG017154 MtrunA17_Chr7g0218081 54.795 73 30 3 123 195 397 466 2.31e-19 87.8
MsaG017154 MtrunA17_Chr7g0218081 42.857 91 49 3 139 229 229 316 2.13e-14 73.2
MsaG017154 MtrunA17_Chr3g0106491 51.316 76 34 3 120 195 349 421 2.84e-19 87.8
MsaG017154 MtrunA17_Chr3g0106491 42.169 83 37 3 113 195 182 253 5.90e-14 72.0
MsaG017154 MtrunA17_Chr7g0238921 35.088 171 90 6 72 224 41 208 3.85e-19 85.9
MsaG017154 MtrunA17_Chr4g0051881 55.932 59 25 1 137 195 177 234 3.87e-19 85.9
MsaG017154 MtrunA17_Chr1g0188941 54.237 59 26 1 137 195 50 107 3.98e-19 81.3
MsaG017154 MtrunA17_Chr1g0147881 56.140 57 25 0 139 195 263 319 4.99e-19 85.9
MsaG017154 MtrunA17_Chr5g0432161 51.316 76 34 3 120 195 405 477 7.22e-19 86.7
MsaG017154 MtrunA17_Chr5g0432161 52.632 57 25 2 139 195 245 299 3.91e-14 72.4
MsaG017154 MtrunA17_Chr1g0150801 54.237 59 26 1 137 195 101 158 8.63e-19 81.6
MsaG017154 MtrunA17_Chr4g0071521 42.000 100 54 2 102 197 205 304 1.19e-18 84.3
MsaG017154 MtrunA17_Chr5g0418781 55.000 60 26 1 136 195 122 180 1.53e-18 83.6
MsaG017154 MtrunA17_Chr2g0294231 44.565 92 43 3 136 220 201 291 1.80e-18 84.7
MsaG017154 MtrunA17_Chr7g0263531 55.932 59 25 1 137 195 360 417 2.72e-18 84.3
MsaG017154 MtrunA17_Chr7g0263531 49.351 77 35 3 123 199 176 248 4.27e-16 78.2
MsaG017154 MtrunA17_Chr7g0243891 55.932 59 25 1 137 195 373 430 3.06e-18 84.7
MsaG017154 MtrunA17_Chr7g0243891 41.489 94 39 4 132 211 204 295 1.03e-12 68.2
MsaG017154 MtrunA17_Chr3g0079691 57.627 59 24 1 137 195 494 551 3.65e-18 84.7
MsaG017154 MtrunA17_Chr3g0079691 53.448 58 25 2 138 195 280 335 1.39e-12 67.8
MsaG017154 MtrunA17_Chr4g0004911 55.932 59 25 1 137 195 335 392 3.85e-18 84.3
MsaG017154 MtrunA17_Chr4g0004911 50.000 58 28 1 138 195 184 240 4.22e-14 72.4
MsaG017154 MtrunA17_Chr7g0249301 48.684 76 36 2 120 195 276 348 5.63e-18 83.2
MsaG017154 MtrunA17_Chr7g0249301 50.000 60 28 2 137 196 61 118 6.97e-12 65.5
MsaG017154 MtrunA17_Chr7g0249311 42.000 100 52 3 99 195 352 448 6.14e-18 84.0
MsaG017154 MtrunA17_Chr7g0249311 52.542 59 26 2 138 196 179 235 3.69e-12 66.6
MsaG017154 MtrunA17_Chr8g0379461 53.448 58 27 0 139 196 77 134 8.65e-18 80.9
MsaG017154 MtrunA17_Chr7g0224801 54.237 59 26 1 137 195 92 149 2.04e-17 78.2
MsaG017154 MtrunA17_Chr8g0383351 51.667 60 28 1 137 196 159 217 4.32e-17 78.6
MsaG017154 MtrunA17_Chr3g0129361 48.718 78 35 3 137 213 143 216 5.38e-17 78.2
MsaG017154 MtrunA17_Chr7g0228941 49.123 57 29 0 139 195 53 109 5.68e-17 75.5
MsaG017154 MtrunA17_Chr8g0383251 52.542 59 27 1 137 195 107 164 8.76e-17 76.6
MsaG017154 MtrunA17_Chr8g0386241 50.877 57 27 1 139 195 104 159 1.47e-16 75.9
MsaG017154 MtrunA17_Chr4g0068541 51.667 60 28 1 136 195 206 264 1.52e-16 79.3
MsaG017154 MtrunA17_Chr2g0319961 47.143 70 37 0 139 208 81 150 2.29e-16 77.0
MsaG017154 MtrunA17_Chr2g0284321 43.056 72 41 0 139 210 36 107 2.82e-16 75.9
MsaG017154 MtrunA17_Chr8g0335811 51.667 60 28 1 137 196 153 211 4.07e-16 75.9
MsaG017154 MtrunA17_Chr3g0129321 54.237 59 26 1 137 195 117 174 4.66e-16 75.1
MsaG017154 MtrunA17_Chr2g0293481 45.205 73 40 0 139 211 268 340 1.75e-15 76.3
MsaG017154 MtrunA17_Chr4g0074001 50.877 57 27 1 139 195 360 415 2.53e-15 75.9
MsaG017154 MtrunA17_Chr3g0139021 49.123 57 29 0 139 195 315 371 2.68e-15 75.5
MsaG017154 MtrunA17_Chr7g0270051 50.877 57 28 0 139 195 54 110 2.89e-15 73.9
MsaG017154 MtrunA17_Chr2g0289181 49.153 59 30 0 138 196 14 72 3.62e-15 73.2
MsaG017154 MtrunA17_Chr8g0348311 49.123 57 29 0 139 195 156 212 4.62e-15 74.3
MsaG017154 MtrunA17_Chr8g0387501 39.326 89 50 1 139 227 130 214 7.61e-15 73.2
MsaG017154 MtrunA17_Chr5g0432071 40.230 87 46 4 139 225 105 185 1.74e-14 70.9
MsaG017154 MtrunA17_Chr4g0024391 27.528 178 116 5 22 194 116 285 2.29e-14 73.2
MsaG017154 MtrunA17_Chr7g0248691 47.368 57 30 0 139 195 155 211 7.10e-14 70.9
MsaG017154 MtrunA17_Chr1g0202461 36.842 95 57 1 122 216 248 339 7.35e-14 71.2
MsaG017154 MtrunA17_Chr7g0248721 54.237 59 25 2 137 195 140 196 8.51e-14 69.3
MsaG017154 MtrunA17_Chr1g0189391 42.667 75 39 3 123 196 84 155 3.09e-13 68.9
MsaG017154 MtrunA17_Chr7g0275531 38.235 102 51 3 108 199 82 181 3.66e-13 68.9
MsaG017154 MtrunA17_Chr3g0126391 49.153 59 28 1 137 193 132 190 3.88e-12 65.9
MsaG017154 MtrunA17_Chr8g0387981 50.000 58 27 1 138 193 132 189 3.91e-12 65.9
MsaG017154 MtrunA17_Chr5g0447711 44.615 65 35 1 131 195 223 286 5.18e-12 65.5
MsaG017154 MtrunA17_Chr8g0347251 36.170 94 53 2 107 193 100 193 1.35e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG017154 AT1G80840.1 45.791 297 133 10 6 285 9 294 7.74e-71 221
MsaG017154 AT2G25000.2 44.151 265 99 7 29 286 1 223 4.58e-61 194
MsaG017154 AT2G25000.4 44.151 265 99 7 29 286 1 223 4.58e-61 194
MsaG017154 AT2G25000.1 42.612 291 106 9 15 286 18 266 7.99e-61 194
MsaG017154 AT2G25000.3 44.151 265 99 7 29 286 23 245 1.17e-60 193
MsaG017154 AT4G31800.1 38.994 318 138 6 6 286 7 305 3.61e-59 191
MsaG017154 AT4G31800.2 50.898 167 63 1 120 286 93 240 4.90e-51 168
MsaG017154 AT4G31800.3 40.097 207 87 5 6 175 7 213 1.64e-33 123
MsaG017154 AT1G62300.1 31.621 253 110 6 4 195 119 369 1.30e-27 112
MsaG017154 AT1G68150.1 45.528 123 60 4 120 240 219 336 1.84e-26 107
MsaG017154 AT4G22070.4 57.895 76 30 1 120 195 281 354 4.58e-25 105
MsaG017154 AT4G22070.3 57.895 76 30 1 120 195 281 354 4.58e-25 105
MsaG017154 AT4G22070.2 57.895 76 30 1 120 195 281 354 4.58e-25 105
MsaG017154 AT4G22070.1 57.895 76 30 1 120 195 281 354 4.58e-25 105
MsaG017154 AT4G04450.2 56.579 76 31 1 120 195 182 255 1.29e-24 102
MsaG017154 AT4G01720.1 33.503 197 92 5 33 195 105 296 2.85e-24 102
MsaG017154 AT4G04450.1 56.579 76 31 1 120 195 276 349 3.26e-24 102
MsaG017154 AT5G15130.2 47.959 98 46 2 99 196 151 243 6.52e-24 101
MsaG017154 AT5G15130.1 47.959 98 46 2 99 196 193 285 7.65e-24 101
MsaG017154 AT1G18860.1 62.712 59 22 0 137 195 238 296 4.96e-22 96.3
MsaG017154 AT5G26170.1 56.667 60 25 1 137 196 112 170 1.48e-21 89.7
MsaG017154 AT1G13960.2 53.012 83 33 4 113 195 236 312 1.78e-21 93.2
MsaG017154 AT1G13960.2 56.140 57 23 2 139 195 77 131 1.16e-14 73.9
MsaG017154 AT1G13960.1 53.012 83 33 4 113 195 389 465 3.66e-21 93.6
MsaG017154 AT1G13960.1 56.140 57 23 2 139 195 230 284 1.51e-14 73.9
MsaG017154 AT5G07100.2 44.954 109 50 6 88 195 98 197 3.85e-21 89.7
MsaG017154 AT5G07100.2 47.541 61 31 1 139 199 25 84 1.11e-12 66.2
MsaG017154 AT5G07100.4 44.954 109 50 6 88 195 98 197 3.85e-21 89.7
MsaG017154 AT5G07100.4 47.541 61 31 1 139 199 25 84 1.11e-12 66.2
MsaG017154 AT5G07100.5 44.954 109 50 6 88 195 98 197 3.85e-21 89.7
MsaG017154 AT5G07100.5 47.541 61 31 1 139 199 25 84 1.11e-12 66.2
MsaG017154 AT5G07100.3 44.954 109 50 6 88 195 98 197 3.85e-21 89.7
MsaG017154 AT5G07100.3 47.541 61 31 1 139 199 25 84 1.11e-12 66.2
MsaG017154 AT4G26640.5 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
MsaG017154 AT4G26640.5 45.070 71 37 2 130 200 27 95 3.83e-11 63.5
MsaG017154 AT4G26640.6 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
MsaG017154 AT4G26640.6 45.070 71 37 2 130 200 27 95 3.83e-11 63.5
MsaG017154 AT4G26640.4 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
MsaG017154 AT4G26640.4 45.070 71 37 2 130 200 27 95 3.83e-11 63.5
MsaG017154 AT4G26640.3 61.017 59 22 1 137 195 204 261 1.43e-20 90.9
MsaG017154 AT4G26640.3 45.070 71 37 2 130 200 27 95 3.83e-11 63.5
MsaG017154 AT5G07100.1 42.742 124 57 7 77 195 176 290 1.46e-20 90.1
MsaG017154 AT5G07100.1 34.351 131 79 4 72 199 51 177 1.19e-12 67.4
MsaG017154 AT4G26640.1 61.017 59 22 1 137 195 308 365 2.33e-20 91.3
MsaG017154 AT4G26640.1 45.070 71 37 2 130 200 131 199 3.81e-11 63.9
MsaG017154 AT4G26640.7 61.017 59 22 1 137 195 340 397 2.39e-20 91.3
MsaG017154 AT4G26640.7 45.070 71 37 2 130 200 163 231 3.48e-11 63.9
MsaG017154 AT4G26640.2 61.017 59 22 1 137 195 380 437 2.40e-20 91.3
MsaG017154 AT4G26640.2 45.070 71 37 2 130 200 203 271 3.49e-11 63.9
MsaG017154 AT2G03340.1 51.807 83 34 4 113 195 395 471 3.88e-20 90.5
MsaG017154 AT2G03340.1 49.275 69 33 2 127 195 239 305 6.07e-15 75.1
MsaG017154 AT2G04880.2 61.017 59 22 1 137 195 282 339 3.93e-20 90.5
MsaG017154 AT2G04880.2 33.000 100 63 3 137 236 110 205 9.49e-11 62.4
MsaG017154 AT2G04880.1 61.017 59 22 1 137 195 306 363 4.58e-20 90.1
MsaG017154 AT1G29860.1 56.667 60 25 1 136 195 134 192 4.75e-20 88.2
MsaG017154 AT5G49520.1 51.389 72 30 2 124 195 211 277 6.45e-20 89.4
MsaG017154 AT5G46350.1 39.695 131 61 6 119 249 169 281 1.26e-19 87.8
MsaG017154 AT2G23320.1 55.172 58 26 0 139 196 241 298 2.45e-19 86.7
MsaG017154 AT2G47260.1 48.810 84 40 2 112 195 150 230 2.68e-19 87.0
MsaG017154 AT5G56270.1 52.632 76 33 3 120 195 471 543 2.79e-19 88.2
MsaG017154 AT5G56270.1 47.761 67 33 2 129 195 264 328 2.23e-12 67.8
MsaG017154 AT4G18170.1 46.753 77 35 3 119 195 158 228 3.15e-19 86.3
MsaG017154 AT4G31550.2 48.571 70 36 0 139 208 246 315 3.35e-19 86.3
MsaG017154 AT4G31550.1 48.571 70 36 0 139 208 247 316 3.35e-19 86.7
MsaG017154 AT2G30590.1 57.895 57 24 0 139 195 314 370 3.42e-19 87.0
MsaG017154 AT5G28650.1 58.621 58 24 0 139 196 263 320 3.99e-19 86.3
MsaG017154 AT1G69810.2 42.697 89 48 2 108 195 117 203 6.46e-19 85.9
MsaG017154 AT1G69810.1 42.697 89 48 2 108 195 175 261 6.95e-19 86.3
MsaG017154 AT1G69310.4 48.052 77 34 3 119 195 133 203 7.33e-19 85.1
MsaG017154 AT1G69310.2 48.052 77 34 3 119 195 133 203 7.33e-19 85.1
MsaG017154 AT1G69310.1 48.052 77 34 3 119 195 133 203 7.33e-19 85.1
MsaG017154 AT1G64000.1 55.932 59 25 1 137 195 113 170 7.67e-19 82.8
MsaG017154 AT3G01970.1 54.688 64 28 1 137 200 64 126 8.13e-19 81.6
MsaG017154 AT2G38470.1 57.627 59 24 1 137 195 361 418 1.27e-18 86.3
MsaG017154 AT2G38470.1 55.172 58 24 2 138 195 184 239 1.01e-14 74.7
MsaG017154 AT3G04670.1 55.172 58 26 0 139 196 263 320 1.61e-18 84.7
MsaG017154 AT5G41570.1 47.436 78 38 2 118 195 80 154 3.45e-18 80.9
MsaG017154 AT4G24240.1 53.448 58 27 0 139 196 282 339 3.72e-18 84.0
MsaG017154 AT3G01080.1 49.398 83 36 4 113 195 286 362 3.98e-18 84.3
MsaG017154 AT3G01080.1 39.080 87 51 2 139 225 168 252 1.02e-11 65.5
MsaG017154 AT5G13080.1 54.237 59 26 1 137 195 66 123 4.22e-18 79.7
MsaG017154 AT3G62340.1 55.738 61 26 1 135 195 115 174 4.40e-18 82.4
MsaG017154 AT3G01080.2 49.398 83 36 4 113 195 324 400 4.61e-18 84.3
MsaG017154 AT3G01080.2 39.080 87 51 2 139 225 206 290 1.39e-11 65.1
MsaG017154 AT2G24570.1 53.125 64 28 1 139 202 244 305 6.40e-18 82.8
MsaG017154 AT2G30250.1 59.649 57 22 1 139 195 329 384 8.20e-18 83.2
MsaG017154 AT2G30250.1 46.154 65 31 3 139 203 167 227 5.61e-11 63.2
MsaG017154 AT5G52830.1 42.697 89 50 1 139 227 166 253 4.71e-17 80.5
MsaG017154 AT1G29280.1 50.877 57 28 0 139 195 75 131 6.74e-17 79.0
MsaG017154 AT5G64810.1 50.847 59 28 1 137 195 109 166 8.32e-17 77.4
MsaG017154 AT1G55600.1 57.895 57 23 1 139 195 308 363 1.88e-16 79.7
MsaG017154 AT2G21900.1 54.237 59 26 1 137 195 108 165 2.10e-16 76.6
MsaG017154 AT4G30935.1 39.785 93 48 2 139 231 332 416 2.30e-16 79.3
MsaG017154 AT4G26440.1 31.953 169 74 6 65 195 263 428 3.87e-16 79.0
MsaG017154 AT4G26440.1 48.387 62 30 2 139 200 179 238 1.57e-11 65.1
MsaG017154 AT2G44745.1 52.542 59 27 1 137 195 144 201 4.92e-16 75.9
MsaG017154 AT4G39410.1 45.946 74 37 2 137 208 222 294 5.52e-16 77.0
MsaG017154 AT2G46130.1 45.556 90 43 4 116 205 13 96 6.54e-16 72.8
MsaG017154 AT2G37260.3 45.333 75 34 2 121 195 258 325 1.37e-15 76.6
MsaG017154 AT2G37260.3 56.897 58 23 2 139 196 86 141 7.99e-15 74.3
MsaG017154 AT2G37260.2 45.333 75 34 2 121 195 256 323 1.41e-15 76.3
MsaG017154 AT2G37260.2 56.897 58 23 2 139 196 84 139 8.35e-15 74.3
MsaG017154 AT3G58710.1 52.632 57 27 0 139 195 72 128 1.87e-15 75.1
MsaG017154 AT3G58710.2 52.632 57 27 0 139 195 71 127 1.91e-15 75.1
MsaG017154 AT2G37260.1 45.333 75 34 2 121 195 338 405 2.00e-15 76.6
MsaG017154 AT2G37260.1 56.897 58 23 2 139 196 166 221 8.68e-15 74.7
MsaG017154 AT2G34830.1 47.692 65 34 0 131 195 208 272 2.16e-15 76.3
MsaG017154 AT2G34830.2 47.692 65 34 0 131 195 217 281 2.30e-15 76.3
MsaG017154 AT1G30650.1 47.692 65 34 0 131 195 210 274 4.83e-15 75.5
MsaG017154 AT4G01250.1 36.441 118 63 3 139 249 129 241 6.31e-15 73.9
MsaG017154 AT1G69310.3 46.753 77 31 4 119 195 133 199 7.74e-15 73.6
MsaG017154 AT5G43290.1 46.154 65 34 1 131 195 107 170 9.27e-15 73.2
MsaG017154 AT4G23550.1 38.961 77 47 0 137 213 139 215 9.27e-14 70.9
MsaG017154 AT5G45050.2 49.123 57 29 0 139 195 1153 1209 1.88e-13 71.2
MsaG017154 AT5G45050.1 49.123 57 29 0 139 195 1181 1237 2.03e-13 71.2
MsaG017154 AT5G45050.4 49.123 57 29 0 139 195 1042 1098 2.22e-13 70.9
MsaG017154 AT2G46400.1 43.836 73 37 2 123 193 91 161 8.20e-13 67.8
MsaG017154 AT2G46130.2 44.444 90 40 5 116 205 13 92 5.95e-12 61.6
MsaG017154 AT3G01080.3 50.820 61 28 2 139 199 206 264 1.21e-11 64.7
MsaG017154 AT5G45260.1 40.260 77 44 1 139 213 1209 1285 5.13e-11 63.9
MsaG017154 AT4G12020.11 34.559 136 67 7 132 267 462 575 8.67e-11 63.2
MsaG017154 AT4G12020.6 34.559 136 67 7 132 267 462 575 9.17e-11 63.2
MsaG017154 AT4G12020.8 34.559 136 67 7 132 267 462 575 9.17e-11 63.2
MsaG017154 AT4G12020.1 34.559 136 67 7 132 267 462 575 9.53e-11 63.2
MsaG017154 AT4G12020.9 34.559 136 67 7 132 267 462 575 9.53e-11 63.2
MsaG017154 AT4G12020.7 34.559 136 67 7 132 267 462 575 9.88e-11 63.2

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTGCCACTGCCATTTC+TGG 0.147288 3:-106237784 MsaT017154.1:CDS
GCCTTTCTCTTTCGCGATAT+TGG 0.191286 3:+106239980 None:intergenic
GCAAGTGCTGTTGCGAAATT+AGG 0.254403 3:+106237799 None:intergenic
CCTCATCCTCACCAATTAAT+TGG 0.285074 3:-106237945 MsaT017154.1:CDS
CTTGGTCCAGCCAAGAAAAT+TGG 0.286759 3:-106237896 MsaT017154.1:CDS
TCAGGTTGCTGATCAGGTTT+TGG 0.288511 3:-106240140 MsaT017154.1:intron
TGAGCTGTACGCCAATTAAT+TGG 0.305961 3:+106237934 None:intergenic
GAACTAGTGAGTGACATTTC+AGG 0.307165 3:+106238012 None:intergenic
CATTTCTGGAAGAATAATTC+TGG 0.326631 3:-106237770 MsaT017154.1:CDS
ATGAATTCAGGTTGCTGATC+AGG 0.334261 3:-106240146 MsaT017154.1:intron
CAGAATTATTCTTCCAGAAA+TGG 0.354382 3:+106237771 None:intergenic
TTCAAGTGCTCCTTTGCTCC+TGG 0.357212 3:-106239597 MsaT017154.1:CDS
GGATATCAGTGGAGAAAATA+TGG 0.364647 3:-106239660 MsaT017154.1:CDS
GCACATGTGGTTCAGTTTCT+CGG 0.370673 3:+106240075 None:intergenic
GAAAATTGTATCAATAGGTT+TGG 0.376161 3:-106239947 MsaT017154.1:CDS
ACCAATATCGCGAAAGAGAA+AGG 0.387719 3:-106239981 MsaT017154.1:CDS
GTGTTGAAAATTGTATCAAT+AGG 0.392499 3:-106239952 MsaT017154.1:CDS
ACCTAAACACTCTCCCTTCT+CGG 0.392654 3:-106240286 MsaT017154.1:CDS
CCCGAGAAGGGAGAGTGTTT+AGG 0.410406 3:+106240285 None:intergenic
TATATACTAACCGCACTAAC+AGG 0.415297 3:+106240257 None:intergenic
GTCTAAGTAGTGAGAATAAG+AGG 0.450271 3:-106240102 MsaT017154.1:CDS
CTAGAGATAATCCCTCTCCT+AGG 0.467386 3:-106239626 MsaT017154.1:CDS
GCTGGAACTAAATTATATGT+AGG 0.476216 3:+106237970 None:intergenic
CTGGAACTAAATTATATGTA+GGG 0.478747 3:+106237971 None:intergenic
CCTAAACACTCTCCCTTCTC+GGG 0.479017 3:-106240285 MsaT017154.1:CDS
TGGAAGAATAATTCTGGATG+TGG 0.479580 3:-106237764 MsaT017154.1:CDS
TCTGTTGAACTAATAACTGC+TGG 0.493414 3:+106237845 None:intergenic
AGAACTTACTAAGCTGGCAT+TGG 0.495787 3:+106239817 None:intergenic
CCAATTAATTGGTGAGGATG+AGG 0.495942 3:+106237945 None:intergenic
CACAGGGCAGCCAGGAGCAA+AGG 0.503671 3:+106239587 None:intergenic
AATTGTAGAACTTACTAAGC+TGG 0.507761 3:+106239811 None:intergenic
TATGTGGTCACTAATATGCT+CGG 0.512756 3:+106238066 None:intergenic
ATGTAGGGGTTGTTTCACTT+TGG 0.521708 3:+106237986 None:intergenic
ATTGGTGAGGATGAGGATGC+TGG 0.529139 3:+106237952 None:intergenic
TCAAGCTTCAGAGCTTGACT+TGG 0.532387 3:-106237914 MsaT017154.1:CDS
TGTCTCCTCCTCAGTAGTAA+TGG 0.551953 3:+106239901 None:intergenic
GCAGTTATTAGTTCAACAGA+TGG 0.557437 3:-106237842 MsaT017154.1:CDS
ATGTGGTCACTAATATGCTC+GGG 0.561198 3:+106238067 None:intergenic
GACCTCGCCGAGAGTTTCCA+AGG 0.562692 3:-106239861 MsaT017154.1:CDS
CTAACAGGTGTGTCCCGAGA+AGG 0.571023 3:+106240272 None:intergenic
GTTGTGCTCTCCTTCGTATG+TGG 0.572822 3:+106238050 None:intergenic
GAGCACTTGAAGTAAGCCCT+AGG 0.576521 3:+106239609 None:intergenic
CAGTATAATTGTCGCACATG+TGG 0.579804 3:+106240062 None:intergenic
TAACAGGTGTGTCCCGAGAA+GGG 0.581505 3:+106240273 None:intergenic
ATCTGTACGCACAAGAACCT+TGG 0.586094 3:+106239844 None:intergenic
TAGAGATAATCCCTCTCCTA+GGG 0.588394 3:-106239625 MsaT017154.1:CDS
TATTCTTCCAGAAATGGCAG+TGG 0.593871 3:+106237777 None:intergenic
TTGAAGTAAGCCCTAGGAGA+GGG 0.594565 3:+106239615 None:intergenic
TTTCAGGTTGGTGATGCGCA+TGG 0.595445 3:+106238028 None:intergenic
GTATTGAAGTATGTGAAGGA+TGG 0.607747 3:-106239681 MsaT017154.1:intron
ATACATGTGTGAATTCACTT+CGG 0.612284 3:+106237736 None:intergenic
TCGGGACACACCTGTTAGTG+CGG 0.618406 3:-106240267 MsaT017154.1:intron
TTGGGTATTGAAGTATGTGA+AGG 0.631029 3:-106239685 MsaT017154.1:intron
CCACATGGAACCAACGTGTG+TGG 0.633718 3:-106240321 None:intergenic
CTTGAAGTAAGCCCTAGGAG+AGG 0.642278 3:+106239614 None:intergenic
ACAAGAACCTTGGAAACTCT+CGG 0.643388 3:+106239854 None:intergenic
ATGTGAAGGATGGATATCAG+TGG 0.648222 3:-106239671 MsaT017154.1:CDS
TGGAACTAAATTATATGTAG+GGG 0.651480 3:+106237972 None:intergenic
CAGCACCATTACTACTGAGG+AGG 0.656419 3:-106239906 MsaT017154.1:CDS
AACCTTGGAAACTCTCGGCG+AGG 0.657343 3:+106239859 None:intergenic
TGTACGCCAATTAATTGGTG+AGG 0.660265 3:+106237939 None:intergenic
TAGTGAGTGACATTTCAGGT+TGG 0.685861 3:+106238016 None:intergenic
GAGCAGCACCATTACTACTG+AGG 0.711173 3:-106239909 MsaT017154.1:CDS
ATATTAGTGACCACATACGA+AGG 0.729115 3:-106238060 MsaT017154.1:CDS
AGAGAAGTATCCACACACGT+TGG 0.751057 3:+106240311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 106237750 106240339 106237750 ID=MsaG017154
Chr3 mRNA 106237750 106240339 106237750 ID=MsaT017154.1;Parent=MsaG017154
Chr3 exon 106237750 106238109 106237750 ID=MsaT017154.1.exon4;Parent=MsaT017154.1
Chr3 CDS 106237750 106238109 106237750 ID=cds.MsaT017154.1;Parent=MsaT017154.1
Chr3 exon 106239578 106239694 106239578 ID=MsaT017154.1.exon3;Parent=MsaT017154.1
Chr3 CDS 106239578 106239694 106239578 ID=cds.MsaT017154.1;Parent=MsaT017154.1
Chr3 exon 106239826 106240158 106239826 ID=MsaT017154.1.exon2;Parent=MsaT017154.1
Chr3 CDS 106239826 106240158 106239826 ID=cds.MsaT017154.1;Parent=MsaT017154.1
Chr3 exon 106240268 106240339 106240268 ID=MsaT017154.1.exon1;Parent=MsaT017154.1
Chr3 CDS 106240268 106240339 106240268 ID=cds.MsaT017154.1;Parent=MsaT017154.1
Gene Sequence

>MsaT017154.1

ATGGAACCAACGTGTGTGGATACTTCTCTCAACCTAAACACTCTCCCTTCTCGGGACACACCTGTTAGTGCGGTTGCTGATCAGGTTTTGGTTGAAGAGTTGAAGCGTCTAAGTAGTGAGAATAAGAGGTTAACCGAGAAACTGAACCACATGTGCGACAATTATACTGCTTTGCGAAAGCATTTGAGTCAATTCAGTCACACAAAATTTGAAAATGAATTAGTATCACCAATATCGCGAAAGAGAAAGGCCGAGAGTGTTGAAAATTGTATCAATAGGTTTGGCTATGCTATTGCTGAGAGCAGCACCATTACTACTGAGGAGGAGACATTCAAACACAACAACATGACCTCGCCGAGAGTTTCCAAGGTTCTTGTGCGTACAGATGCATCCAATGCCAGCTTATATGTGAAGGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTCACTAGAGATAATCCCTCTCCTAGGGCTTACTTCAAGTGCTCCTTTGCTCCTGGCTGCCCTGTGAAAAAGAAGGTGCAAAGAAGTGTAGAAGACCCGAGCATATTAGTGACCACATACGAAGGAGAGCACAACCATGCGCATCACCAACCTGAAATGTCACTCACTAGTTCAAACCAAAGTGAAACAACCCCTACATATAATTTAGTTCCAGCATCCTCATCCTCACCAATTAATTGGCGTACAGCTCAAGCTTCAGAGCTTGACTTGGTCCAGCCAAGAAAATTGGTAGTTGATGATTCTCATAAGTCGTCTATCCAGCAGTTATTAGTTCAACAGATGGCTACTTCTTTGACAAGAGATCCTAATTTCGCAACAGCACTTGCCACTGCCATTTCTGGAAGAATAATTCTGGATGTGGAAAAGCCGAAGTGA
Protein sequence

>MsaT017154.1

MEPTCVDTSLNLNTLPSRDTPVSAVADQVLVEELKRLSSENKRLTEKLNHMCDNYTALRKHLSQFSHTKFENELVSPISRKRKAESVENCINRFGYAIAESSTITTEEETFKHNNMTSPRVSKVLVRTDASNASLYVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPGCPVKKKVQRSVEDPSILVTTYEGEHNHAHHQPEMSLTSSNQSETTPTYNLVPASSSSPINWRTAQASELDLVQPRKLVVDDSHKSSIQQLLVQQMATSLTRDPNFATALATAISGRIILDVEKPK*